ISHmu7

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001688 ND Halomicrobium mukohataei
Halomicrobium mukohataei DSM 12286
DNA section
IS Length : 1455 bp

Ends


Left end : GGACGACTCAAGGCTAAAACCTCGCCCTTTAGGGCGGGGATACAGCCGACAATTCCTACACAGTCCCCGTCGATTCCAAGGCCGGATATTCCACGCCCTG II struct. : No
Right end : CGCGAGAGCGGACGGTTCCCACCGAGAGAACAGGGAGACTGTAGACCCTAATATCCCAACGCTCGGGAATCCTCGCCCTTCAGGGCGGGGAGGATGTCAA II struct. : No

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
TCGTCACCTTTGTTATGCGACGGCTGTCtcaa

DNA sequence

GGACGACTCAAGGCTAAAACCTCGCCCTTTAGGGCGGGGATACAGCCGACAATTCCTACACAGTCCCCGTCGATTCCAAGGCCGGATATTCCACGCCCTG
CTCGTTACCTTTAATATAATGTCCCATAACTGGTTATAAACACAGTACGATGCTGGAGACGACCCGCACCTACGTCGTACGCATCACGAACCACGGTCAG
GTTCGTGACGACCTTGACCAGTGCGGGTTCGTAGCATCCAAGCTGTGGAACGTCGGACGCCACTACATCCAAGGTCGGTGGGATGAGGACGGTGAAATAC
CCGACGAGAAAGAGCTAAAATCGGAGTTGAAAGACCACGAACGCTACAGTGACCTGCATTCTCAGTCAAGTCAGCGAGTTCTCGAAGAGCTTGCTGAGGC
GTTCACCGGCTGGTACAACTCCGACGACGGCAATAACCCACCCGGCTATCGGAAACGTGGTGACCGACACCCGCGCTCCACCGTGACGTGGAAGCAGAAA
GCCATCAAGCACGACGACAAGCACGGCCAGCTTCGTCTCTCGAAAGGCTTCAACCTGAAAGAGAGTCGATCTGACTTCATCCTCGCGGAATACGAAACCC
GCCCTGACGTAGAAGTCGAGCACATCCAGCAGGTGCGTGCCGTCTGGAACGGCGACGAGTGGGAACTACACCTCGTCTGCAAGAAAGAAATTCCAATCGA
GGACGCACCCGGCGACGCCACGGCGGGTATCGATCTCGGTATCAGCAACTACCTCGCTATCGACTATGAGAACGGCCCCTCGGAGCTGTATCCGGGGAAC
GTGCTGAAAGAGGACAAGCACTACTTCACCCGCGAGGAGTATCAGACCGAAGGCGAGAACGGGCCGTCGAAGCGTGCGCGGAAGGCTCGCCGGAAACTCT
CCCGACGCAAAGACCACTTCCTCCACACTCTCAGCAAGCACATCGTTGAGCAGTGTGTCGAAGAAGGTGTGGGAAAGATCGCGGTTGGCGACCTCAGCGA
CATTCGCGAAGGCGAGAACGGTGATTCGCGGAATTGGGGTCCGTCGGGAAACAAGAAGTTGCACGGATGGGAGTTCGGCCGCTTCGCCCGTCTGCTCGAA
TACAAGGCCGAGGAACACGGCATCCTCGTTGATCGTGTAGACGAGGAGAACACCTCAAAGACGTGTTCGTGTTGCGGACAGATTCGTGCTAGCAACCGCG
TGGAGCGTGGGCTGTACGTCTGTGAGTCGTGCGAGACGACGATGAATGCGGACGTGAACGGTGCGGTGAACATTCGGAGAAAGATAACTCAGAGTCCCCC
GACGGGGGATATGAGTAACGGCTGGTTGGCACAGCCCGGAGTCTTCCTGTTCGACCGCGAGAGCGGACGGTTCCCACCGAGAGAACAGGGAGACTGTAGA
CCCTAATATCCCAACGCTCGGGAATCCTCGCCCTTCAGGGCGGGGAGGATGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1257 bp418 aa1501406+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MLETTRTYVVRITNHGQVRDDLDQCGFVASKLWNVGRHYIQGRWDEDGEIPDEKELKSELKDHERYSDLHSQSSQRVLEELAEAFTGWYNSDDGNNPPGY
RKRGDRHPRSTVTWKQKAIKHDDKHGQLRLSKGFNLKESRSDFILAEYETRPDVEVEHIQQVRAVWNGDEWELHLVCKKEIPIEDAPGDATAGIDLGISN
YLAIDYENGPSELYPGNVLKEDKHYFTREEYQTEGENGPSKRARKARRKLSRRKDHFLHTLSKHIVEQCVEEGVGKIAVGDLSDIREGENGDSRNWGPSG
NKKLHGWEFGRFARLLEYKAEEHGILVDRVDEENTSKTCSCCGQIRASNRVERGLYVCESCETTMNADVNGAVNIRRKITQSPPTGDMSNGWLAQPGVFL
FDRESGRFPPREQGDCRP

 

Blast result :
Comments
ISHmu7 is 68% (TnpB) aa similar to ISNph18.
References
1] Pfeiffer, F. (2013) Direct submission
2] Tindall,B.J., Schneider,S., Lapidus,A., Copeland,A., Glavina Del Rio,T., Nolan,M., Lucas,S., Chen,F., Tice,H., Cheng,J.F., Saunders,E., Bruce,D., Goodwin,L., Pitluck,S., Mikhailova,N., Pati,A., Ivanova,N., Mavrommatis,K., Chen,A., Palaniappan,K., Chain,P., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Brettin,T., Han,C., Rohde,M., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P., Kyrpides,N.C. and Detter,J.C. (2009) Stand Genomic Sci 1 (3), 270-277