ISNpe23
- Family IS1595
- Group ISH4
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP003372 | ND | Natrinema pellirubrum | Natrinema pellirubrum DSM 15624 |
DNA section
IS Length : 1001 bp
Ends
IR Length : 21/25
IRL : CGCTCATCCGTAGGTGATTGTTGATACTACTGAGCGGTCGCTGTGGAGTC
IRR : CGCTCTTGCGTAGTTCATTGTTGATTTCAGAGTGTTGCTCGAATAGCGTG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TGAGTTATCT | TTCGACGA | ATATTCACCG | 8 |
DNA sequence
CGCTCATCCGTAGGTGATTGTTGATACTACTGAGCGGTCGCTGTGGAGTCGAAGAGGACAAGGGCACCGCGTCAGCGGTGTCCGACACGAATGATTCCGC
TAGATGTGTTCGGGTCGGAATCGATCGCAGTGGACCTGCTGCAACAGGTTCGCTGGCGTGACGGTGTTACCTGTCCTCGCTGCCGTTCTGACCGTACGGT
CAGAAACGGCAGCTACAGAGAGTTTCAACGATATCTCTGTAAGAATTGCGACCGCACGTTCAACGACAAGACAGGCACGATCTTCGCTCACTCGAAGATT
GCGCTCCGTCGGTGGCTGTTCTCGACCTACGCGTTTCTCCGCTTTAACACGAGTTTTCGGCAGCTACAGTACGAAATCGAGGTGACACACAAGACGATCC
ACCGGCGCATCGAGCGCTCTGGTGAAGCGCTCGATGCGCCTTCCCTCGATCTTGTCGGACCAGTCGAAATCGACGAAGTGTACGTCTCTGCTGGGAAGAA
AGGCCGCGAGCGCGACCAACCGTCGCGCTCGCGTGGCCTGTCCACGCGTGGACGTGGTCTATATGATGGCGACAAGCCACCCGTGTTCATTCTCGCTGAC
CGCGGAACTGGACAGCGGTACGTGATCCCAGCGAAAGCCGCCGACGAATCGACGATTCGACTCCTCTTGGCAGACCGCCAAGAGGAGCCGTTGACTGTCT
ATACTGACGTCTTTCGAGCGTACGAGCCACTCGAAGCGGACGACGCATTCACCCGTGAATACGTCGTCCACGGTGACGGTGAATACGCCGACGAAGAGGT
CCACGTCAATACCTGCGAGAGCCACGCGTCGCTGACGCGACGGTGGCTCTCGCCCCATCGAGGTATCTCGAAAGATAAGCTGACACAGTATCTCAGAGCG
TTCCAGCTACGCCGAGAACTATATCGAAAACCGGGACGAGACGCACTCAAACACGCTATTCGAGCAACACTCTGAAATCAACAATGAACTACGCAAGAGC
G
TAGATGTGTTCGGGTCGGAATCGATCGCAGTGGACCTGCTGCAACAGGTTCGCTGGCGTGACGGTGTTACCTGTCCTCGCTGCCGTTCTGACCGTACGGT
CAGAAACGGCAGCTACAGAGAGTTTCAACGATATCTCTGTAAGAATTGCGACCGCACGTTCAACGACAAGACAGGCACGATCTTCGCTCACTCGAAGATT
GCGCTCCGTCGGTGGCTGTTCTCGACCTACGCGTTTCTCCGCTTTAACACGAGTTTTCGGCAGCTACAGTACGAAATCGAGGTGACACACAAGACGATCC
ACCGGCGCATCGAGCGCTCTGGTGAAGCGCTCGATGCGCCTTCCCTCGATCTTGTCGGACCAGTCGAAATCGACGAAGTGTACGTCTCTGCTGGGAAGAA
AGGCCGCGAGCGCGACCAACCGTCGCGCTCGCGTGGCCTGTCCACGCGTGGACGTGGTCTATATGATGGCGACAAGCCACCCGTGTTCATTCTCGCTGAC
CGCGGAACTGGACAGCGGTACGTGATCCCAGCGAAAGCCGCCGACGAATCGACGATTCGACTCCTCTTGGCAGACCGCCAAGAGGAGCCGTTGACTGTCT
ATACTGACGTCTTTCGAGCGTACGAGCCACTCGAAGCGGACGACGCATTCACCCGTGAATACGTCGTCCACGGTGACGGTGAATACGCCGACGAAGAGGT
CCACGTCAATACCTGCGAGAGCCACGCGTCGCTGACGCGACGGTGGCTCTCGCCCCATCGAGGTATCTCGAAAGATAAGCTGACACAGTATCTCAGAGCG
TTCCAGCTACGCCGAGAACTATATCGAAAACCGGGACGAGACGCACTCAAACACGCTATTCGAGCAACACTCTGAAATCAACAATGAACTACGCAAGAGC
G
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 885 bp | 294 aa | 91 | 975 | + | No |
Chemistry : DDE
ORF sequence :
MIPLDVFGSESIAVDLLQQVRWRDGVTCPRCRSDRTVRNGSYREFQRYLCKNCDRTFNDKTGTIFAHSKIALRRWLFSTYAFLRFNTSFRQLQYEIEVTH
KTIHRRIERSGEALDAPSLDLVGPVEIDEVYVSAGKKGRERDQPSRSRGLSTRGRGLYDGDKPPVFILADRGTGQRYVIPAKAADESTIRLLLADRQEEP
LTVYTDVFRAYEPLEADDAFTREYVVHGDGEYADEEVHVNTCESHASLTRRWLSPHRGISKDKLTQYLRAFQLRRELYRKPGRDALKHAIRATL
KTIHRRIERSGEALDAPSLDLVGPVEIDEVYVSAGKKGRERDQPSRSRGLSTRGRGLYDGDKPPVFILADRGTGQRYVIPAKAADESTIRLLLADRQEEP
LTVYTDVFRAYEPLEADDAFTREYVVHGDGEYADEEVHVNTCESHASLTRRWLSPHRGISKDKLTQYLRAFQLRRELYRKPGRDALKHAIRATL
Blast result :
Comments
ISNpe23 is 93% aa similar to ISHma4.
References
1] F. Pfeiffer (2013) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank.
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank.