ISNpe16
- Family IS5
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003372 | ND | Natrinema pellirubrum | Natrinema pellirubrum DSM 15624 |
DNA section
IS Length : 1069 bp
Ends
IR Length : 24/28
IRL : GAGGGTGTCATAGAACAGTTCTCATACCAGAGAGCAGGGTGAACGCTGAG
IRR : GAGGGTGTCATAGAACTCTTGTCACACCGTGATGATCGTGCTTCCCGGAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AACCAATGAC | GTTTTT | GTCAACTCGC | 6 |
ATAAATAGAC | TACATA | GGTAAGACGG | 6 |
TGTACTTACT | ATCACAGTC | ACTAACGGTT | 9 |
CATCTTTGTC | GACGCCGTACAC | GGTATACGTA | 12 |
DNA sequence
GAGGGTGTCATAGAACAGTTCTCATACCAGAGAGCAGGGTGAACGCTGAGGTGGTATGAGCCCAGCGACCCTGCAAGATAATCCTACGGTAGAGACGTTC
TTCAATGCCGTGGAGACGGAGACGCTAGCGCTGTTCGAGCATCTCTCCTTCGAGTTTCTCGAAGAATTCGACGTGTTCGCCCCGGCGGAGACGGGGCGAA
CACGAGACCACGAACCACCCGAGATGATGCGTGGGTTTCTGCACTGCTACTACAAGGATATCTACGGCATTCGTCCGGTTGCGCGAGAACTGAACAACAC
AGTCGTCTGGCTCAGCTGTGGCTTCGATCGACCGCCGTCGAGAGACGCGGTCGATCGTTTCCTCACCGATCTCGAACACGTCATCGACGAGATTTTCGAC
CACCTCGTCGAGCAGGCCGCCTTGCGGGGCCTGCTCGACTTGACCTACTCGATTGATTCGACAGACGTGAGAACGATGCCAGCCGATCAAGACGCGTCGA
AATGCTACGATCCAACGGCTGAAGAGTACTACTACGGCTACGGCTGCACGATCGTTTCGACTGGTTCAAAGATCCCGATTGCAGCGGAATTCACCGAGAG
CAAACAAGCGCCAGAAGAGACGGCGATGCGCGTCACGCGTGACGCGCTCGCCGTCGACACTCCGATCTGGATGCTTGGAGACAGCGCCTATGACACACTC
GATTGGCACGACTACCTGCTGACCGCAGGAGTCGTGCCAATCGCCCCGTACAACGCACGCAACACCGACGATCCACTGGACATAGAGTACAGGGTCGAAG
ACCGTATCAAAGAACACAGCAAGGACGTGAAGTTGAAGCAATCGACGTTAGATGAGACGTACAACCGCCGGACAGGCGTCGAACGAACTAACGACGCAGT
CAAGGACTGCGGCCTCGGGCACGTCCACGCCCGAGGCCGCGTCCATGCACGAGCACAAGTGTTCCTGTCGTTGTGTCTGCGTCTCGTTATTGCGATCACC
AACTACGAACGAGGAGATAATCCGGGAAGCACGATCATCACGGTGTGACAAGAGTTCTATGACACCCTC
TTCAATGCCGTGGAGACGGAGACGCTAGCGCTGTTCGAGCATCTCTCCTTCGAGTTTCTCGAAGAATTCGACGTGTTCGCCCCGGCGGAGACGGGGCGAA
CACGAGACCACGAACCACCCGAGATGATGCGTGGGTTTCTGCACTGCTACTACAAGGATATCTACGGCATTCGTCCGGTTGCGCGAGAACTGAACAACAC
AGTCGTCTGGCTCAGCTGTGGCTTCGATCGACCGCCGTCGAGAGACGCGGTCGATCGTTTCCTCACCGATCTCGAACACGTCATCGACGAGATTTTCGAC
CACCTCGTCGAGCAGGCCGCCTTGCGGGGCCTGCTCGACTTGACCTACTCGATTGATTCGACAGACGTGAGAACGATGCCAGCCGATCAAGACGCGTCGA
AATGCTACGATCCAACGGCTGAAGAGTACTACTACGGCTACGGCTGCACGATCGTTTCGACTGGTTCAAAGATCCCGATTGCAGCGGAATTCACCGAGAG
CAAACAAGCGCCAGAAGAGACGGCGATGCGCGTCACGCGTGACGCGCTCGCCGTCGACACTCCGATCTGGATGCTTGGAGACAGCGCCTATGACACACTC
GATTGGCACGACTACCTGCTGACCGCAGGAGTCGTGCCAATCGCCCCGTACAACGCACGCAACACCGACGATCCACTGGACATAGAGTACAGGGTCGAAG
ACCGTATCAAAGAACACAGCAAGGACGTGAAGTTGAAGCAATCGACGTTAGATGAGACGTACAACCGCCGGACAGGCGTCGAACGAACTAACGACGCAGT
CAAGGACTGCGGCCTCGGGCACGTCCACGCCCGAGGCCGCGTCCATGCACGAGCACAAGTGTTCCTGTCGTTGTGTCTGCGTCTCGTTATTGCGATCACC
AACTACGAACGAGGAGATAATCCGGGAAGCACGATCATCACGGTGTGACAAGAGTTCTATGACACCCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
993 bp | 330 aa | 56 | 1048 | + | No |
Chemistry : DDE
ORF sequence :
MSPATLQDNPTVETFFNAVETETLALFEHLSFEFLEEFDVFAPAETGRTRDHEPPEMMRGFLHCYYKDIYGIRPVARELNNTVVWLSCGFDRPPSRDAVD
RFLTDLEHVIDEIFDHLVEQAALRGLLDLTYSIDSTDVRTMPADQDASKCYDPTAEEYYYGYGCTIVSTGSKIPIAAEFTESKQAPEETAMRVTRDALAV
DTPIWMLGDSAYDTLDWHDYLLTAGVVPIAPYNARNTDDPLDIEYRVEDRIKEHSKDVKLKQSTLDETYNRRTGVERTNDAVKDCGLGHVHARGRVHARA
QVFLSLCLRLVIAITNYERGDNPGSTIITV
RFLTDLEHVIDEIFDHLVEQAALRGLLDLTYSIDSTDVRTMPADQDASKCYDPTAEEYYYGYGCTIVSTGSKIPIAAEFTESKQAPEETAMRVTRDALAV
DTPIWMLGDSAYDTLDWHDYLLTAGVVPIAPYNARNTDDPLDIEYRVEDRIKEHSKDVKLKQSTLDETYNRRTGVERTNDAVKDCGLGHVHARGRVHARA
QVFLSLCLRLVIAITNYERGDNPGSTIITV
Blast result :
Comments
ISNpe16 is 95% aa similar to ISH11.
References
1] Pfeiffer, F. (2013) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank