ISNpe24

  • Family IS66
  • Group ISBst12
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003372 ND Natrinema pellirubrum
Natrinema pellirubrum DSM 15624
Natrinema pellirubrum DSM 15624 plasmid pNATPE01
DNA section
IS Length : 1605 bp

Ends


IR Length : 17/18

IRL : GTATGTGTTTAGCCCGAGCTGATTTCGCCACCATCTCATAGGAGGCGCAC
IRR : GTATGTGTTTACCCCGAGGTCTCGACAGCCGGCACAGCGTGAGCCCGTGA

Insertion site


Left flankDirect repeatRight flankDR Length
CTCGCGAACATACACGAAAGAAAGAACGACAC8
AATCAAGATTTTATTATAGGTATGGCTTGGCC8

DNA sequence

GTATGTGTTTAGCCCGAGCTGATTTCGCCACCATCTCATAGGAGGCGCACAAATCGGGCTGTATGAGCTGGCAGCGGAGGTTCGTGATGATCCACAGGGA
TGGGCTCCGTCGCGGAGCCCATCCCGTTGCCTCCGCTGTCTGTACTGGAAGGTGGGATCTGTGAACGGAGATGATCTCACCAAGGACGAGTTGCTCTCCC
GGTTTTTGCAACTTGAACAACGAGTCGAAGAGCTTGAACAAGAGAACACACAGCTCCGAGAGAAGTTGCAAGAGAAAGACGAGCGGGTCGAAGAACTCGA
AACACGTCTTCGCAAATACGAGAATCCGCACACTCCACCCAGCAAGCGACGGTCGGGGACCGATGAGTCCCCGACCTCGCAGGACGACGAAGACGACGAT
GTCCGAACTGATGGCGGTACTCCTGGTCGAAAGGACGGTCACGATCCGGAGTGGCGTTCTACAGCTGATCCCGACGAAGAAATCGAAGTCACCTGTGACT
GTTGTCCTGAGTGTGGCGACCACTTCGACGAGTCGGTGGGCGTCAGCCCCCGACTCGTCGAGGAGATTCCTGATCCGCAGCCCCCAGAAATCACCCGGTA
CAACCGCCACTACTACCAGTGCGATTCCTGTGGAACAGAGACAGTTGCGGCTCACCCCGACTGCCCCGATGAGGGGCAGTTCGGGGTGAACGTCATCGCT
CAATCAGCTCTGTCACGGTACGATCATCGCCTTCCCTACCGGAAGATCGCTGACCGCTTCGAGCAACTGCATGGACTCGAACTCTCGGGTGCATCCGCGT
GGCACGCGACCGAGCGCGCTGCGCGCGCCGGTCGCTGTGAGTACGACCAGATCCGTCAAGAGATCCAAGATGCCGACGTGGTTCATATCGACGAAACAGG
TATCAAACGTGAGGGTGAGCAGGCGTGGATCTGGACGTTCAAGACCGCTCAGCATACGTTATACGCGGTCAGAGAGAGTCGTGGAAGTGATGTTCCCGCG
GAAGTCCTCGGTGAGGACTTCGCGGGAACGGTCATCTGTGACGGGTGGACGGCGTACCCAGCTTTCAGCAGCAACCTCCAGCGGTGTTGGGCGCACATTC
TTCGAGAGGCTGAAGACGCCGCGGAAAAGCAGGCAGAAGGTGAACCGATCTACCACGCTCTCAGACAGGTGTACGTCGCTCTCCAGGCCCGGCTGGAGAG
CGACTTGACAGTCCGTGAGCGAGCAGACCTCCAGCGTGTGGCGCGAAGAGAGCTTGAATCGCTGATTGAACGGTCAGTACCCGACGGACCAGTGGCAACA
CTGCTCGGGAAGATCGAAGGAGGTCTTGACCACTGGCTCACCTTCGTCGGTGAGCCAGCGGTCTCTCCGACGAACAATGCCGCAGAGAACGCGCTTCGTG
AACCAGTGGTTCTCCGGAAAATCATCGGAACGCTCCGTAATGACCGAGGAATGTTCGTTCACGAGACGATCTTGTCCCTGCTGGCGACGTGGCGCCAGCA
GGGACGCAATCCATACGAAGAGCTTCGTCGAGTCGTCAGCAGCAATGATATGATCTCACGGGCTCACGCTGTGCCGGCTGTCGAGACCTCGGGGTAAACA
CATAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1446 bp481 aa1521597+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGSVNGDDLTKDELLSRFLQLEQRVEELEQENTQLREKLQEKDERVEELETRLRKYENPHTPPSKRRSGTDESPTSQDDEDDDVRTDGGTPGRKDGHDPE
WRSTADPDEEIEVTCDCCPECGDHFDESVGVSPRLVEEIPDPQPPEITRYNRHYYQCDSCGTETVAAHPDCPDEGQFGVNVIAQSALSRYDHRLPYRKIA
DRFEQLHGLELSGASAWHATERAARAGRCEYDQIRQEIQDADVVHIDETGIKREGEQAWIWTFKTAQHTLYAVRESRGSDVPAEVLGEDFAGTVICDGWT
AYPAFSSNLQRCWAHILREAEDAAEKQAEGEPIYHALRQVYVALQARLESDLTVRERADLQRVARRELESLIERSVPDGPVATLLGKIEGGLDHWLTFVG
EPAVSPTNNAAENALREPVVLRKIIGTLRNDRGMFVHETILSLLATWRQQGRNPYEELRRVVSSNDMISRAHAVPAVETSG

 

Blast result :
Comments
IS_pep_1 is Natpe_1918 and Natpe_4018, encoded on the chromosome and on plasmid pNATPE01.
ISNpe24 is 97% aa similar to ISH10.
References
1] Pfeiffer, F. (2013) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank