ISNpe24
- Family IS66
- Group ISBst12
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003372 | ND | Natrinema pellirubrum | Natrinema pellirubrum DSM 15624 Natrinema pellirubrum DSM 15624 plasmid pNATPE01 |
DNA section
IS Length : 1605 bp
Ends
IR Length : 17/18
IRL : GTATGTGTTTAGCCCGAGCTGATTTCGCCACCATCTCATAGGAGGCGCAC
IRR : GTATGTGTTTACCCCGAGGTCTCGACAGCCGGCACAGCGTGAGCCCGTGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTCGCGAACATA | CACGAAAG | AAAGAACGACAC | 8 |
AATCAAGATTTT | ATTATAGG | TATGGCTTGGCC | 8 |
DNA sequence
GTATGTGTTTAGCCCGAGCTGATTTCGCCACCATCTCATAGGAGGCGCACAAATCGGGCTGTATGAGCTGGCAGCGGAGGTTCGTGATGATCCACAGGGA
TGGGCTCCGTCGCGGAGCCCATCCCGTTGCCTCCGCTGTCTGTACTGGAAGGTGGGATCTGTGAACGGAGATGATCTCACCAAGGACGAGTTGCTCTCCC
GGTTTTTGCAACTTGAACAACGAGTCGAAGAGCTTGAACAAGAGAACACACAGCTCCGAGAGAAGTTGCAAGAGAAAGACGAGCGGGTCGAAGAACTCGA
AACACGTCTTCGCAAATACGAGAATCCGCACACTCCACCCAGCAAGCGACGGTCGGGGACCGATGAGTCCCCGACCTCGCAGGACGACGAAGACGACGAT
GTCCGAACTGATGGCGGTACTCCTGGTCGAAAGGACGGTCACGATCCGGAGTGGCGTTCTACAGCTGATCCCGACGAAGAAATCGAAGTCACCTGTGACT
GTTGTCCTGAGTGTGGCGACCACTTCGACGAGTCGGTGGGCGTCAGCCCCCGACTCGTCGAGGAGATTCCTGATCCGCAGCCCCCAGAAATCACCCGGTA
CAACCGCCACTACTACCAGTGCGATTCCTGTGGAACAGAGACAGTTGCGGCTCACCCCGACTGCCCCGATGAGGGGCAGTTCGGGGTGAACGTCATCGCT
CAATCAGCTCTGTCACGGTACGATCATCGCCTTCCCTACCGGAAGATCGCTGACCGCTTCGAGCAACTGCATGGACTCGAACTCTCGGGTGCATCCGCGT
GGCACGCGACCGAGCGCGCTGCGCGCGCCGGTCGCTGTGAGTACGACCAGATCCGTCAAGAGATCCAAGATGCCGACGTGGTTCATATCGACGAAACAGG
TATCAAACGTGAGGGTGAGCAGGCGTGGATCTGGACGTTCAAGACCGCTCAGCATACGTTATACGCGGTCAGAGAGAGTCGTGGAAGTGATGTTCCCGCG
GAAGTCCTCGGTGAGGACTTCGCGGGAACGGTCATCTGTGACGGGTGGACGGCGTACCCAGCTTTCAGCAGCAACCTCCAGCGGTGTTGGGCGCACATTC
TTCGAGAGGCTGAAGACGCCGCGGAAAAGCAGGCAGAAGGTGAACCGATCTACCACGCTCTCAGACAGGTGTACGTCGCTCTCCAGGCCCGGCTGGAGAG
CGACTTGACAGTCCGTGAGCGAGCAGACCTCCAGCGTGTGGCGCGAAGAGAGCTTGAATCGCTGATTGAACGGTCAGTACCCGACGGACCAGTGGCAACA
CTGCTCGGGAAGATCGAAGGAGGTCTTGACCACTGGCTCACCTTCGTCGGTGAGCCAGCGGTCTCTCCGACGAACAATGCCGCAGAGAACGCGCTTCGTG
AACCAGTGGTTCTCCGGAAAATCATCGGAACGCTCCGTAATGACCGAGGAATGTTCGTTCACGAGACGATCTTGTCCCTGCTGGCGACGTGGCGCCAGCA
GGGACGCAATCCATACGAAGAGCTTCGTCGAGTCGTCAGCAGCAATGATATGATCTCACGGGCTCACGCTGTGCCGGCTGTCGAGACCTCGGGGTAAACA
CATAC
TGGGCTCCGTCGCGGAGCCCATCCCGTTGCCTCCGCTGTCTGTACTGGAAGGTGGGATCTGTGAACGGAGATGATCTCACCAAGGACGAGTTGCTCTCCC
GGTTTTTGCAACTTGAACAACGAGTCGAAGAGCTTGAACAAGAGAACACACAGCTCCGAGAGAAGTTGCAAGAGAAAGACGAGCGGGTCGAAGAACTCGA
AACACGTCTTCGCAAATACGAGAATCCGCACACTCCACCCAGCAAGCGACGGTCGGGGACCGATGAGTCCCCGACCTCGCAGGACGACGAAGACGACGAT
GTCCGAACTGATGGCGGTACTCCTGGTCGAAAGGACGGTCACGATCCGGAGTGGCGTTCTACAGCTGATCCCGACGAAGAAATCGAAGTCACCTGTGACT
GTTGTCCTGAGTGTGGCGACCACTTCGACGAGTCGGTGGGCGTCAGCCCCCGACTCGTCGAGGAGATTCCTGATCCGCAGCCCCCAGAAATCACCCGGTA
CAACCGCCACTACTACCAGTGCGATTCCTGTGGAACAGAGACAGTTGCGGCTCACCCCGACTGCCCCGATGAGGGGCAGTTCGGGGTGAACGTCATCGCT
CAATCAGCTCTGTCACGGTACGATCATCGCCTTCCCTACCGGAAGATCGCTGACCGCTTCGAGCAACTGCATGGACTCGAACTCTCGGGTGCATCCGCGT
GGCACGCGACCGAGCGCGCTGCGCGCGCCGGTCGCTGTGAGTACGACCAGATCCGTCAAGAGATCCAAGATGCCGACGTGGTTCATATCGACGAAACAGG
TATCAAACGTGAGGGTGAGCAGGCGTGGATCTGGACGTTCAAGACCGCTCAGCATACGTTATACGCGGTCAGAGAGAGTCGTGGAAGTGATGTTCCCGCG
GAAGTCCTCGGTGAGGACTTCGCGGGAACGGTCATCTGTGACGGGTGGACGGCGTACCCAGCTTTCAGCAGCAACCTCCAGCGGTGTTGGGCGCACATTC
TTCGAGAGGCTGAAGACGCCGCGGAAAAGCAGGCAGAAGGTGAACCGATCTACCACGCTCTCAGACAGGTGTACGTCGCTCTCCAGGCCCGGCTGGAGAG
CGACTTGACAGTCCGTGAGCGAGCAGACCTCCAGCGTGTGGCGCGAAGAGAGCTTGAATCGCTGATTGAACGGTCAGTACCCGACGGACCAGTGGCAACA
CTGCTCGGGAAGATCGAAGGAGGTCTTGACCACTGGCTCACCTTCGTCGGTGAGCCAGCGGTCTCTCCGACGAACAATGCCGCAGAGAACGCGCTTCGTG
AACCAGTGGTTCTCCGGAAAATCATCGGAACGCTCCGTAATGACCGAGGAATGTTCGTTCACGAGACGATCTTGTCCCTGCTGGCGACGTGGCGCCAGCA
GGGACGCAATCCATACGAAGAGCTTCGTCGAGTCGTCAGCAGCAATGATATGATCTCACGGGCTCACGCTGTGCCGGCTGTCGAGACCTCGGGGTAAACA
CATAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1446 bp | 481 aa | 152 | 1597 | + | No |
Chemistry : DDE
ORF sequence :
MGSVNGDDLTKDELLSRFLQLEQRVEELEQENTQLREKLQEKDERVEELETRLRKYENPHTPPSKRRSGTDESPTSQDDEDDDVRTDGGTPGRKDGHDPE
WRSTADPDEEIEVTCDCCPECGDHFDESVGVSPRLVEEIPDPQPPEITRYNRHYYQCDSCGTETVAAHPDCPDEGQFGVNVIAQSALSRYDHRLPYRKIA
DRFEQLHGLELSGASAWHATERAARAGRCEYDQIRQEIQDADVVHIDETGIKREGEQAWIWTFKTAQHTLYAVRESRGSDVPAEVLGEDFAGTVICDGWT
AYPAFSSNLQRCWAHILREAEDAAEKQAEGEPIYHALRQVYVALQARLESDLTVRERADLQRVARRELESLIERSVPDGPVATLLGKIEGGLDHWLTFVG
EPAVSPTNNAAENALREPVVLRKIIGTLRNDRGMFVHETILSLLATWRQQGRNPYEELRRVVSSNDMISRAHAVPAVETSG
WRSTADPDEEIEVTCDCCPECGDHFDESVGVSPRLVEEIPDPQPPEITRYNRHYYQCDSCGTETVAAHPDCPDEGQFGVNVIAQSALSRYDHRLPYRKIA
DRFEQLHGLELSGASAWHATERAARAGRCEYDQIRQEIQDADVVHIDETGIKREGEQAWIWTFKTAQHTLYAVRESRGSDVPAEVLGEDFAGTVICDGWT
AYPAFSSNLQRCWAHILREAEDAAEKQAEGEPIYHALRQVYVALQARLESDLTVRERADLQRVARRELESLIERSVPDGPVATLLGKIEGGLDHWLTFVG
EPAVSPTNNAAENALREPVVLRKIIGTLRNDRGMFVHETILSLLATWRQQGRNPYEELRRVVSSNDMISRAHAVPAVETSG
Blast result :
Comments
IS_pep_1 is Natpe_1918 and Natpe_4018, encoded on the chromosome and on plasmid pNATPE01.
ISNpe24 is 97% aa similar to ISH10.
ISNpe24 is 97% aa similar to ISH10.
References
1] Pfeiffer, F. (2013) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank