ISHmu6

  • Family IS200/IS605
  • Group IS605
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001688 ND Halomicrobium mukohataei
Halomicrobium mukohataei DSM 12286
DNA section
IS Length : 1889 bp

Ends


Left end : CTGAATTGAGGCGCTAAGCCCCCTTCCTCAGCGAGCGCCGACCGAACAGGAGGCGCGAGCAGGGAGGGGATACAGCGTCCCCAGAATCAAAGATTCTGGT II struct. : Yes
Right end : GGATACACATATATCTGCAAAGCGCGTCGTCGAATCAGGAAGCCCTACCCTCAAGGAGCGAACGGTGTCAGCCGTGTGCGAGTAGGGTAGGGTAGTTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CTGCCGGCAGTATTAGAGGAACTGGTCGtcac

DNA sequence

CTGAATTGAGGCGCTAAGCCCCCTTCCTCAGCGAGCGCCGACCGAACAGGAGGCGCGAGCAGGGAGGGGATACAGCGTCCCCAGAATCAAAGATTCTGGT
GTGCGAACGAGACGCGAGCATCTCGTTAACGCTGCACAGTTCTCATACACAATTCGATAGAAAGCCCACAGGCCCACGTAATCACAATGTTTTTGCAATA
GGGTAGTATCATATTGACTGAACCTAATGGAGTACGACCTCGACTCGGGAGCGCACTCGACGTTTTCCCTGCACTACCACCTGATACTCACCACGAAATA
CCGGCGCGGAGTGCTAACCGAGGAGCGAACCCAATTCATTCACGAGGTCATCAGCGGGTTCACGGACAACTACGGTGTCGAACTGACGAACCTCGACGGC
GAGGACGACCACGTGCACATCCTGTTCCGAGCGAAACCAACCACGGACCTTGTGAAGTTCATCAACACGGTCAAGGGCGCAACCGCCCGCCGTATCCGCA
ACGAGTACGCGGACGAACTGAAAACCGAACTGTGGGGTGACTCGTTCTGGAACGACTCGTACTGCCTCATCTCGACGGGGCAGGTGTCGCTGGATGTGTT
GAAACAGTACGTCGAGGACCAACGCGAGTAGAATGTACTACGCCTACAAGTACCGTCTCAAGCCGTCCGACGCCCACCGAGAGGAGTTGGACCGACACCG
CAATATTTGTAGGCAGCTGTACAACCACACGCTCTACCGCCTCAACGAGTACCAAGATGAACACGGTGAACTGCCGTCCATGACCACGCTTCGGTCGGAG
CTCCCCGACCTCAAAAAGTGGTGGGACGACCTCAACGACGTGTATTCGAAGGTTCTCCAAACCGTCGTGGAACGCCTGTTTGACAACCTCAAAGGCCTCT
CCAAGCTCAAGAAGAACGGCTACGGCGTTGGCCAACTCAAGTGGAAGCCGCCACGGGAGTTCCGCAGTTTCACGTACAGTCAGTCTGGTTTCAAGCTCGA
CAAGAAGGGCGGTCAGACTGTCCTGTCACTCTCGAAACTCGCGGACATACCGATTCGGCTTCACCGCGCCATCCCCAACGACGCCACGCTCAAGCAGGTC
ACAGTCAAGAAGGAACCGACGGGCGAGTGGTTCGCCACGTTCGGTGTCGAAATGGATCGTGAACCTCCCGAGCCACCTGAGAATCCCGAGAAGTGCGTCG
GTATCGACGTGGGGATTTGCAAGTACGCTCACGACACCGACGGTACAGCAGTCGGGTCGCTCGACCTCACCGACGAACGCGAACGCTTGGAACGTGAGCA
ACGGAAGCTCTCGCAAAAACAACACGGGTCGAACAGCTACGAGAAGCAACGGCGGCGAGTCGCGAAGTATTACGCCGACCTCCGACGGAAGCGCCGCGAC
TTCCTGCATAAGTTGTCGAACTACTACGCTCGGGAGTACGACCTTGTGGCGGTCGAGGACCTGAATGTGAAGGGGATGATGGAGTCGCCGTCGAACAGCC
GCAACACCGCCTCCGCCGCGTGGCGGACGTTCCTCTCGTTGCTCGAATACAAGTGTGAGCGCGAAGGGACGCACTTCGTGGCGGTCAACCCGAGAGGGAC
GACCAAGAAATGCGCGTCATGTGGCGTCTCGACGGAGAAGCCGTTGTGGGTCCGTGAACACTCCTGTCCCGCCTGCGGGTTCGAGGCGGACAGGGACGCG
AACGCAGCGTGGAACATTCTTTCTCGCGGCCTCGAAAACGTAGGAGTGGGATACTTCGAATCAACGCCTGTGGAGACTGCGCTCCCTGTGGATACACATA
TATCTGCAAAGCGCGTCGTCGAATCAGGAAGCCCTACCCTCAAGGAGCGAACGGTGTCAGCCGTGTGCGAGTAGGGTAGGGTAGTTCAC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
405 bp134 aa227631+No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MEYDLDSGAHSTFSLHYHLILTTKYRRGVLTEERTQFIHEVISGFTDNYGVELTNLDGEDDHVHILFRAKPTTDLVKFINTVKGATARRIRNEYADELKT
ELWGDSFWNDSYCLISTGQVSLDVLKQYVEDQRE

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1242 bp413 aa6331874+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MYYAYKYRLKPSDAHREELDRHRNICRQLYNHTLYRLNEYQDEHGELPSMTTLRSELPDLKKWWDDLNDVYSKVLQTVVERLFDNLKGLSKLKKNGYGVG
QLKWKPPREFRSFTYSQSGFKLDKKGGQTVLSLSKLADIPIRLHRAIPNDATLKQVTVKKEPTGEWFATFGVEMDREPPEPPENPEKCVGIDVGICKYAH
DTDGTAVGSLDLTDERERLEREQRKLSQKQHGSNSYEKQRRRVAKYYADLRRKRRDFLHKLSNYYAREYDLVAVEDLNVKGMMESPSNSRNTASAAWRTF
LSLLEYKCEREGTHFVAVNPRGTTKKCASCGVSTEKPLWVREHSCPACGFEADRDANAAWNILSRGLENVGVGYFESTPVETALPVDTHISAKRVVESGS
PTLKERTVSAVCE

 

Blast result :
Comments
ISHmu6 is 99% (TnpA : the transposase) and 96% (TnpB) aa similar to ISHma12.
References
1] Pfeiffer, F. (2013) Direct submission
2] Tindall,B.J., Schneider,S., Lapidus,A., Copeland,A., Glavina Del Rio,T., Nolan,M., Lucas,S., Chen,F., Tice,H., Cheng,J.F., Saunders,E., Bruce,D., Goodwin,L., Pitluck,S., Mikhailova,N., Pati,A., Ivanova,N., Mavrommatis,K., Chen,A., Palaniappan,K., Chain,P., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Brettin,T., Han,C., Rohde,M., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P., Kyrpides,N.C. and Detter,J.C. (2009) Stand Genomic Sci 1 (3), 270-277