ISNagr10
- Family IS1595
- Group ISH4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003377 | ND | Natronobacterium gregoryi | Natronobacterium gregoryi SP2 |
DNA section
IS Length : 1000 bp
Ends
IR Length : 26/34
IRL : CGCTCTTCGGAAGCAGATTGTTGGTCGAACAGAGCTGGCGCTGTGAAAGC
IRR : CGCTCTTGTGAAGGACATTGTTGGTGAGTCAGAGAACAGTTCGAACGATG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGGATTTACA | ATCAAGAG | ATGGGGAAAC | 8 |
CGCCAACCTA | ATCGGACAA | TATCGGGACT | 9 |
GGAACGAAGA | TTCGGTGTT | TGACCAACGG | 9 |
TGGGCCAACT | CTCAACTAG | TCGGTCCACG | 9 |
ATTTCTGTTT | TAGTATGAC | TTTCACGACG | 9 |
GCCTGCTGCATATAGAGGA | TATAGTAAAGTCTGCTTAG | 0 | |
TTATGTTCTT | AACTCGGGAA | 0 |
DNA sequence
CGCTCTTCGGAAGCAGATTGTTGGTCGAACAGAGCTGGCGCTGTGAAAGCGTAGCGGGCAAGGGTGATGCGTCAGCATCACCCGACTATGTTCCCAGTTG
AAGTGTTTCGCTCAGAGGCGAGCGCCGCGAACCTGCTGGAGCAGGTTCGCTGGCGCGAGGGCCTCCAGTGCCCGCGCTGCCAGTCTGAATCGGTGATCAA
GTACGGCAGCTATCGAGAGTATCAGCGGTATCGCTGTAAAAATTGTGGACGCACGTTCAACGACAAGACCGGCACGATCTTCGCGCACGCGAAGATCGGC
CTTGACAAGCTGTTGTTCGCGTTCTACTCGTTGCTCCGATTCAACACGAGTATCCGCCAGTTAGACGCTGAAATTGACGTCTCCTACCGATCGCTTCACC
GGCGCGTCGAGCGTTTCGCCAGAACGCTCGACGCGCCTCAGCTCGATCTCGTTGGCCCCGTCGAGATCGATGAGTTCTACGTTTCTGCCGGAAAGAAAGG
CCGCGAGCGCGACCAGGAGTCGCGCTCGCGTGGTCTCTCGAAACGTGGCAGAGGAAACTACGACGAAGACAAGCCACCTGTGTTTGTCCTCGTTGATCGC
GGTAGCGATCAGCGATACGTCATCCCGTCGAAATCCGCCGACGAATCGGCTGTGCGACTCCTCCTCGATTCCCACGAGGAGGAGTCGCTGACAGTCTATA
CCGACGGCTTTCGTGCCTACGACCCGTTAGAGACGGACGAAACGTACCAGCGAGAAGCGGTTATTCACGGCGAGGGAGAGTACGTTGATGGAGATGTACA
CGTGAATACGTGCGAGAGCCACGCGTCGCTGGCGCGACGGTGGCTCTCGCCGCATCGAGGTATCTCGAAGGACAAACTCACCACGTATCTCAGACTCTTC
GAATTTCGTCGGAAAATCCTACGCAAACCCGGTCGAAAAGCCCTGAAAGACATCGTTCGAACTGTTCTCTGACTCACCAACAATGTCCTTCACAAGAGCG
AAGTGTTTCGCTCAGAGGCGAGCGCCGCGAACCTGCTGGAGCAGGTTCGCTGGCGCGAGGGCCTCCAGTGCCCGCGCTGCCAGTCTGAATCGGTGATCAA
GTACGGCAGCTATCGAGAGTATCAGCGGTATCGCTGTAAAAATTGTGGACGCACGTTCAACGACAAGACCGGCACGATCTTCGCGCACGCGAAGATCGGC
CTTGACAAGCTGTTGTTCGCGTTCTACTCGTTGCTCCGATTCAACACGAGTATCCGCCAGTTAGACGCTGAAATTGACGTCTCCTACCGATCGCTTCACC
GGCGCGTCGAGCGTTTCGCCAGAACGCTCGACGCGCCTCAGCTCGATCTCGTTGGCCCCGTCGAGATCGATGAGTTCTACGTTTCTGCCGGAAAGAAAGG
CCGCGAGCGCGACCAGGAGTCGCGCTCGCGTGGTCTCTCGAAACGTGGCAGAGGAAACTACGACGAAGACAAGCCACCTGTGTTTGTCCTCGTTGATCGC
GGTAGCGATCAGCGATACGTCATCCCGTCGAAATCCGCCGACGAATCGGCTGTGCGACTCCTCCTCGATTCCCACGAGGAGGAGTCGCTGACAGTCTATA
CCGACGGCTTTCGTGCCTACGACCCGTTAGAGACGGACGAAACGTACCAGCGAGAAGCGGTTATTCACGGCGAGGGAGAGTACGTTGATGGAGATGTACA
CGTGAATACGTGCGAGAGCCACGCGTCGCTGGCGCGACGGTGGCTCTCGCCGCATCGAGGTATCTCGAAGGACAAACTCACCACGTATCTCAGACTCTTC
GAATTTCGTCGGAAAATCCTACGCAAACCCGGTCGAAAAGCCCTGAAAGACATCGTTCGAACTGTTCTCTGACTCACCAACAATGTCCTTCACAAGAGCG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
885 bp | 294 aa | 88 | 972 | + | No |
Chemistry : DDE
ORF sequence :
MFPVEVFRSEASAANLLEQVRWREGLQCPRCQSESVIKYGSYREYQRYRCKNCGRTFNDKTGTIFAHAKIGLDKLLFAFYSLLRFNTSIRQLDAEIDVSY
RSLHRRVERFARTLDAPQLDLVGPVEIDEFYVSAGKKGRERDQESRSRGLSKRGRGNYDEDKPPVFVLVDRGSDQRYVIPSKSADESAVRLLLDSHEEES
LTVYTDGFRAYDPLETDETYQREAVIHGEGEYVDGDVHVNTCESHASLARRWLSPHRGISKDKLTTYLRLFEFRRKILRKPGRKALKDIVRTVL
RSLHRRVERFARTLDAPQLDLVGPVEIDEFYVSAGKKGRERDQESRSRGLSKRGRGNYDEDKPPVFVLVDRGSDQRYVIPSKSADESAVRLLLDSHEEES
LTVYTDGFRAYDPLETDETYQREAVIHGEGEYVDGDVHVNTCESHASLARRWLSPHRGISKDKLTTYLRLFEFRRKILRKPGRKALKDIVRTVL
Blast result :
Comments
ISNagr10 is 92% aa similar to ISHwa6.
References
1] Pfeiffer, F. (2013) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank