ISNpe21
- Family IS1595
- Group ISH4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003372 | ND | Natrinema pellirubrum | Natrinema pellirubrum DSM 15624 |
DNA section
IS Length : 1001 bp
Ends
IR Length : 20/24
IRL : CGCTCTTCTGTAGGAGATTGTTGACGCCGCTTAGCTGTCGCTGTCGAATC
IRR : CGCTCTTGTGTAGCACTTTGTTGATCTCACAGCGTAGCTTTGATAGCGTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATTAGTCTCA | ATTGATGAAT | 0 | |
CACTGACTAT | TTCGATAT | AATCTATCAC | 8 |
CCGGGACAGT | AACGTCATA | AGTCAGGGTC | 9 |
DNA sequence
CGCTCTTCTGTAGGAGATTGTTGACGCCGCTTAGCTGTCGCTGTCGAATCGAAGAGAGCAAGGACACCGCGTCAGCGGTGTCCGTTAGGCATGATTCCGC
TAGATGTGTTTGGGTCGGAATCGGTCGCAGCGGACCTGTTGGAGCAGGTTCGCTGGCGTAACGGTGTTACTTGCCCTCGCTGCCGTTCTGACCGAACGGT
CAAGAACGGCAGCTATGGGAACTTTCAGCGCTATCTCTGTAAGAATTGCGACCGCACATTCAACGACAAGACCGGCACGATTTTCGCCCATTCGAAGGTT
GCACTCAGAAAGTGGCTGTTCTCGATTTACGCGTTTCTCCGGTTTAACACGAGTCTTCGCCAACTTCAGCTAGAAATCGACGTTCAGTACAAAACGATTT
ACCAGCGCGTCGAGCGCTTCACGAAGGCGCTCGACGCGCCTTCGATCGACCTCGTCGGTCCCGTTGAAATCGACGAAGTCTACGTTTCTGCAGGGCTGAA
AGGCCGCGAGCGCGACGCTCGGTCGCGCTCGCGTGGCCTGTCCACGCGTGGACGAGGATCGTACGATCAGGACAAACCGCCGGTGTTCACGATCGTCGAT
CGCGGCACCGACAATCGGTACGTGATCCCCGCGAAATCCGCCGACGAATCAACGGTTCGGCTCCTTCTCGCAAACCGCAAGAAGGAGCCACTGACCGTCT
ACACCGACGGATTTCGTGTCTACGACCCACTCAACGAGGACGACGCATTCGAGCGCGAATACGTCGTCCACGGCGACGGCGAATACGCGGATGAAGATGT
CCACGTCAATACCTGCGAGAGCCACGGATCGCTGCTGCGACCGTGGCTCTCGCCTCATCGAGGCGTCTCAAAAGATAAGCTCACACAGTATCTCCGAGCG
TTCCAGCTTCGACGAAAACTACTGCGGAAACCGGGAAGAGAAGCGCTCAAACACGCTATCAAAGCTACGCTGTGAGATCAACAAAGTGCTACACAAGAGC
G
TAGATGTGTTTGGGTCGGAATCGGTCGCAGCGGACCTGTTGGAGCAGGTTCGCTGGCGTAACGGTGTTACTTGCCCTCGCTGCCGTTCTGACCGAACGGT
CAAGAACGGCAGCTATGGGAACTTTCAGCGCTATCTCTGTAAGAATTGCGACCGCACATTCAACGACAAGACCGGCACGATTTTCGCCCATTCGAAGGTT
GCACTCAGAAAGTGGCTGTTCTCGATTTACGCGTTTCTCCGGTTTAACACGAGTCTTCGCCAACTTCAGCTAGAAATCGACGTTCAGTACAAAACGATTT
ACCAGCGCGTCGAGCGCTTCACGAAGGCGCTCGACGCGCCTTCGATCGACCTCGTCGGTCCCGTTGAAATCGACGAAGTCTACGTTTCTGCAGGGCTGAA
AGGCCGCGAGCGCGACGCTCGGTCGCGCTCGCGTGGCCTGTCCACGCGTGGACGAGGATCGTACGATCAGGACAAACCGCCGGTGTTCACGATCGTCGAT
CGCGGCACCGACAATCGGTACGTGATCCCCGCGAAATCCGCCGACGAATCAACGGTTCGGCTCCTTCTCGCAAACCGCAAGAAGGAGCCACTGACCGTCT
ACACCGACGGATTTCGTGTCTACGACCCACTCAACGAGGACGACGCATTCGAGCGCGAATACGTCGTCCACGGCGACGGCGAATACGCGGATGAAGATGT
CCACGTCAATACCTGCGAGAGCCACGGATCGCTGCTGCGACCGTGGCTCTCGCCTCATCGAGGCGTCTCAAAAGATAAGCTCACACAGTATCTCCGAGCG
TTCCAGCTTCGACGAAAACTACTGCGGAAACCGGGAAGAGAAGCGCTCAAACACGCTATCAAAGCTACGCTGTGAGATCAACAAAGTGCTACACAAGAGC
G
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
885 bp | 294 aa | 91 | 975 | + | No |
Chemistry : DDE
ORF sequence :
MIPLDVFGSESVAADLLEQVRWRNGVTCPRCRSDRTVKNGSYGNFQRYLCKNCDRTFNDKTGTIFAHSKVALRKWLFSIYAFLRFNTSLRQLQLEIDVQY
KTIYQRVERFTKALDAPSIDLVGPVEIDEVYVSAGLKGRERDARSRSRGLSTRGRGSYDQDKPPVFTIVDRGTDNRYVIPAKSADESTVRLLLANRKKEP
LTVYTDGFRVYDPLNEDDAFEREYVVHGDGEYADEDVHVNTCESHGSLLRPWLSPHRGVSKDKLTQYLRAFQLRRKLLRKPGREALKHAIKATL
KTIYQRVERFTKALDAPSIDLVGPVEIDEVYVSAGLKGRERDARSRSRGLSTRGRGSYDQDKPPVFTIVDRGTDNRYVIPAKSADESTVRLLLANRKKEP
LTVYTDGFRVYDPLNEDDAFEREYVVHGDGEYADEDVHVNTCESHGSLLRPWLSPHRGVSKDKLTQYLRAFQLRRKLLRKPGREALKHAIKATL
Blast result :
Comments
ISNpe21 i 97% aa similar to ISNma3.
References
1] F. Pfeiffer (2013) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank.
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank.