ISH36
- Family IS200/IS605
- Group IS605
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AM774417 | ND | Halobacterium salinarum | Halobacterium salinarum R1 (DSM 671) plasmid pHS2 |
DNA section
IS Length : 1978 bp
Ends
Left end : CGGCGGAGCAGGCCGAGTGCCTCGGGGCTTGACCCCGAGGGTGAAGGCCGTAAGCCCCGTTAAACGTGTTCCGTGCGCTCGATATACTGCTCAATCGTGT II struct. : Yes
Right end : GTGACCCAATCGACCGTTCGAGGCTATCAGGCCGATGGTCGGATGGGAGTGTCCGACTAACCCACGGGAAGCCTCGGGGCTTGACCCCGAGGCGGTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TCGGCGACACCGT | CTAC | AAACAGAATCAC | tcac |
DNA sequence
CGGCGGAGCAGGCCGAGTGCCTCGGGGCTTGACCCCGAGGGTGAAGGCCGTAAGCCCCGTTAAACGTGTTCCGTGCGCTCGATATACTGCTCAATCGTGT
CGGTCGAAACATCACCTGCCGTCCCCACGTAGTACGATTCCTCCCAGAACCCACCGCCCCAAAGATACTCCTCCAAGTACGACTCGTGCTGTTCCCACAT
CTCCCGCGCCGTGATGCTCTTGACCGTCCGCACAATCTCGCCCGGCGCGTGCTTCGGATGGGTGGAGAGGAAAAAATGTACGTGGTCGGGTGAGATGTGG
AGCGACAGTATCTCGTAGCCGTACTCGTCGCACACATCCCGAAAACTCGCCTCCAGCGAATCCTCGATTGGTTCGAGAATGGCGTGGCGATACTTCGGAC
ACCACACGAAGTGATAGTTGACGTTGTACACCGTGTGATTCGACCGCTTCTCGCCCATATCGAACCCACCCCACCAGCACAGTTAAGTATATCCAAAGGA
TATACGCAGGTATGACGAATCGCTTTGAAATCGACGGCGAGGAAGTTCTCGACGGCGAGGTCAAGCCGTTCGGGAACAGTGCCCACGTCACCGTTCCCAA
ACGCTGGCGTGGTGCGGACGTAAAAGTCGTCCGAACCTCAGAACCCACCGAACAAGACGAAGAATGACCGACGCACAGGCTCTTGTCAAGACGCTGGACT
TCCAACTCGACATCCAGAGTGACAACGAGAGCCTGCTGTACGACGCCACGCTCGAAGCCCGCTCGGTGTACAACGAAACCATCCGTCTCGCCAAAGAGGG
TGTGGACTGGGACGCCATCCCCGACCGTGTGGCCGACGATGCCAACCTCGTGAAGAACACGACTCAGCGCGTCGTCGCCAAAGCACTCGGCGCGATGGAG
AACTACTACGAGTACGACGACTTCGGCCAACCCAGTCACACCAAGGACGGCGCGTACCCGCTTCGTGCGAACTACGAGGAAGGGTACAACCTGTCGCTCA
CCGACAACGGTGACGTGGCGTTCCGCATCAGCGCGAAGCCCTACAAACACGTCAAGGGCGTCCTCAAAGGGAGCGACGCTCACCTCGACATTCTCAAGAC
CGCTCTCACGAGTGACGAGTGGAAGATTGGGACGGCGGAAGCCCTGTTCCACAACGACACCCCCGAGTTGCACGTCAACGTTACCAACACCGAGCAGACC
GTTCGAGACAAGCAGTACTCACGGACGGTCGTCGGTGTGGACGTGAACGAAGACAACGTGGCTCTCACCGCTCTTTCCGAGGATGGCATTGAGGACTCGT
TGGTTATCGACTTCCCCGAAATCAAGTTTGAACGTCATCGCTACTTCACGATGCGGAAGCGCGTGCAGAACGCGGGGAAGAACAGCATCCACGACACGCT
GGAAGGGCGTGAGGAACGGTTCGTCCGCGACAGACTCCACAAGGTGAGTCGTCACATCGTGGAGTGGAGCCGTCAGTTCGAGAAACCGTGCATCGTCTTT
GAAGACCTCAAAGAGATGCGCGACAGTATCGACTACGGCACGCGAATGAACCGACGCTTGCACCACCTCCCGTTCCGCGCCCTCCAGTTCTGTACGTCGT
ACAAGGCCGCGTTCGAGGGCATTCCGACCGCGTGGATTAACCCCGAGTACACCAGCCAGCGGTGTCCGCTCTGCGGACACACGGAACGTGCGAATCGGAA
CAAGAAGCGGTTCAAGTGTCGGGACTGCGGGCATCAAGACCACAGCGACCGTGGTGCAAGCGTCAATATCGCTGTAAAAGGCGGCAAGAAACTCGATTGG
AATGTGCCTGCTCTCAACAGCCTTCCCACCGTGCGGAAGGTGCGACGGCGGGCATCGGGGGCCGTGGACGCCCCGACCGTGACCCAATCGACCGTTCGAG
GCTATCAGGCCGATGGTCGGATGGGAGTGTCCGACTAACCCACGGGAAGCCTCGGGGCTTGACCCCGAGGCGGTTCAC
CGGTCGAAACATCACCTGCCGTCCCCACGTAGTACGATTCCTCCCAGAACCCACCGCCCCAAAGATACTCCTCCAAGTACGACTCGTGCTGTTCCCACAT
CTCCCGCGCCGTGATGCTCTTGACCGTCCGCACAATCTCGCCCGGCGCGTGCTTCGGATGGGTGGAGAGGAAAAAATGTACGTGGTCGGGTGAGATGTGG
AGCGACAGTATCTCGTAGCCGTACTCGTCGCACACATCCCGAAAACTCGCCTCCAGCGAATCCTCGATTGGTTCGAGAATGGCGTGGCGATACTTCGGAC
ACCACACGAAGTGATAGTTGACGTTGTACACCGTGTGATTCGACCGCTTCTCGCCCATATCGAACCCACCCCACCAGCACAGTTAAGTATATCCAAAGGA
TATACGCAGGTATGACGAATCGCTTTGAAATCGACGGCGAGGAAGTTCTCGACGGCGAGGTCAAGCCGTTCGGGAACAGTGCCCACGTCACCGTTCCCAA
ACGCTGGCGTGGTGCGGACGTAAAAGTCGTCCGAACCTCAGAACCCACCGAACAAGACGAAGAATGACCGACGCACAGGCTCTTGTCAAGACGCTGGACT
TCCAACTCGACATCCAGAGTGACAACGAGAGCCTGCTGTACGACGCCACGCTCGAAGCCCGCTCGGTGTACAACGAAACCATCCGTCTCGCCAAAGAGGG
TGTGGACTGGGACGCCATCCCCGACCGTGTGGCCGACGATGCCAACCTCGTGAAGAACACGACTCAGCGCGTCGTCGCCAAAGCACTCGGCGCGATGGAG
AACTACTACGAGTACGACGACTTCGGCCAACCCAGTCACACCAAGGACGGCGCGTACCCGCTTCGTGCGAACTACGAGGAAGGGTACAACCTGTCGCTCA
CCGACAACGGTGACGTGGCGTTCCGCATCAGCGCGAAGCCCTACAAACACGTCAAGGGCGTCCTCAAAGGGAGCGACGCTCACCTCGACATTCTCAAGAC
CGCTCTCACGAGTGACGAGTGGAAGATTGGGACGGCGGAAGCCCTGTTCCACAACGACACCCCCGAGTTGCACGTCAACGTTACCAACACCGAGCAGACC
GTTCGAGACAAGCAGTACTCACGGACGGTCGTCGGTGTGGACGTGAACGAAGACAACGTGGCTCTCACCGCTCTTTCCGAGGATGGCATTGAGGACTCGT
TGGTTATCGACTTCCCCGAAATCAAGTTTGAACGTCATCGCTACTTCACGATGCGGAAGCGCGTGCAGAACGCGGGGAAGAACAGCATCCACGACACGCT
GGAAGGGCGTGAGGAACGGTTCGTCCGCGACAGACTCCACAAGGTGAGTCGTCACATCGTGGAGTGGAGCCGTCAGTTCGAGAAACCGTGCATCGTCTTT
GAAGACCTCAAAGAGATGCGCGACAGTATCGACTACGGCACGCGAATGAACCGACGCTTGCACCACCTCCCGTTCCGCGCCCTCCAGTTCTGTACGTCGT
ACAAGGCCGCGTTCGAGGGCATTCCGACCGCGTGGATTAACCCCGAGTACACCAGCCAGCGGTGTCCGCTCTGCGGACACACGGAACGTGCGAATCGGAA
CAAGAAGCGGTTCAAGTGTCGGGACTGCGGGCATCAAGACCACAGCGACCGTGGTGCAAGCGTCAATATCGCTGTAAAAGGCGGCAAGAAACTCGATTGG
AATGTGCCTGCTCTCAACAGCCTTCCCACCGTGCGGAAGGTGCGACGGCGGGCATCGGGGGCCGTGGACGCCCCGACCGTGACCCAATCGACCGTTCGAG
GCTATCAGGCCGATGGTCGGATGGGAGTGTCCGACTAACCCACGGGAAGCCTCGGGGCTTGACCCCGAGGCGGTTCAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
399 bp | 132 aa | 458 | 60 | - | No |
Chemistry : Y1
ORF sequence :
MGEKRSNHTVYNVNYHFVWCPKYRHAILEPIEDSLEASFRDVCDEYGYEILSLHISPDHVHFFLSTHPKHAPGEIVRTVKSITAREMWEQHESYLEEYLW
GGGFWEESYYVGTAGDVSTDTIEQYIERTEHV
GGGFWEESYYVGTAGDVSTDTIEQYIERTEHV
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1275 bp | 424 aa | 664 | 1938 | + | No |
AG : TnpB
ORF sequence :
MTDAQALVKTLDFQLDIQSDNESLLYDATLEARSVYNETIRLAKEGVDWDAIPDRVADDANLVKNTTQRVVAKALGAMENYYEYDDFGQPSHTKDGAYPL
RANYEEGYNLSLTDNGDVAFRISAKPYKHVKGVLKGSDAHLDILKTALTSDEWKIGTAEALFHNDTPELHVNVTNTEQTVRDKQYSRTVVGVDVNEDNVA
LTALSEDGIEDSLVIDFPEIKFERHRYFTMRKRVQNAGKNSIHDTLEGREERFVRDRLHKVSRHIVEWSRQFEKPCIVFEDLKEMRDSIDYGTRMNRRLH
HLPFRALQFCTSYKAAFEGIPTAWINPEYTSQRCPLCGHTERANRNKKRFKCRDCGHQDHSDRGASVNIAVKGGKKLDWNVPALNSLPTVRKVRRRASGA
VDAPTVTQSTVRGYQADGRMGVSD
RANYEEGYNLSLTDNGDVAFRISAKPYKHVKGVLKGSDAHLDILKTALTSDEWKIGTAEALFHNDTPELHVNVTNTEQTVRDKQYSRTVVGVDVNEDNVA
LTALSEDGIEDSLVIDFPEIKFERHRYFTMRKRVQNAGKNSIHDTLEGREERFVRDRLHKVSRHIVEWSRQFEKPCIVFEDLKEMRDSIDYGTRMNRRLH
HLPFRALQFCTSYKAAFEGIPTAWINPEYTSQRCPLCGHTERANRNKKRFKCRDCGHQDHSDRGASVNIAVKGGKKLDWNVPALNSLPTVRKVRRRASGA
VDAPTVTQSTVRGYQADGRMGVSD
Blast result :
Comments
ISH36 is 96% (TnpA : the transposase) and 97% (TnpB) aa similar to ISHma7.
References
1] Pfeiffer F., Schuster S.C., Broicher A., Falb M., Palm P., Rodewald K., Ruepp.A., Soppa J., Tittor J., Oesterhelt D. (2008) Genomics 91: 335-346.