ISHmu6
- Family IS200/IS605
- Group IS605
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001688 | ND | Halomicrobium mukohataei | Halomicrobium mukohataei DSM 12286 |
DNA section
IS Length : 1889 bp
Ends
Left end : CTGAATTGAGGCGCTAAGCCCCCTTCCTCAGCGAGCGCCGACCGAACAGGAGGCGCGAGCAGGGAGGGGATACAGCGTCCCCAGAATCAAAGATTCTGGT II struct. : Yes
Right end : GGATACACATATATCTGCAAAGCGCGTCGTCGAATCAGGAAGCCCTACCCTCAAGGAGCGAACGGTGTCAGCCGTGTGCGAGTAGGGTAGGGTAGTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CTGCCGGCAGTA | TTAG | AGGAACTGGTCG | tcac |
DNA sequence
CTGAATTGAGGCGCTAAGCCCCCTTCCTCAGCGAGCGCCGACCGAACAGGAGGCGCGAGCAGGGAGGGGATACAGCGTCCCCAGAATCAAAGATTCTGGT
GTGCGAACGAGACGCGAGCATCTCGTTAACGCTGCACAGTTCTCATACACAATTCGATAGAAAGCCCACAGGCCCACGTAATCACAATGTTTTTGCAATA
GGGTAGTATCATATTGACTGAACCTAATGGAGTACGACCTCGACTCGGGAGCGCACTCGACGTTTTCCCTGCACTACCACCTGATACTCACCACGAAATA
CCGGCGCGGAGTGCTAACCGAGGAGCGAACCCAATTCATTCACGAGGTCATCAGCGGGTTCACGGACAACTACGGTGTCGAACTGACGAACCTCGACGGC
GAGGACGACCACGTGCACATCCTGTTCCGAGCGAAACCAACCACGGACCTTGTGAAGTTCATCAACACGGTCAAGGGCGCAACCGCCCGCCGTATCCGCA
ACGAGTACGCGGACGAACTGAAAACCGAACTGTGGGGTGACTCGTTCTGGAACGACTCGTACTGCCTCATCTCGACGGGGCAGGTGTCGCTGGATGTGTT
GAAACAGTACGTCGAGGACCAACGCGAGTAGAATGTACTACGCCTACAAGTACCGTCTCAAGCCGTCCGACGCCCACCGAGAGGAGTTGGACCGACACCG
CAATATTTGTAGGCAGCTGTACAACCACACGCTCTACCGCCTCAACGAGTACCAAGATGAACACGGTGAACTGCCGTCCATGACCACGCTTCGGTCGGAG
CTCCCCGACCTCAAAAAGTGGTGGGACGACCTCAACGACGTGTATTCGAAGGTTCTCCAAACCGTCGTGGAACGCCTGTTTGACAACCTCAAAGGCCTCT
CCAAGCTCAAGAAGAACGGCTACGGCGTTGGCCAACTCAAGTGGAAGCCGCCACGGGAGTTCCGCAGTTTCACGTACAGTCAGTCTGGTTTCAAGCTCGA
CAAGAAGGGCGGTCAGACTGTCCTGTCACTCTCGAAACTCGCGGACATACCGATTCGGCTTCACCGCGCCATCCCCAACGACGCCACGCTCAAGCAGGTC
ACAGTCAAGAAGGAACCGACGGGCGAGTGGTTCGCCACGTTCGGTGTCGAAATGGATCGTGAACCTCCCGAGCCACCTGAGAATCCCGAGAAGTGCGTCG
GTATCGACGTGGGGATTTGCAAGTACGCTCACGACACCGACGGTACAGCAGTCGGGTCGCTCGACCTCACCGACGAACGCGAACGCTTGGAACGTGAGCA
ACGGAAGCTCTCGCAAAAACAACACGGGTCGAACAGCTACGAGAAGCAACGGCGGCGAGTCGCGAAGTATTACGCCGACCTCCGACGGAAGCGCCGCGAC
TTCCTGCATAAGTTGTCGAACTACTACGCTCGGGAGTACGACCTTGTGGCGGTCGAGGACCTGAATGTGAAGGGGATGATGGAGTCGCCGTCGAACAGCC
GCAACACCGCCTCCGCCGCGTGGCGGACGTTCCTCTCGTTGCTCGAATACAAGTGTGAGCGCGAAGGGACGCACTTCGTGGCGGTCAACCCGAGAGGGAC
GACCAAGAAATGCGCGTCATGTGGCGTCTCGACGGAGAAGCCGTTGTGGGTCCGTGAACACTCCTGTCCCGCCTGCGGGTTCGAGGCGGACAGGGACGCG
AACGCAGCGTGGAACATTCTTTCTCGCGGCCTCGAAAACGTAGGAGTGGGATACTTCGAATCAACGCCTGTGGAGACTGCGCTCCCTGTGGATACACATA
TATCTGCAAAGCGCGTCGTCGAATCAGGAAGCCCTACCCTCAAGGAGCGAACGGTGTCAGCCGTGTGCGAGTAGGGTAGGGTAGTTCAC
GTGCGAACGAGACGCGAGCATCTCGTTAACGCTGCACAGTTCTCATACACAATTCGATAGAAAGCCCACAGGCCCACGTAATCACAATGTTTTTGCAATA
GGGTAGTATCATATTGACTGAACCTAATGGAGTACGACCTCGACTCGGGAGCGCACTCGACGTTTTCCCTGCACTACCACCTGATACTCACCACGAAATA
CCGGCGCGGAGTGCTAACCGAGGAGCGAACCCAATTCATTCACGAGGTCATCAGCGGGTTCACGGACAACTACGGTGTCGAACTGACGAACCTCGACGGC
GAGGACGACCACGTGCACATCCTGTTCCGAGCGAAACCAACCACGGACCTTGTGAAGTTCATCAACACGGTCAAGGGCGCAACCGCCCGCCGTATCCGCA
ACGAGTACGCGGACGAACTGAAAACCGAACTGTGGGGTGACTCGTTCTGGAACGACTCGTACTGCCTCATCTCGACGGGGCAGGTGTCGCTGGATGTGTT
GAAACAGTACGTCGAGGACCAACGCGAGTAGAATGTACTACGCCTACAAGTACCGTCTCAAGCCGTCCGACGCCCACCGAGAGGAGTTGGACCGACACCG
CAATATTTGTAGGCAGCTGTACAACCACACGCTCTACCGCCTCAACGAGTACCAAGATGAACACGGTGAACTGCCGTCCATGACCACGCTTCGGTCGGAG
CTCCCCGACCTCAAAAAGTGGTGGGACGACCTCAACGACGTGTATTCGAAGGTTCTCCAAACCGTCGTGGAACGCCTGTTTGACAACCTCAAAGGCCTCT
CCAAGCTCAAGAAGAACGGCTACGGCGTTGGCCAACTCAAGTGGAAGCCGCCACGGGAGTTCCGCAGTTTCACGTACAGTCAGTCTGGTTTCAAGCTCGA
CAAGAAGGGCGGTCAGACTGTCCTGTCACTCTCGAAACTCGCGGACATACCGATTCGGCTTCACCGCGCCATCCCCAACGACGCCACGCTCAAGCAGGTC
ACAGTCAAGAAGGAACCGACGGGCGAGTGGTTCGCCACGTTCGGTGTCGAAATGGATCGTGAACCTCCCGAGCCACCTGAGAATCCCGAGAAGTGCGTCG
GTATCGACGTGGGGATTTGCAAGTACGCTCACGACACCGACGGTACAGCAGTCGGGTCGCTCGACCTCACCGACGAACGCGAACGCTTGGAACGTGAGCA
ACGGAAGCTCTCGCAAAAACAACACGGGTCGAACAGCTACGAGAAGCAACGGCGGCGAGTCGCGAAGTATTACGCCGACCTCCGACGGAAGCGCCGCGAC
TTCCTGCATAAGTTGTCGAACTACTACGCTCGGGAGTACGACCTTGTGGCGGTCGAGGACCTGAATGTGAAGGGGATGATGGAGTCGCCGTCGAACAGCC
GCAACACCGCCTCCGCCGCGTGGCGGACGTTCCTCTCGTTGCTCGAATACAAGTGTGAGCGCGAAGGGACGCACTTCGTGGCGGTCAACCCGAGAGGGAC
GACCAAGAAATGCGCGTCATGTGGCGTCTCGACGGAGAAGCCGTTGTGGGTCCGTGAACACTCCTGTCCCGCCTGCGGGTTCGAGGCGGACAGGGACGCG
AACGCAGCGTGGAACATTCTTTCTCGCGGCCTCGAAAACGTAGGAGTGGGATACTTCGAATCAACGCCTGTGGAGACTGCGCTCCCTGTGGATACACATA
TATCTGCAAAGCGCGTCGTCGAATCAGGAAGCCCTACCCTCAAGGAGCGAACGGTGTCAGCCGTGTGCGAGTAGGGTAGGGTAGTTCAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
405 bp | 134 aa | 227 | 631 | + | No |
Chemistry : Y1
ORF sequence :
MEYDLDSGAHSTFSLHYHLILTTKYRRGVLTEERTQFIHEVISGFTDNYGVELTNLDGEDDHVHILFRAKPTTDLVKFINTVKGATARRIRNEYADELKT
ELWGDSFWNDSYCLISTGQVSLDVLKQYVEDQRE
ELWGDSFWNDSYCLISTGQVSLDVLKQYVEDQRE
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1242 bp | 413 aa | 633 | 1874 | + | No |
AG : TnpB
ORF sequence :
MYYAYKYRLKPSDAHREELDRHRNICRQLYNHTLYRLNEYQDEHGELPSMTTLRSELPDLKKWWDDLNDVYSKVLQTVVERLFDNLKGLSKLKKNGYGVG
QLKWKPPREFRSFTYSQSGFKLDKKGGQTVLSLSKLADIPIRLHRAIPNDATLKQVTVKKEPTGEWFATFGVEMDREPPEPPENPEKCVGIDVGICKYAH
DTDGTAVGSLDLTDERERLEREQRKLSQKQHGSNSYEKQRRRVAKYYADLRRKRRDFLHKLSNYYAREYDLVAVEDLNVKGMMESPSNSRNTASAAWRTF
LSLLEYKCEREGTHFVAVNPRGTTKKCASCGVSTEKPLWVREHSCPACGFEADRDANAAWNILSRGLENVGVGYFESTPVETALPVDTHISAKRVVESGS
PTLKERTVSAVCE
QLKWKPPREFRSFTYSQSGFKLDKKGGQTVLSLSKLADIPIRLHRAIPNDATLKQVTVKKEPTGEWFATFGVEMDREPPEPPENPEKCVGIDVGICKYAH
DTDGTAVGSLDLTDERERLEREQRKLSQKQHGSNSYEKQRRRVAKYYADLRRKRRDFLHKLSNYYAREYDLVAVEDLNVKGMMESPSNSRNTASAAWRTF
LSLLEYKCEREGTHFVAVNPRGTTKKCASCGVSTEKPLWVREHSCPACGFEADRDANAAWNILSRGLENVGVGYFESTPVETALPVDTHISAKRVVESGS
PTLKERTVSAVCE
Blast result :
Comments
ISHmu6 is 99% (TnpA : the transposase) and 96% (TnpB) aa similar to ISHma12.
References
1] Pfeiffer, F. (2013) Direct submission
2] Tindall,B.J., Schneider,S., Lapidus,A., Copeland,A., Glavina Del Rio,T., Nolan,M., Lucas,S., Chen,F., Tice,H., Cheng,J.F., Saunders,E., Bruce,D., Goodwin,L., Pitluck,S., Mikhailova,N., Pati,A., Ivanova,N., Mavrommatis,K., Chen,A., Palaniappan,K., Chain,P., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Brettin,T., Han,C., Rohde,M., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P., Kyrpides,N.C. and Detter,J.C. (2009) Stand Genomic Sci 1 (3), 270-277
2] Tindall,B.J., Schneider,S., Lapidus,A., Copeland,A., Glavina Del Rio,T., Nolan,M., Lucas,S., Chen,F., Tice,H., Cheng,J.F., Saunders,E., Bruce,D., Goodwin,L., Pitluck,S., Mikhailova,N., Pati,A., Ivanova,N., Mavrommatis,K., Chen,A., Palaniappan,K., Chain,P., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Brettin,T., Han,C., Rohde,M., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P., Kyrpides,N.C. and Detter,J.C. (2009) Stand Genomic Sci 1 (3), 270-277