ISNpe25

  • Family IS66
  • Group ISBst12
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003373 ND Natrinema pellirubrum
Natrinema pellirubrum DSM 15624 plasmid pNATPE01
DNA section
IS Length : 1626 bp

Ends


IR Length : 15/17

IRL : GTATGTGTTTAGCCCGAGCTGATTTCGGTACTGTCTCGTAGGAAGCGTTC
IRR : GTATGAGTTTACCCCGAAGTCTCGACAGCCGGCACAGCGTGATCCCGTGA

Insertion site


Left flankDirect repeatRight flankDR Length
GAGTCGAATTGGTTTCGATATCGGAGAG8
TCCTGGTTTCCCCTGTCGTTTTGCGGTG8
TTGGTTTCGACGCTGTTCTA0

DNA sequence

GTATGTGTTTAGCCCGAGCTGATTTCGGTACTGTCTCGTAGGAAGCGTTCAACGGACGCGACATGAACAGGCAGCAGACATCGGATACGACTCTCAGGGA
TGGGCTCCGCAGCGGAGCCCATCCCGTTGCCTCTGCTGTCATAACTGGTTGGTGGAGTCTGTGAACGCAGACGATTTCACCAAAGAAGAGCTATTTTCTC
GGTTGCTTCAGCTTGAGCAGCGGGTCGAAGAACTTGAGCAAGAAAACAAGCGGAAGGACAAGAAGATCGATCAGTTGCAAGAGCAACTTGACCAGAAGGA
CGAGCGGATAGAAGAACTCGAAACACGTCTTCGCAAATACGAAAATCCGCATACACCGCCCAGTAAGCGACGGTCGGGGACTGACGAGTCCCCGACCTCG
CAGGACGACGAAGACGAGAATGTTCGAACCGACGGCGGCACTCCTGGACGGAAGGACGGCCATGATCCAGAGTGGCGTGTAACAGCTGGTCCCGACAAAG
AGATCAAAGTCACCCGTGACTGTTGTCCCGAATGTGGCGAACACTTCGACGAGTCGGTGGGCGTCAGCCCCCGACTCGTCGAGGAGGTTCCTGATCCGCA
GCCTCCTGAAGTCACCCAGTACAATCGCCACTGCTACCAGTGCGACTCTTGTGGAACAGAAACTGTTGCTAAACACCCCGACTGCCCCGATGAGGGGCAG
TTCGGGGTGAACGTCATCTCCCAAGCAGCACTTTCTCGGTACGATCACCGCCTTCCCTACCGGAAAATCGCTGATCGCTTCGAGCAACTGCACGGGTTAG
AACTCTCAGGCGCGTCCGCATGGCACGCGACCGAGCGCGCTGCGCGCGCCGGTCGCTGCGAATATGAACAGATTCGAAGACAGATTCAGCAAGCAGAGAT
CGTTCACGTCGACGAAACTGGTATCAAACGCGAGGGTGAGCAAGCATGGATCTGGACGTTTCGGACGGGAGAGCACACGCTGTACGCCGTAAGAGAGAGT
CGTGGGAGCGATGTCCCCGCGGAAGTCCTCGGCGAGGACTTCGCGGGAACGGTCATCTGCGATGGGTGGACGGCGTATCCAGCGTTCACCAGTAATCTTC
AGCGGTGCTGGGCACATCTTCTCCGGGAAGCCGAGGACATTGCTAGTGACCACGAGGAGGCAGAGCCGGTTCACCGGTATCTCAAACAGATGTTCGTCGG
TCTCCAGTCGTGGCTGGAGACCGACCCGAGTCCTCGTGAGAGAGCACAGATGCACCGATCATGCCAGAACGGGCTTAGATCGCTCGTTGAGCGGTCAGTA
ACCGACGAGGCAGTGGCAACACTACTCGGGAAGATCGAAGGAGGGATCGACCACTGGCTCACCTTCGTCGGTGAGCCAGCGGTCTCCCAGACGAACAACG
CAGCTGAGAACGCACTTCGTGAACCAGTCGTTCTCCGGAAAATCATCGGGACACTTCGTAACGATCGAGGTATGTTCGTTCACGAGACGATCTTGTCCCT
GCTGGCGACATGGCGCCAGCAGGGACGCAATCCATACGAAGAACTTCGTCGAGTCGTCAACAACAATGAGATGCTCTCACGGGATCACGCTGTGCCGGCT
GTCGAGACTTCGGGGTAAACTCATAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1458 bp485 aa1611618+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNADDFTKEELFSRLLQLEQRVEELEQENKRKDKKIDQLQEQLDQKDERIEELETRLRKYENPHTPPSKRRSGTDESPTSQDDEDENVRTDGGTPGRKDG
HDPEWRVTAGPDKEIKVTRDCCPECGEHFDESVGVSPRLVEEVPDPQPPEVTQYNRHCYQCDSCGTETVAKHPDCPDEGQFGVNVISQAALSRYDHRLPY
RKIADRFEQLHGLELSGASAWHATERAARAGRCEYEQIRRQIQQAEIVHVDETGIKREGEQAWIWTFRTGEHTLYAVRESRGSDVPAEVLGEDFAGTVIC
DGWTAYPAFTSNLQRCWAHLLREAEDIASDHEEAEPVHRYLKQMFVGLQSWLETDPSPRERAQMHRSCQNGLRSLVERSVTDEAVATLLGKIEGGIDHWL
TFVGEPAVSQTNNAAENALREPVVLRKIIGTLRNDRGMFVHETILSLLATWRQQGRNPYEELRRVVNNNEMLSRDHAVPAVETSG

 

Blast result :
Comments
IS_pep_1 is Natpe_4114, encoded on plasmid pNATPE01.
ISNpe25 is 93% aa similar to ISNpe8.
References
1] Pfeiffer, F. (2013) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank