ISNpe25
- Family IS66
- Group ISBst12
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003373 | ND | Natrinema pellirubrum | Natrinema pellirubrum DSM 15624 plasmid pNATPE01 |
DNA section
IS Length : 1626 bp
Ends
IR Length : 15/17
IRL : GTATGTGTTTAGCCCGAGCTGATTTCGGTACTGTCTCGTAGGAAGCGTTC
IRR : GTATGAGTTTACCCCGAAGTCTCGACAGCCGGCACAGCGTGATCCCGTGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAGTCGAATT | GGTTTCGA | TATCGGAGAG | 8 |
TCCTGGTTTC | CCCTGTCG | TTTTGCGGTG | 8 |
TTGGTTTCGA | CGCTGTTCTA | 0 |
DNA sequence
GTATGTGTTTAGCCCGAGCTGATTTCGGTACTGTCTCGTAGGAAGCGTTCAACGGACGCGACATGAACAGGCAGCAGACATCGGATACGACTCTCAGGGA
TGGGCTCCGCAGCGGAGCCCATCCCGTTGCCTCTGCTGTCATAACTGGTTGGTGGAGTCTGTGAACGCAGACGATTTCACCAAAGAAGAGCTATTTTCTC
GGTTGCTTCAGCTTGAGCAGCGGGTCGAAGAACTTGAGCAAGAAAACAAGCGGAAGGACAAGAAGATCGATCAGTTGCAAGAGCAACTTGACCAGAAGGA
CGAGCGGATAGAAGAACTCGAAACACGTCTTCGCAAATACGAAAATCCGCATACACCGCCCAGTAAGCGACGGTCGGGGACTGACGAGTCCCCGACCTCG
CAGGACGACGAAGACGAGAATGTTCGAACCGACGGCGGCACTCCTGGACGGAAGGACGGCCATGATCCAGAGTGGCGTGTAACAGCTGGTCCCGACAAAG
AGATCAAAGTCACCCGTGACTGTTGTCCCGAATGTGGCGAACACTTCGACGAGTCGGTGGGCGTCAGCCCCCGACTCGTCGAGGAGGTTCCTGATCCGCA
GCCTCCTGAAGTCACCCAGTACAATCGCCACTGCTACCAGTGCGACTCTTGTGGAACAGAAACTGTTGCTAAACACCCCGACTGCCCCGATGAGGGGCAG
TTCGGGGTGAACGTCATCTCCCAAGCAGCACTTTCTCGGTACGATCACCGCCTTCCCTACCGGAAAATCGCTGATCGCTTCGAGCAACTGCACGGGTTAG
AACTCTCAGGCGCGTCCGCATGGCACGCGACCGAGCGCGCTGCGCGCGCCGGTCGCTGCGAATATGAACAGATTCGAAGACAGATTCAGCAAGCAGAGAT
CGTTCACGTCGACGAAACTGGTATCAAACGCGAGGGTGAGCAAGCATGGATCTGGACGTTTCGGACGGGAGAGCACACGCTGTACGCCGTAAGAGAGAGT
CGTGGGAGCGATGTCCCCGCGGAAGTCCTCGGCGAGGACTTCGCGGGAACGGTCATCTGCGATGGGTGGACGGCGTATCCAGCGTTCACCAGTAATCTTC
AGCGGTGCTGGGCACATCTTCTCCGGGAAGCCGAGGACATTGCTAGTGACCACGAGGAGGCAGAGCCGGTTCACCGGTATCTCAAACAGATGTTCGTCGG
TCTCCAGTCGTGGCTGGAGACCGACCCGAGTCCTCGTGAGAGAGCACAGATGCACCGATCATGCCAGAACGGGCTTAGATCGCTCGTTGAGCGGTCAGTA
ACCGACGAGGCAGTGGCAACACTACTCGGGAAGATCGAAGGAGGGATCGACCACTGGCTCACCTTCGTCGGTGAGCCAGCGGTCTCCCAGACGAACAACG
CAGCTGAGAACGCACTTCGTGAACCAGTCGTTCTCCGGAAAATCATCGGGACACTTCGTAACGATCGAGGTATGTTCGTTCACGAGACGATCTTGTCCCT
GCTGGCGACATGGCGCCAGCAGGGACGCAATCCATACGAAGAACTTCGTCGAGTCGTCAACAACAATGAGATGCTCTCACGGGATCACGCTGTGCCGGCT
GTCGAGACTTCGGGGTAAACTCATAC
TGGGCTCCGCAGCGGAGCCCATCCCGTTGCCTCTGCTGTCATAACTGGTTGGTGGAGTCTGTGAACGCAGACGATTTCACCAAAGAAGAGCTATTTTCTC
GGTTGCTTCAGCTTGAGCAGCGGGTCGAAGAACTTGAGCAAGAAAACAAGCGGAAGGACAAGAAGATCGATCAGTTGCAAGAGCAACTTGACCAGAAGGA
CGAGCGGATAGAAGAACTCGAAACACGTCTTCGCAAATACGAAAATCCGCATACACCGCCCAGTAAGCGACGGTCGGGGACTGACGAGTCCCCGACCTCG
CAGGACGACGAAGACGAGAATGTTCGAACCGACGGCGGCACTCCTGGACGGAAGGACGGCCATGATCCAGAGTGGCGTGTAACAGCTGGTCCCGACAAAG
AGATCAAAGTCACCCGTGACTGTTGTCCCGAATGTGGCGAACACTTCGACGAGTCGGTGGGCGTCAGCCCCCGACTCGTCGAGGAGGTTCCTGATCCGCA
GCCTCCTGAAGTCACCCAGTACAATCGCCACTGCTACCAGTGCGACTCTTGTGGAACAGAAACTGTTGCTAAACACCCCGACTGCCCCGATGAGGGGCAG
TTCGGGGTGAACGTCATCTCCCAAGCAGCACTTTCTCGGTACGATCACCGCCTTCCCTACCGGAAAATCGCTGATCGCTTCGAGCAACTGCACGGGTTAG
AACTCTCAGGCGCGTCCGCATGGCACGCGACCGAGCGCGCTGCGCGCGCCGGTCGCTGCGAATATGAACAGATTCGAAGACAGATTCAGCAAGCAGAGAT
CGTTCACGTCGACGAAACTGGTATCAAACGCGAGGGTGAGCAAGCATGGATCTGGACGTTTCGGACGGGAGAGCACACGCTGTACGCCGTAAGAGAGAGT
CGTGGGAGCGATGTCCCCGCGGAAGTCCTCGGCGAGGACTTCGCGGGAACGGTCATCTGCGATGGGTGGACGGCGTATCCAGCGTTCACCAGTAATCTTC
AGCGGTGCTGGGCACATCTTCTCCGGGAAGCCGAGGACATTGCTAGTGACCACGAGGAGGCAGAGCCGGTTCACCGGTATCTCAAACAGATGTTCGTCGG
TCTCCAGTCGTGGCTGGAGACCGACCCGAGTCCTCGTGAGAGAGCACAGATGCACCGATCATGCCAGAACGGGCTTAGATCGCTCGTTGAGCGGTCAGTA
ACCGACGAGGCAGTGGCAACACTACTCGGGAAGATCGAAGGAGGGATCGACCACTGGCTCACCTTCGTCGGTGAGCCAGCGGTCTCCCAGACGAACAACG
CAGCTGAGAACGCACTTCGTGAACCAGTCGTTCTCCGGAAAATCATCGGGACACTTCGTAACGATCGAGGTATGTTCGTTCACGAGACGATCTTGTCCCT
GCTGGCGACATGGCGCCAGCAGGGACGCAATCCATACGAAGAACTTCGTCGAGTCGTCAACAACAATGAGATGCTCTCACGGGATCACGCTGTGCCGGCT
GTCGAGACTTCGGGGTAAACTCATAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1458 bp | 485 aa | 161 | 1618 | + | No |
Chemistry : DDE
ORF sequence :
MNADDFTKEELFSRLLQLEQRVEELEQENKRKDKKIDQLQEQLDQKDERIEELETRLRKYENPHTPPSKRRSGTDESPTSQDDEDENVRTDGGTPGRKDG
HDPEWRVTAGPDKEIKVTRDCCPECGEHFDESVGVSPRLVEEVPDPQPPEVTQYNRHCYQCDSCGTETVAKHPDCPDEGQFGVNVISQAALSRYDHRLPY
RKIADRFEQLHGLELSGASAWHATERAARAGRCEYEQIRRQIQQAEIVHVDETGIKREGEQAWIWTFRTGEHTLYAVRESRGSDVPAEVLGEDFAGTVIC
DGWTAYPAFTSNLQRCWAHLLREAEDIASDHEEAEPVHRYLKQMFVGLQSWLETDPSPRERAQMHRSCQNGLRSLVERSVTDEAVATLLGKIEGGIDHWL
TFVGEPAVSQTNNAAENALREPVVLRKIIGTLRNDRGMFVHETILSLLATWRQQGRNPYEELRRVVNNNEMLSRDHAVPAVETSG
HDPEWRVTAGPDKEIKVTRDCCPECGEHFDESVGVSPRLVEEVPDPQPPEVTQYNRHCYQCDSCGTETVAKHPDCPDEGQFGVNVISQAALSRYDHRLPY
RKIADRFEQLHGLELSGASAWHATERAARAGRCEYEQIRRQIQQAEIVHVDETGIKREGEQAWIWTFRTGEHTLYAVRESRGSDVPAEVLGEDFAGTVIC
DGWTAYPAFTSNLQRCWAHLLREAEDIASDHEEAEPVHRYLKQMFVGLQSWLETDPSPRERAQMHRSCQNGLRSLVERSVTDEAVATLLGKIEGGIDHWL
TFVGEPAVSQTNNAAENALREPVVLRKIIGTLRNDRGMFVHETILSLLATWRQQGRNPYEELRRVVNNNEMLSRDHAVPAVETSG
Blast result :
Comments
IS_pep_1 is Natpe_4114, encoded on plasmid pNATPE01.
ISNpe25 is 93% aa similar to ISNpe8.
ISNpe25 is 93% aa similar to ISNpe8.
References
1] Pfeiffer, F. (2013) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank