ISNpe17

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003372 ND Natrinema pellirubrum
Natrinema pellirubrum DSM 15624
Natrinema pellirubrum DSM 15624 plasmid pNATPE01
DNA section
IS Length : 1069 bp

Ends


IR Length : 23/28

IRL : GAGGATGTCATAGAACAGTTCTCATACCAGAGAGCAGGGTGAACGCTGAG
IRR : GAGGGTGTCATAGAACTCTTGTCACACCGTGATGATCGTGCTTCCCGGAT

Insertion site


Left flankDirect repeatRight flankDR Length
AGCAATTTCTTCATCTATTGCTTGAATCC9
TGGTGTTCACGAGGGGCGATGTGTAACTCT10

DNA sequence

GAGGATGTCATAGAACAGTTCTCATACCAGAGAGCAGGGTGAACGCTGAGGTGGTATGAGCCCAGCGACCCTGCAAGAGAATCCTACGGTAGAGACGTTC
TTCAATGTCGTGGAAACTGAGACACTAGCGCTGTTTGAGCATCTCTCCTTCGAGTTTCTCGAAGAGTTCGACGTGTTCGCCCCGGCGCAGACGGGGCGAA
CACGAGTTCACAAACCACCCGAAATGATGCGTGGGTTTCTGCACTGCTACTACAAGGATATCTACGGCATTCGTCCGGTTGCACGAGAACTGAACAACAC
AGTCGTCTGGCTCAGCTGTGGCTTCGATCGACCGCCGTCCAGAGACGCGGTCGATCGCTTTCTCACCGATCTCGAACACGTCATCGACAAGATTTTCGAC
CACCTCGTCGAGCAGGCCGCCTTGCGCGGCCTGCTCGACTTGACCTACTCGATTGATTCGACAGACGTGAGAACGATGCCTGCCGATCCTGACGCATCGA
AATGCTACGATCCAACGGCTGAAGAGTACTACTACGGCTACGGCTGCACGATCGTTTCGACCGGCTCGAAGATCCCGATTGCAGCGGAGTTCACCGAGAG
CAAACAAGCACCAGAGGAGACGGCGATGCGCGTCACCCGTGACGCGCTCGCCGTCGCTAAACCGATATGGATGCTTGGTGACAGCGCCTACGATACACTT
GACTGGCACGACCACCTGCTGGCCGCAGGGGTCGTGCCAGTCGCCCCCTACAACCCACGGAACACTGATGACCCGAAGGACATCGAGTACAGGGTCGAAG
ACCGCATCGAACAACACAGCGAGGACGTTCAGCTGAAGCAATCGACGCTAAACGAGACGTACAACCGCCGAACAGGCGTCGAACGAACCAACGAATCAGT
CAAGGGCTGCGGCCTCGGGCGAACGCACGCCCGAGGCCGCGTCCACGCACGAGCACAGGTGTTCCTCGCGCTGTGCCTTCGCCTCGTTATTGCAATCACC
AACTATGAACGCGGAGACAATCCGGGAAGCACGATCATCACGGTGTGACAAGAGTTCTATGACACCCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
993 bp330 aa561048+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSPATLQENPTVETFFNVVETETLALFEHLSFEFLEEFDVFAPAQTGRTRVHKPPEMMRGFLHCYYKDIYGIRPVARELNNTVVWLSCGFDRPPSRDAVD
RFLTDLEHVIDKIFDHLVEQAALRGLLDLTYSIDSTDVRTMPADPDASKCYDPTAEEYYYGYGCTIVSTGSKIPIAAEFTESKQAPEETAMRVTRDALAV
AKPIWMLGDSAYDTLDWHDHLLAAGVVPVAPYNPRNTDDPKDIEYRVEDRIEQHSEDVQLKQSTLNETYNRRTGVERTNESVKGCGLGRTHARGRVHARA
QVFLALCLRLVIAITNYERGDNPGSTIITV

 

Blast result :
Comments
ISNpe17 is 96% aa similar to ISH11.
References
1] Pfeiffer, F. (2013) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank