ISHmu7
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001688 | ND | Halomicrobium mukohataei | Halomicrobium mukohataei DSM 12286 |
DNA section
IS Length : 1455 bp
Ends
Left end : GGACGACTCAAGGCTAAAACCTCGCCCTTTAGGGCGGGGATACAGCCGACAATTCCTACACAGTCCCCGTCGATTCCAAGGCCGGATATTCCACGCCCTG II struct. : No
Right end : CGCGAGAGCGGACGGTTCCCACCGAGAGAACAGGGAGACTGTAGACCCTAATATCCCAACGCTCGGGAATCCTCGCCCTTCAGGGCGGGGAGGATGTCAA II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TCGTCACCTTTG | TTAT | GCGACGGCTGTC | tcaa |
DNA sequence
GGACGACTCAAGGCTAAAACCTCGCCCTTTAGGGCGGGGATACAGCCGACAATTCCTACACAGTCCCCGTCGATTCCAAGGCCGGATATTCCACGCCCTG
CTCGTTACCTTTAATATAATGTCCCATAACTGGTTATAAACACAGTACGATGCTGGAGACGACCCGCACCTACGTCGTACGCATCACGAACCACGGTCAG
GTTCGTGACGACCTTGACCAGTGCGGGTTCGTAGCATCCAAGCTGTGGAACGTCGGACGCCACTACATCCAAGGTCGGTGGGATGAGGACGGTGAAATAC
CCGACGAGAAAGAGCTAAAATCGGAGTTGAAAGACCACGAACGCTACAGTGACCTGCATTCTCAGTCAAGTCAGCGAGTTCTCGAAGAGCTTGCTGAGGC
GTTCACCGGCTGGTACAACTCCGACGACGGCAATAACCCACCCGGCTATCGGAAACGTGGTGACCGACACCCGCGCTCCACCGTGACGTGGAAGCAGAAA
GCCATCAAGCACGACGACAAGCACGGCCAGCTTCGTCTCTCGAAAGGCTTCAACCTGAAAGAGAGTCGATCTGACTTCATCCTCGCGGAATACGAAACCC
GCCCTGACGTAGAAGTCGAGCACATCCAGCAGGTGCGTGCCGTCTGGAACGGCGACGAGTGGGAACTACACCTCGTCTGCAAGAAAGAAATTCCAATCGA
GGACGCACCCGGCGACGCCACGGCGGGTATCGATCTCGGTATCAGCAACTACCTCGCTATCGACTATGAGAACGGCCCCTCGGAGCTGTATCCGGGGAAC
GTGCTGAAAGAGGACAAGCACTACTTCACCCGCGAGGAGTATCAGACCGAAGGCGAGAACGGGCCGTCGAAGCGTGCGCGGAAGGCTCGCCGGAAACTCT
CCCGACGCAAAGACCACTTCCTCCACACTCTCAGCAAGCACATCGTTGAGCAGTGTGTCGAAGAAGGTGTGGGAAAGATCGCGGTTGGCGACCTCAGCGA
CATTCGCGAAGGCGAGAACGGTGATTCGCGGAATTGGGGTCCGTCGGGAAACAAGAAGTTGCACGGATGGGAGTTCGGCCGCTTCGCCCGTCTGCTCGAA
TACAAGGCCGAGGAACACGGCATCCTCGTTGATCGTGTAGACGAGGAGAACACCTCAAAGACGTGTTCGTGTTGCGGACAGATTCGTGCTAGCAACCGCG
TGGAGCGTGGGCTGTACGTCTGTGAGTCGTGCGAGACGACGATGAATGCGGACGTGAACGGTGCGGTGAACATTCGGAGAAAGATAACTCAGAGTCCCCC
GACGGGGGATATGAGTAACGGCTGGTTGGCACAGCCCGGAGTCTTCCTGTTCGACCGCGAGAGCGGACGGTTCCCACCGAGAGAACAGGGAGACTGTAGA
CCCTAATATCCCAACGCTCGGGAATCCTCGCCCTTCAGGGCGGGGAGGATGTCAA
CTCGTTACCTTTAATATAATGTCCCATAACTGGTTATAAACACAGTACGATGCTGGAGACGACCCGCACCTACGTCGTACGCATCACGAACCACGGTCAG
GTTCGTGACGACCTTGACCAGTGCGGGTTCGTAGCATCCAAGCTGTGGAACGTCGGACGCCACTACATCCAAGGTCGGTGGGATGAGGACGGTGAAATAC
CCGACGAGAAAGAGCTAAAATCGGAGTTGAAAGACCACGAACGCTACAGTGACCTGCATTCTCAGTCAAGTCAGCGAGTTCTCGAAGAGCTTGCTGAGGC
GTTCACCGGCTGGTACAACTCCGACGACGGCAATAACCCACCCGGCTATCGGAAACGTGGTGACCGACACCCGCGCTCCACCGTGACGTGGAAGCAGAAA
GCCATCAAGCACGACGACAAGCACGGCCAGCTTCGTCTCTCGAAAGGCTTCAACCTGAAAGAGAGTCGATCTGACTTCATCCTCGCGGAATACGAAACCC
GCCCTGACGTAGAAGTCGAGCACATCCAGCAGGTGCGTGCCGTCTGGAACGGCGACGAGTGGGAACTACACCTCGTCTGCAAGAAAGAAATTCCAATCGA
GGACGCACCCGGCGACGCCACGGCGGGTATCGATCTCGGTATCAGCAACTACCTCGCTATCGACTATGAGAACGGCCCCTCGGAGCTGTATCCGGGGAAC
GTGCTGAAAGAGGACAAGCACTACTTCACCCGCGAGGAGTATCAGACCGAAGGCGAGAACGGGCCGTCGAAGCGTGCGCGGAAGGCTCGCCGGAAACTCT
CCCGACGCAAAGACCACTTCCTCCACACTCTCAGCAAGCACATCGTTGAGCAGTGTGTCGAAGAAGGTGTGGGAAAGATCGCGGTTGGCGACCTCAGCGA
CATTCGCGAAGGCGAGAACGGTGATTCGCGGAATTGGGGTCCGTCGGGAAACAAGAAGTTGCACGGATGGGAGTTCGGCCGCTTCGCCCGTCTGCTCGAA
TACAAGGCCGAGGAACACGGCATCCTCGTTGATCGTGTAGACGAGGAGAACACCTCAAAGACGTGTTCGTGTTGCGGACAGATTCGTGCTAGCAACCGCG
TGGAGCGTGGGCTGTACGTCTGTGAGTCGTGCGAGACGACGATGAATGCGGACGTGAACGGTGCGGTGAACATTCGGAGAAAGATAACTCAGAGTCCCCC
GACGGGGGATATGAGTAACGGCTGGTTGGCACAGCCCGGAGTCTTCCTGTTCGACCGCGAGAGCGGACGGTTCCCACCGAGAGAACAGGGAGACTGTAGA
CCCTAATATCCCAACGCTCGGGAATCCTCGCCCTTCAGGGCGGGGAGGATGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1257 bp | 418 aa | 150 | 1406 | + | No |
AG : TnpB
ORF sequence :
MLETTRTYVVRITNHGQVRDDLDQCGFVASKLWNVGRHYIQGRWDEDGEIPDEKELKSELKDHERYSDLHSQSSQRVLEELAEAFTGWYNSDDGNNPPGY
RKRGDRHPRSTVTWKQKAIKHDDKHGQLRLSKGFNLKESRSDFILAEYETRPDVEVEHIQQVRAVWNGDEWELHLVCKKEIPIEDAPGDATAGIDLGISN
YLAIDYENGPSELYPGNVLKEDKHYFTREEYQTEGENGPSKRARKARRKLSRRKDHFLHTLSKHIVEQCVEEGVGKIAVGDLSDIREGENGDSRNWGPSG
NKKLHGWEFGRFARLLEYKAEEHGILVDRVDEENTSKTCSCCGQIRASNRVERGLYVCESCETTMNADVNGAVNIRRKITQSPPTGDMSNGWLAQPGVFL
FDRESGRFPPREQGDCRP
RKRGDRHPRSTVTWKQKAIKHDDKHGQLRLSKGFNLKESRSDFILAEYETRPDVEVEHIQQVRAVWNGDEWELHLVCKKEIPIEDAPGDATAGIDLGISN
YLAIDYENGPSELYPGNVLKEDKHYFTREEYQTEGENGPSKRARKARRKLSRRKDHFLHTLSKHIVEQCVEEGVGKIAVGDLSDIREGENGDSRNWGPSG
NKKLHGWEFGRFARLLEYKAEEHGILVDRVDEENTSKTCSCCGQIRASNRVERGLYVCESCETTMNADVNGAVNIRRKITQSPPTGDMSNGWLAQPGVFL
FDRESGRFPPREQGDCRP
Blast result :
Comments
ISHmu7 is 68% (TnpB) aa similar to ISNph18.
References
1] Pfeiffer, F. (2013) Direct submission
2] Tindall,B.J., Schneider,S., Lapidus,A., Copeland,A., Glavina Del Rio,T., Nolan,M., Lucas,S., Chen,F., Tice,H., Cheng,J.F., Saunders,E., Bruce,D., Goodwin,L., Pitluck,S., Mikhailova,N., Pati,A., Ivanova,N., Mavrommatis,K., Chen,A., Palaniappan,K., Chain,P., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Brettin,T., Han,C., Rohde,M., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P., Kyrpides,N.C. and Detter,J.C. (2009) Stand Genomic Sci 1 (3), 270-277
2] Tindall,B.J., Schneider,S., Lapidus,A., Copeland,A., Glavina Del Rio,T., Nolan,M., Lucas,S., Chen,F., Tice,H., Cheng,J.F., Saunders,E., Bruce,D., Goodwin,L., Pitluck,S., Mikhailova,N., Pati,A., Ivanova,N., Mavrommatis,K., Chen,A., Palaniappan,K., Chain,P., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Brettin,T., Han,C., Rohde,M., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P., Kyrpides,N.C. and Detter,J.C. (2009) Stand Genomic Sci 1 (3), 270-277