ISHmu3
- Family IS200/IS605
- Group IS605
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001688 | ND | Halomicrobium mukohataei | Halomicrobium mukohataei DSM 12286 |
DNA section
IS Length : 2029 bp
Ends
Left end : AGGCGGAGCAGGCCGAGTGCCTCGGGGCTTGACCCCGAGGGTGAAGGCCGTACACTCCGCTAAACGTGTTCCGTTCGCTCGATATACTGCTCAATCGTGT II struct. : Yes
Right end : GTGACCCATTCGACCGTTCGAGGCTATCAGGCCGATGGTCGGATGGGTGTGTCTGATTAAACCACGGGAAGCCTCGGGGCTTGACCCCGAGGCGGTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TTACACCGGCAGT | CTAC | AAGAATCTTCTC | TCAC |
DNA sequence
AGGCGGAGCAGGCCGAGTGCCTCGGGGCTTGACCCCGAGGGTGAAGGCCGTACACTCCGCTAAACGTGTTCCGTTCGCTCGATATACTGCTCAATCGTGT
CGGTCGAAACATCGCCTGCCGTCCCCACGTAGTACGATTCCTCCCAAAATCCACCGCCCCACAGGTACTCCTCCAAGAACGGTTCGTGCTGTTCCCACAT
CTCCCGTGCCGTGATGCTCTTGATTGTCCGTACAATCTCGCTCGGCCCGTACTTCGGGTGAGCTGATAGGAACAAGTGTACGTGATCGGGCGAAATATGT
AGCGATAGTATCTCGTAACCGTACTCGTCGCACACATCGCGGAAACTCGCTTCCAGCGAATCCTCGATTGGTTCGAGAATCGTGTAGCGATACTGAGCGG
GATCTTCGATCCCGCGAGGTACGCAAAGCTTCGCTTTGCTTGACTTCGGACACCACACGAAATGGTAGTTGACGTTGTACACCGTGTGATTCGACCGCTT
CTCACCCATATCGAACCTACTCCACCAGCACAGTTAAGTATATCCAAAGGATATACGCAGGTATGGCGAATCGCTTTGAGATCGACGGCGAAGAAGTTCT
CGACGGTGAAGTCAAGCCGTTCGGGAACAGCGCCCATGTCACCGTCCCTAAACGCTGGCGTGGAGCAGATGTGAAAGTCGTCCGAACTTCAGAACCCACC
GAACAAGACGAAGAATGACCACGGCACAGGCTCTCGTCAAGACGCTAGACTTCCAACTCGACATCCAGAGTGACAACGAGAGCCTGTTGTACGACGCCAC
GCTTGAAGCCCGCTCGGTGTACAACGAAACCATCCGCCTCGCGAAAGAAGGCGTGGACTGGGACACCACTCCTGACTGTGTGGCTGATGACGCTGACCTC
GTGAAGAACACGACACAGCGCGTCGTCGCCAAGGCGCTCGGCGCGATGGAGAACTACTACGAGTACGACGACTTCAGCCAACCCAGCCACACCAAGGACG
GCGCGTACCCGCTTCGTGCGAACTATGAGGAGGGGTACAACCTGTCGCTCACCGACGATGGCGGCGTGGCGTTCCGTATCAGCACGGAGCCGTACAAGCA
CGTCAAGGGCTTTCTCACCGGGAGTGACGCCCACCTCGACATTCTCAAGACCGCGCTCACGAGCGACGAGTGGAAAATTGGGACGGCGGAAGCCCTGTTC
CACAACGACGACGCCGAGTTGCACGTCAACGTCACCAACACCGAGCAGACCGTTCGGGACAAGGAAGACTCACGGACTGTCGTGGGTGTGGACGTGAACG
AGGACAACGTGGCTCTCACCGCACTTTCCGGAGATGGCGTCAAGCGCACGTTGGTTATTGACTTCCCCGAAATCAAGTTCGAGCGCCACCGCTACTTCAC
GATGCGAAAGCGCGTCCAGAACGCGGGGAAGGACAGCATCCACGACACGCTCGAAGGACGCGAAGAACGGTTTGTCCGCGACCGCCTCCACAAGGTGTCT
CGACACATCGTAGAGTGGAGCCAGCAGTTCGAGAAGTCGTGCATTGTCTTTGAAGACCTCAAAGAGATGCGCGACAGTATCGACTACGGGACGCGGATGA
ACCGACGCTTGCACCACCTCCCGTTCCGCGCCCTCCAATACTACACGTCGTACAAGGCGTCGTTTGAGGGTATCCCGACTGCGTGGATCAATCCCGAATA
TACGAGTCAGCGGTGTCCGATGTGTGGGCATACAGAGCGAGCGAATCGAAACAAAAAGCGGTTCGAGTGCAAGTCCTGCGAGCATCAAGACCACAGCGAC
CGTAGTGCAAGCGTCAACATCGCCGTGAAAGGCGTGAAGAAACTCGATTGGAATGTGCCTGCTCTCAACAGCCTTCCCGTTGTTCGGAAGGTGCGACGGC
AGGCATCGGGGGCCGTGGACGCCCCGACCGTGACCCATTCGACCGTTCGAGGCTATCAGGCCGATGGTCGGATGGGTGTGTCTGATTAAACCACGGGAAG
CCTCGGGGCTTGACCCCGAGGCGGTTCAC
CGGTCGAAACATCGCCTGCCGTCCCCACGTAGTACGATTCCTCCCAAAATCCACCGCCCCACAGGTACTCCTCCAAGAACGGTTCGTGCTGTTCCCACAT
CTCCCGTGCCGTGATGCTCTTGATTGTCCGTACAATCTCGCTCGGCCCGTACTTCGGGTGAGCTGATAGGAACAAGTGTACGTGATCGGGCGAAATATGT
AGCGATAGTATCTCGTAACCGTACTCGTCGCACACATCGCGGAAACTCGCTTCCAGCGAATCCTCGATTGGTTCGAGAATCGTGTAGCGATACTGAGCGG
GATCTTCGATCCCGCGAGGTACGCAAAGCTTCGCTTTGCTTGACTTCGGACACCACACGAAATGGTAGTTGACGTTGTACACCGTGTGATTCGACCGCTT
CTCACCCATATCGAACCTACTCCACCAGCACAGTTAAGTATATCCAAAGGATATACGCAGGTATGGCGAATCGCTTTGAGATCGACGGCGAAGAAGTTCT
CGACGGTGAAGTCAAGCCGTTCGGGAACAGCGCCCATGTCACCGTCCCTAAACGCTGGCGTGGAGCAGATGTGAAAGTCGTCCGAACTTCAGAACCCACC
GAACAAGACGAAGAATGACCACGGCACAGGCTCTCGTCAAGACGCTAGACTTCCAACTCGACATCCAGAGTGACAACGAGAGCCTGTTGTACGACGCCAC
GCTTGAAGCCCGCTCGGTGTACAACGAAACCATCCGCCTCGCGAAAGAAGGCGTGGACTGGGACACCACTCCTGACTGTGTGGCTGATGACGCTGACCTC
GTGAAGAACACGACACAGCGCGTCGTCGCCAAGGCGCTCGGCGCGATGGAGAACTACTACGAGTACGACGACTTCAGCCAACCCAGCCACACCAAGGACG
GCGCGTACCCGCTTCGTGCGAACTATGAGGAGGGGTACAACCTGTCGCTCACCGACGATGGCGGCGTGGCGTTCCGTATCAGCACGGAGCCGTACAAGCA
CGTCAAGGGCTTTCTCACCGGGAGTGACGCCCACCTCGACATTCTCAAGACCGCGCTCACGAGCGACGAGTGGAAAATTGGGACGGCGGAAGCCCTGTTC
CACAACGACGACGCCGAGTTGCACGTCAACGTCACCAACACCGAGCAGACCGTTCGGGACAAGGAAGACTCACGGACTGTCGTGGGTGTGGACGTGAACG
AGGACAACGTGGCTCTCACCGCACTTTCCGGAGATGGCGTCAAGCGCACGTTGGTTATTGACTTCCCCGAAATCAAGTTCGAGCGCCACCGCTACTTCAC
GATGCGAAAGCGCGTCCAGAACGCGGGGAAGGACAGCATCCACGACACGCTCGAAGGACGCGAAGAACGGTTTGTCCGCGACCGCCTCCACAAGGTGTCT
CGACACATCGTAGAGTGGAGCCAGCAGTTCGAGAAGTCGTGCATTGTCTTTGAAGACCTCAAAGAGATGCGCGACAGTATCGACTACGGGACGCGGATGA
ACCGACGCTTGCACCACCTCCCGTTCCGCGCCCTCCAATACTACACGTCGTACAAGGCGTCGTTTGAGGGTATCCCGACTGCGTGGATCAATCCCGAATA
TACGAGTCAGCGGTGTCCGATGTGTGGGCATACAGAGCGAGCGAATCGAAACAAAAAGCGGTTCGAGTGCAAGTCCTGCGAGCATCAAGACCACAGCGAC
CGTAGTGCAAGCGTCAACATCGCCGTGAAAGGCGTGAAGAAACTCGATTGGAATGTGCCTGCTCTCAACAGCCTTCCCGTTGTTCGGAAGGTGCGACGGC
AGGCATCGGGGGCCGTGGACGCCCCGACCGTGACCCATTCGACCGTTCGAGGCTATCAGGCCGATGGTCGGATGGGTGTGTCTGATTAAACCACGGGAAG
CCTCGGGGCTTGACCCCGAGGCGGTTCAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
450 bp | 149 aa | 509 | 60 | - | No |
Chemistry : Y1
ORF sequence :
MGEKRSNHTVYNVNYHFVWCPKSSKAKLCVPRGIEDPAQYRYTILEPIEDSLEASFRDVCDEYGYEILSLHISPDHVHLFLSAHPKYGPSEIVRTIKSIT
AREMWEQHEPFLEEYLWGGGFWEESYYVGTAGDVSTDTIEQYIERTEHV
AREMWEQHEPFLEEYLWGGGFWEESYYVGTAGDVSTDTIEQYIERTEHV
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1275 bp | 424 aa | 715 | 1989 | + | No |
AG : TnpB
ORF sequence :
MTTAQALVKTLDFQLDIQSDNESLLYDATLEARSVYNETIRLAKEGVDWDTTPDCVADDADLVKNTTQRVVAKALGAMENYYEYDDFSQPSHTKDGAYPL
RANYEEGYNLSLTDDGGVAFRISTEPYKHVKGFLTGSDAHLDILKTALTSDEWKIGTAEALFHNDDAELHVNVTNTEQTVRDKEDSRTVVGVDVNEDNVA
LTALSGDGVKRTLVIDFPEIKFERHRYFTMRKRVQNAGKDSIHDTLEGREERFVRDRLHKVSRHIVEWSQQFEKSCIVFEDLKEMRDSIDYGTRMNRRLH
HLPFRALQYYTSYKASFEGIPTAWINPEYTSQRCPMCGHTERANRNKKRFECKSCEHQDHSDRSASVNIAVKGVKKLDWNVPALNSLPVVRKVRRQASGA
VDAPTVTHSTVRGYQADGRMGVSD
RANYEEGYNLSLTDDGGVAFRISTEPYKHVKGFLTGSDAHLDILKTALTSDEWKIGTAEALFHNDDAELHVNVTNTEQTVRDKEDSRTVVGVDVNEDNVA
LTALSGDGVKRTLVIDFPEIKFERHRYFTMRKRVQNAGKDSIHDTLEGREERFVRDRLHKVSRHIVEWSQQFEKSCIVFEDLKEMRDSIDYGTRMNRRLH
HLPFRALQYYTSYKASFEGIPTAWINPEYTSQRCPMCGHTERANRNKKRFECKSCEHQDHSDRSASVNIAVKGVKKLDWNVPALNSLPVVRKVRRQASGA
VDAPTVTHSTVRGYQADGRMGVSD
Blast result :
Comments
ISHmu3 is 90% (TnpA : the transposase) aa similar to ISNph7 and 95% (TnpB) aa similar to ISHma7.
References
1] Pfeiffer, F. (2013) Direct submission
2] Tindall,B.J., Schneider,S., Lapidus,A., Copeland,A., Glavina Del Rio,T., Nolan,M., Lucas,S., Chen,F., Tice,H., Cheng,J.F., Saunders,E., Bruce,D., Goodwin,L., Pitluck,S., Mikhailova,N., Pati,A., Ivanova,N., Mavrommatis,K., Chen,A., Palaniappan,K., Chain,P., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Brettin,T., Han,C., Rohde,M., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P., Kyrpides,N.C. and Detter,J.C. (2009) Stand Genomic Sci 1 (3), 270-277
2] Tindall,B.J., Schneider,S., Lapidus,A., Copeland,A., Glavina Del Rio,T., Nolan,M., Lucas,S., Chen,F., Tice,H., Cheng,J.F., Saunders,E., Bruce,D., Goodwin,L., Pitluck,S., Mikhailova,N., Pati,A., Ivanova,N., Mavrommatis,K., Chen,A., Palaniappan,K., Chain,P., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Brettin,T., Han,C., Rohde,M., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P., Kyrpides,N.C. and Detter,J.C. (2009) Stand Genomic Sci 1 (3), 270-277