ISNpe16

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003372 ND Natrinema pellirubrum
Natrinema pellirubrum DSM 15624
DNA section
IS Length : 1069 bp

Ends


IR Length : 24/28

IRL : GAGGGTGTCATAGAACAGTTCTCATACCAGAGAGCAGGGTGAACGCTGAG
IRR : GAGGGTGTCATAGAACTCTTGTCACACCGTGATGATCGTGCTTCCCGGAT

Insertion site


Left flankDirect repeatRight flankDR Length
AACCAATGACGTTTTTGTCAACTCGC6
ATAAATAGACTACATAGGTAAGACGG6
TGTACTTACTATCACAGTCACTAACGGTT9
CATCTTTGTCGACGCCGTACACGGTATACGTA12

DNA sequence

GAGGGTGTCATAGAACAGTTCTCATACCAGAGAGCAGGGTGAACGCTGAGGTGGTATGAGCCCAGCGACCCTGCAAGATAATCCTACGGTAGAGACGTTC
TTCAATGCCGTGGAGACGGAGACGCTAGCGCTGTTCGAGCATCTCTCCTTCGAGTTTCTCGAAGAATTCGACGTGTTCGCCCCGGCGGAGACGGGGCGAA
CACGAGACCACGAACCACCCGAGATGATGCGTGGGTTTCTGCACTGCTACTACAAGGATATCTACGGCATTCGTCCGGTTGCGCGAGAACTGAACAACAC
AGTCGTCTGGCTCAGCTGTGGCTTCGATCGACCGCCGTCGAGAGACGCGGTCGATCGTTTCCTCACCGATCTCGAACACGTCATCGACGAGATTTTCGAC
CACCTCGTCGAGCAGGCCGCCTTGCGGGGCCTGCTCGACTTGACCTACTCGATTGATTCGACAGACGTGAGAACGATGCCAGCCGATCAAGACGCGTCGA
AATGCTACGATCCAACGGCTGAAGAGTACTACTACGGCTACGGCTGCACGATCGTTTCGACTGGTTCAAAGATCCCGATTGCAGCGGAATTCACCGAGAG
CAAACAAGCGCCAGAAGAGACGGCGATGCGCGTCACGCGTGACGCGCTCGCCGTCGACACTCCGATCTGGATGCTTGGAGACAGCGCCTATGACACACTC
GATTGGCACGACTACCTGCTGACCGCAGGAGTCGTGCCAATCGCCCCGTACAACGCACGCAACACCGACGATCCACTGGACATAGAGTACAGGGTCGAAG
ACCGTATCAAAGAACACAGCAAGGACGTGAAGTTGAAGCAATCGACGTTAGATGAGACGTACAACCGCCGGACAGGCGTCGAACGAACTAACGACGCAGT
CAAGGACTGCGGCCTCGGGCACGTCCACGCCCGAGGCCGCGTCCATGCACGAGCACAAGTGTTCCTGTCGTTGTGTCTGCGTCTCGTTATTGCGATCACC
AACTACGAACGAGGAGATAATCCGGGAAGCACGATCATCACGGTGTGACAAGAGTTCTATGACACCCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
993 bp330 aa561048+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSPATLQDNPTVETFFNAVETETLALFEHLSFEFLEEFDVFAPAETGRTRDHEPPEMMRGFLHCYYKDIYGIRPVARELNNTVVWLSCGFDRPPSRDAVD
RFLTDLEHVIDEIFDHLVEQAALRGLLDLTYSIDSTDVRTMPADQDASKCYDPTAEEYYYGYGCTIVSTGSKIPIAAEFTESKQAPEETAMRVTRDALAV
DTPIWMLGDSAYDTLDWHDYLLTAGVVPIAPYNARNTDDPLDIEYRVEDRIKEHSKDVKLKQSTLDETYNRRTGVERTNDAVKDCGLGHVHARGRVHARA
QVFLSLCLRLVIAITNYERGDNPGSTIITV

 

Blast result :
Comments
ISNpe16 is 95% aa similar to ISH11.
References
1] Pfeiffer, F. (2013) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank