ISHmu5
- Family IS200/IS605
- Group IS605
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001688 | ND | Halomicrobium mukohataei | Halomicrobium mukohataei DSM 12286 |
DNA section
IS Length : 1847 bp
Ends
Left end : CTTGATTCAGCGAGAGAATCCCTCCGTTCACGGCGGGCGTGAATCGTGTAAGCTCGGTGCGACAGTCCACTCGGTTCTGTCCGACCGAATACCCATTGGC II struct. : No
Right end : CGGATGACGCTCGGCGAGGTCGGGTCGGAACCCTCTGCCGGTAGTTAGCCGGCATTCCCATGCAGGGAAGCCGCGCCGTTCACGGCGCGGAGGATGTCAC II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TACATCGAGTAG | CTAT | TCGAGTGCTTCT |
DNA sequence
CTTGATTCAGCGAGAGAATCCCTCCGTTCACGGCGGGCGTGAATCGTGTAAGCTCGGTGCGACAGTCCACTCGGTTCTGTCCGACCGAATACCCATTGGC
ACAAGAGTTATTGAAATTGGGTGTCTTATATTTGGTAAGGCCAAATGGAGTCTCACCTGCAATCTGGGTCGCACACGGTCTACGCGCTCCAATATCACTT
CGTGACCGTCACGAAGTACCGCGCCGACATCCTCACCGATGAGCGGCTGGAGCGCGTGGCTGAAGTCGCACACGAGATTGCAGAGGACTTCGAGGCCGAC
ATCAAGAACGTGGACGGCGGTACTGACCACGTTCACATCCTGTTCACGACCAAGCCAACCACAGACCTCACGAAGTTCATCAACTCGCTCAAGGGCGTCA
CATCCCGCCGGATTCGGCAGGAGTACCCCGAGGTGAAACAAACGCTCGAAGATGCGTTCTGGCAACCGGGATATTTCCTCGCCACGACCGGTCAAGTGAG
CATCGACGTGCTGATGGACTACGTGGAAAACCAGTAGTATGACCGCGACAACCACGAAAACGCTGGAGGCCACGCTCGCCCCGCCGACAGCCCACAAAGA
GCGTAAACTGTGCGACCTGCTCGACACCTACCGGGCAGGACTCCACGAGGCGTTCGGGGCCGGGTGCGAGACGATGACCGCCACCAGCGACGTGGTAACG
CCCTACGACCTGCCGTATCAGGCGAAGGCGGCCCTGTGTAACTACGTTCCGCAACTGCACGGCACCTACGATGCACAGGAGCTGGACGACGACCACCCAA
TTCGACTCACCAACCAAGCCGCCGAGTTTGACTACTCATCGGAACGGGACTACGAGTTTACGTGGTGGGTGCCACAGCCCGGTCGCGGGACGAACTTCTG
GATACCGCTTCGTATCAACCCCGCTCAAGAAGAACTGTGGCACGACCTCGTGGACGGTGAGGCGTCAGCGGGACAGCTCCGTCTGCAACGTCACCACACG
TCGTGGACGCTTCACGTCACCGTCGAGTTCCCGGTCGAAGAACCAGACTACGAACCGACAGACGACGATGTAACACCAGTCGGCTTCGACATTGGCGAAG
CGCACCTGCTCGCGGGCTGTGCCTGCGAGCAGGACACTCCGACCGACCCACTACTCATCAACGGTGGCCGCGCTCGTCACCTCCGCAAGGAGATGTACAC
GACCCTGAAGCGACTCCAAGAGCGCGAGGCCACCGCGTGGCGGATTGACGAACGGTTCGACCACTACCAGAACGCACTCACGGACATCATCGAGAAGGCG
TCTCGACAGGCAAACGAGTACGCAAGCCGCTTCGAGAAGCCTGTGGTCGTTCTGGAAGACCTCTCGTACATCCGCGAAGAACTCGATTACGGCGAGTGGA
TGAATCGACGCCTCCACGCATGGGCGTTTGCTCGCTTACAGGAGCGCATCGAGGACAAAGCACGAGAGGCCGGGCTTCCGGTCGAATACATCCGCCCGGA
GTACACGAGCCAGACGTGCCACGAGTGCGGCCACGTCGGACACCGGAACGGCGACGAGTTCTGGTGTACGAACGACGAGTGTTGGGTCACGGAGTATCAC
GCAGACATTAACGCGGCGGTCAACATTGCTGGCCGCCACGACCCGTGGGGTGAGAGCCTGCCGCTGAAACCGGCAAGCGATGACATCTCACGGGATGGGA
GCGCCTGTGACAGCGCCGCGATCCCCACCGAGCAGAGCCAACCACGGCGGATGACGCTCGGCGAGGTCGGGTCGGAACCCTCTGCCGGTAGTTAGCCGGC
ATTCCCATGCAGGGAAGCCGCGCCGTTCACGGCGCGGAGGATGTCAC
ACAAGAGTTATTGAAATTGGGTGTCTTATATTTGGTAAGGCCAAATGGAGTCTCACCTGCAATCTGGGTCGCACACGGTCTACGCGCTCCAATATCACTT
CGTGACCGTCACGAAGTACCGCGCCGACATCCTCACCGATGAGCGGCTGGAGCGCGTGGCTGAAGTCGCACACGAGATTGCAGAGGACTTCGAGGCCGAC
ATCAAGAACGTGGACGGCGGTACTGACCACGTTCACATCCTGTTCACGACCAAGCCAACCACAGACCTCACGAAGTTCATCAACTCGCTCAAGGGCGTCA
CATCCCGCCGGATTCGGCAGGAGTACCCCGAGGTGAAACAAACGCTCGAAGATGCGTTCTGGCAACCGGGATATTTCCTCGCCACGACCGGTCAAGTGAG
CATCGACGTGCTGATGGACTACGTGGAAAACCAGTAGTATGACCGCGACAACCACGAAAACGCTGGAGGCCACGCTCGCCCCGCCGACAGCCCACAAAGA
GCGTAAACTGTGCGACCTGCTCGACACCTACCGGGCAGGACTCCACGAGGCGTTCGGGGCCGGGTGCGAGACGATGACCGCCACCAGCGACGTGGTAACG
CCCTACGACCTGCCGTATCAGGCGAAGGCGGCCCTGTGTAACTACGTTCCGCAACTGCACGGCACCTACGATGCACAGGAGCTGGACGACGACCACCCAA
TTCGACTCACCAACCAAGCCGCCGAGTTTGACTACTCATCGGAACGGGACTACGAGTTTACGTGGTGGGTGCCACAGCCCGGTCGCGGGACGAACTTCTG
GATACCGCTTCGTATCAACCCCGCTCAAGAAGAACTGTGGCACGACCTCGTGGACGGTGAGGCGTCAGCGGGACAGCTCCGTCTGCAACGTCACCACACG
TCGTGGACGCTTCACGTCACCGTCGAGTTCCCGGTCGAAGAACCAGACTACGAACCGACAGACGACGATGTAACACCAGTCGGCTTCGACATTGGCGAAG
CGCACCTGCTCGCGGGCTGTGCCTGCGAGCAGGACACTCCGACCGACCCACTACTCATCAACGGTGGCCGCGCTCGTCACCTCCGCAAGGAGATGTACAC
GACCCTGAAGCGACTCCAAGAGCGCGAGGCCACCGCGTGGCGGATTGACGAACGGTTCGACCACTACCAGAACGCACTCACGGACATCATCGAGAAGGCG
TCTCGACAGGCAAACGAGTACGCAAGCCGCTTCGAGAAGCCTGTGGTCGTTCTGGAAGACCTCTCGTACATCCGCGAAGAACTCGATTACGGCGAGTGGA
TGAATCGACGCCTCCACGCATGGGCGTTTGCTCGCTTACAGGAGCGCATCGAGGACAAAGCACGAGAGGCCGGGCTTCCGGTCGAATACATCCGCCCGGA
GTACACGAGCCAGACGTGCCACGAGTGCGGCCACGTCGGACACCGGAACGGCGACGAGTTCTGGTGTACGAACGACGAGTGTTGGGTCACGGAGTATCAC
GCAGACATTAACGCGGCGGTCAACATTGCTGGCCGCCACGACCCGTGGGGTGAGAGCCTGCCGCTGAAACCGGCAAGCGATGACATCTCACGGGATGGGA
GCGCCTGTGACAGCGCCGCGATCCCCACCGAGCAGAGCCAACCACGGCGGATGACGCTCGGCGAGGTCGGGTCGGAACCCTCTGCCGGTAGTTAGCCGGC
ATTCCCATGCAGGGAAGCCGCGCCGTTCACGGCGCGGAGGATGTCAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
393 bp | 130 aa | 145 | 537 | + | No |
Chemistry : Y1
ORF sequence :
MESHLQSGSHTVYALQYHFVTVTKYRADILTDERLERVAEVAHEIAEDFEADIKNVDGGTDHVHILFTTKPTTDLTKFINSLKGVTSRRIRQEYPEVKQT
LEDAFWQPGYFLATTGQVSIDVLMDYVENQ
LEDAFWQPGYFLATTGQVSIDVLMDYVENQ
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1257 bp | 418 aa | 539 | 1795 | + | No |
AG : TnpB
ORF sequence :
MTATTTKTLEATLAPPTAHKERKLCDLLDTYRAGLHEAFGAGCETMTATSDVVTPYDLPYQAKAALCNYVPQLHGTYDAQELDDDHPIRLTNQAAEFDYS
SERDYEFTWWVPQPGRGTNFWIPLRINPAQEELWHDLVDGEASAGQLRLQRHHTSWTLHVTVEFPVEEPDYEPTDDDVTPVGFDIGEAHLLAGCACEQDT
PTDPLLINGGRARHLRKEMYTTLKRLQEREATAWRIDERFDHYQNALTDIIEKASRQANEYASRFEKPVVVLEDLSYIREELDYGEWMNRRLHAWAFARL
QERIEDKAREAGLPVEYIRPEYTSQTCHECGHVGHRNGDEFWCTNDECWVTEYHADINAAVNIAGRHDPWGESLPLKPASDDISRDGSACDSAAIPTEQS
QPRRMTLGEVGSEPSAGS
SERDYEFTWWVPQPGRGTNFWIPLRINPAQEELWHDLVDGEASAGQLRLQRHHTSWTLHVTVEFPVEEPDYEPTDDDVTPVGFDIGEAHLLAGCACEQDT
PTDPLLINGGRARHLRKEMYTTLKRLQEREATAWRIDERFDHYQNALTDIIEKASRQANEYASRFEKPVVVLEDLSYIREELDYGEWMNRRLHAWAFARL
QERIEDKAREAGLPVEYIRPEYTSQTCHECGHVGHRNGDEFWCTNDECWVTEYHADINAAVNIAGRHDPWGESLPLKPASDDISRDGSACDSAAIPTEQS
QPRRMTLGEVGSEPSAGS
Blast result :
Comments
ISHmu5 is 99% (TnpA : the transposase) and 96% (TnpB) aa similar to ISNph5.
References
1] Pfeiffer, F. (2013) Direct submission
2] Tindall,B.J., Schneider,S., Lapidus,A., Copeland,A., Glavina Del Rio,T., Nolan,M., Lucas,S., Chen,F., Tice,H., Cheng,J.F., Saunders,E., Bruce,D., Goodwin,L., Pitluck,S., Mikhailova,N., Pati,A., Ivanova,N., Mavrommatis,K., Chen,A., Palaniappan,K., Chain,P., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Brettin,T., Han,C., Rohde,M., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P., Kyrpides,N.C. and Detter,J.C. (2009) Stand Genomic Sci 1 (3), 270-277
2] Tindall,B.J., Schneider,S., Lapidus,A., Copeland,A., Glavina Del Rio,T., Nolan,M., Lucas,S., Chen,F., Tice,H., Cheng,J.F., Saunders,E., Bruce,D., Goodwin,L., Pitluck,S., Mikhailova,N., Pati,A., Ivanova,N., Mavrommatis,K., Chen,A., Palaniappan,K., Chain,P., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Brettin,T., Han,C., Rohde,M., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P., Kyrpides,N.C. and Detter,J.C. (2009) Stand Genomic Sci 1 (3), 270-277