ISNagr10

  • Family IS1595
  • Group ISH4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003377 ND Natronobacterium gregoryi
Natronobacterium gregoryi SP2
DNA section
IS Length : 1000 bp

Ends


IR Length : 26/34

IRL : CGCTCTTCGGAAGCAGATTGTTGGTCGAACAGAGCTGGCGCTGTGAAAGC
IRR : CGCTCTTGTGAAGGACATTGTTGGTGAGTCAGAGAACAGTTCGAACGATG

Insertion site


Left flankDirect repeatRight flankDR Length
CGGATTTACAATCAAGAGATGGGGAAAC8
CGCCAACCTAATCGGACAATATCGGGACT9
GGAACGAAGATTCGGTGTTTGACCAACGG9
TGGGCCAACTCTCAACTAGTCGGTCCACG9
ATTTCTGTTTTAGTATGACTTTCACGACG9
GCCTGCTGCATATAGAGGATATAGTAAAGTCTGCTTAG0
TTATGTTCTTAACTCGGGAA0

DNA sequence

CGCTCTTCGGAAGCAGATTGTTGGTCGAACAGAGCTGGCGCTGTGAAAGCGTAGCGGGCAAGGGTGATGCGTCAGCATCACCCGACTATGTTCCCAGTTG
AAGTGTTTCGCTCAGAGGCGAGCGCCGCGAACCTGCTGGAGCAGGTTCGCTGGCGCGAGGGCCTCCAGTGCCCGCGCTGCCAGTCTGAATCGGTGATCAA
GTACGGCAGCTATCGAGAGTATCAGCGGTATCGCTGTAAAAATTGTGGACGCACGTTCAACGACAAGACCGGCACGATCTTCGCGCACGCGAAGATCGGC
CTTGACAAGCTGTTGTTCGCGTTCTACTCGTTGCTCCGATTCAACACGAGTATCCGCCAGTTAGACGCTGAAATTGACGTCTCCTACCGATCGCTTCACC
GGCGCGTCGAGCGTTTCGCCAGAACGCTCGACGCGCCTCAGCTCGATCTCGTTGGCCCCGTCGAGATCGATGAGTTCTACGTTTCTGCCGGAAAGAAAGG
CCGCGAGCGCGACCAGGAGTCGCGCTCGCGTGGTCTCTCGAAACGTGGCAGAGGAAACTACGACGAAGACAAGCCACCTGTGTTTGTCCTCGTTGATCGC
GGTAGCGATCAGCGATACGTCATCCCGTCGAAATCCGCCGACGAATCGGCTGTGCGACTCCTCCTCGATTCCCACGAGGAGGAGTCGCTGACAGTCTATA
CCGACGGCTTTCGTGCCTACGACCCGTTAGAGACGGACGAAACGTACCAGCGAGAAGCGGTTATTCACGGCGAGGGAGAGTACGTTGATGGAGATGTACA
CGTGAATACGTGCGAGAGCCACGCGTCGCTGGCGCGACGGTGGCTCTCGCCGCATCGAGGTATCTCGAAGGACAAACTCACCACGTATCTCAGACTCTTC
GAATTTCGTCGGAAAATCCTACGCAAACCCGGTCGAAAAGCCCTGAAAGACATCGTTCGAACTGTTCTCTGACTCACCAACAATGTCCTTCACAAGAGCG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
885 bp294 aa88972+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFPVEVFRSEASAANLLEQVRWREGLQCPRCQSESVIKYGSYREYQRYRCKNCGRTFNDKTGTIFAHAKIGLDKLLFAFYSLLRFNTSIRQLDAEIDVSY
RSLHRRVERFARTLDAPQLDLVGPVEIDEFYVSAGKKGRERDQESRSRGLSKRGRGNYDEDKPPVFVLVDRGSDQRYVIPSKSADESAVRLLLDSHEEES
LTVYTDGFRAYDPLETDETYQREAVIHGEGEYVDGDVHVNTCESHASLARRWLSPHRGISKDKLTTYLRLFEFRRKILRKPGRKALKDIVRTVL

 

Blast result :
Comments
ISNagr10 is 92% aa similar to ISHwa6.
References
1] Pfeiffer, F. (2013) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank