ISHli13
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Halohasta litchfieldiae | Halohasta litchfieldiae |
DNA section
IS Length : 1586 bp
Ends
Left end : CAGATTCTAGGCGGTAAGCCCCCTTCCTCAAGGAGCAACGCAGGCCGGAGGCTGAGTAGCATAGTAGGGAGGGGATACACCGCCGTCATTGTCTCTCCTA II struct. : Yes
Right end : GGATACGCCTATATCTGCAAAGCGCGTCATCGAAGCAGGAAGCCCCATCCTCAAGGAGCGAACCGCGTCAGCGGTTAGCGAGTAGGGTGAGGTAGTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TTCTGCTTCGGA | TTAG | TGGACGGTCTGT | tcac |
DNA sequence
CAGATTCTAGGCGGTAAGCCCCCTTCCTCAAGGAGCAACGCAGGCCGGAGGCTGAGTAGCATAGTAGGGAGGGGATACACCGCCGTCATTGTCTCTCCTA
CACTATTCAATCACTATCCCACAGGCCCACGTACCGACACATTTTTGTTGAAACAATGTATAAATGCCAGTGATGGATAAACACGAAATCGAAGGCCATG
AAGTTATCCAGGGCAAAGGGCAAGGTAAAACCAACCGGCAACGGCGCACACGTCCTCGTCCCAAAACAGTGGCGTGGCGCAGATGTGAAAATCGTCCGAA
CGTCTGACCCCGACGAATAGCTACGATCAATGCACTACGCCTACAGGTTCCGGCTCAACCCCACAGCAAAACAGCGTGAGCTACTGGATTATCACCGTGA
CACCTGTAGGCAACTCTACAACCACGCACTCGGTGAATTTGAGCAAATCCCCGACTCGGCGGGGACGCTCAATCAGCGTGTCCGACAGGTTCGTGACCAA
CTCACCGATCTCAAAGAGTGGTGGGATGAACTGAACGACCTGTATTCGACGGTTGCACAAGCCGCTGTCATGCGAATCGAAGACAGCATCAAAGCACTCT
CTGAGTTGAAACAGAACAGCTACAACGTCGGCAGCCTCAACTGGAAAGCACCACAGGAGTTCCGCAGTTTCACCTACGTTCAGTCTGGTTTCGAGTTTGA
TAGTAAGAACGGCCAGCCTGTGCTTTCGCTATCGAAACTTGCGGATATTCCTATCGTGAAACACCGGGAGATACCCGACGACATGACGGTAAAAGAGGTC
ACGATCAAGAAGGAACCAACCGGTGAGTGGTTCGCTTCATTCGTCGTCGACGGCAAACAGACGCCGGAAAAACCAGCTGATCCCGAGCGGTGTGTCGGGA
TCGACGTTGGCATACTGAAATACGCCCACGATACGGATGGAACCGCTGTGGAGTCGCTTGATCTGTCGGATGAACGCGAGCGGTTGGAACGCGCCCAGCG
CGATCTCTCACGCAAAGAACACGGGTCGAACAATTGGGAGCGGCAGCGAAAGGTCGTCGCCCGGCGGCACGCAGACCTGAAACGGAAGCGACGAGATTTC
TTGCACAAGCTCTCGGCGTACTACGCCACCGAATACGACCTCGTAGCCGTTGAGGACCTAGACGCGAAGGGATTGGTCGAACTACCGGGCAACTCTCGGA
ACCGAGCGTCGGCGGCGTGGGGAACATTCAAGCGGATGCTTGAATACAAGTGTGAACGCGAAGGGGCGCATTTCGTGGCAGTTGATCCGAAGGACACGAC
CAAAGAGTGCGCCAGTTGTGGCGCGAAAACAGACAAACCACTATGGGTGCGGGAACACTCCTGCCCCTCATGCGGATTTGAAGCCGACAGAGACGCAAAC
GCGGCGATCAACATCCTTTCTCGCGGCCTGAAACAGCTAGGAGTGGGACACTCCGAATCAACGCCTGTGGAGACTGAGCTCCCTGTGGATACGCCTATAT
CTGCAAAGCGCGTCATCGAAGCAGGAAGCCCCATCCTCAAGGAGCGAACCGCGTCAGCGGTTAGCGAGTAGGGTGAGGTAGTTCAC
CACTATTCAATCACTATCCCACAGGCCCACGTACCGACACATTTTTGTTGAAACAATGTATAAATGCCAGTGATGGATAAACACGAAATCGAAGGCCATG
AAGTTATCCAGGGCAAAGGGCAAGGTAAAACCAACCGGCAACGGCGCACACGTCCTCGTCCCAAAACAGTGGCGTGGCGCAGATGTGAAAATCGTCCGAA
CGTCTGACCCCGACGAATAGCTACGATCAATGCACTACGCCTACAGGTTCCGGCTCAACCCCACAGCAAAACAGCGTGAGCTACTGGATTATCACCGTGA
CACCTGTAGGCAACTCTACAACCACGCACTCGGTGAATTTGAGCAAATCCCCGACTCGGCGGGGACGCTCAATCAGCGTGTCCGACAGGTTCGTGACCAA
CTCACCGATCTCAAAGAGTGGTGGGATGAACTGAACGACCTGTATTCGACGGTTGCACAAGCCGCTGTCATGCGAATCGAAGACAGCATCAAAGCACTCT
CTGAGTTGAAACAGAACAGCTACAACGTCGGCAGCCTCAACTGGAAAGCACCACAGGAGTTCCGCAGTTTCACCTACGTTCAGTCTGGTTTCGAGTTTGA
TAGTAAGAACGGCCAGCCTGTGCTTTCGCTATCGAAACTTGCGGATATTCCTATCGTGAAACACCGGGAGATACCCGACGACATGACGGTAAAAGAGGTC
ACGATCAAGAAGGAACCAACCGGTGAGTGGTTCGCTTCATTCGTCGTCGACGGCAAACAGACGCCGGAAAAACCAGCTGATCCCGAGCGGTGTGTCGGGA
TCGACGTTGGCATACTGAAATACGCCCACGATACGGATGGAACCGCTGTGGAGTCGCTTGATCTGTCGGATGAACGCGAGCGGTTGGAACGCGCCCAGCG
CGATCTCTCACGCAAAGAACACGGGTCGAACAATTGGGAGCGGCAGCGAAAGGTCGTCGCCCGGCGGCACGCAGACCTGAAACGGAAGCGACGAGATTTC
TTGCACAAGCTCTCGGCGTACTACGCCACCGAATACGACCTCGTAGCCGTTGAGGACCTAGACGCGAAGGGATTGGTCGAACTACCGGGCAACTCTCGGA
ACCGAGCGTCGGCGGCGTGGGGAACATTCAAGCGGATGCTTGAATACAAGTGTGAACGCGAAGGGGCGCATTTCGTGGCAGTTGATCCGAAGGACACGAC
CAAAGAGTGCGCCAGTTGTGGCGCGAAAACAGACAAACCACTATGGGTGCGGGAACACTCCTGCCCCTCATGCGGATTTGAAGCCGACAGAGACGCAAAC
GCGGCGATCAACATCCTTTCTCGCGGCCTGAAACAGCTAGGAGTGGGACACTCCGAATCAACGCCTGTGGAGACTGAGCTCCCTGTGGATACGCCTATAT
CTGCAAAGCGCGTCATCGAAGCAGGAAGCCCCATCCTCAAGGAGCGAACCGCGTCAGCGGTTAGCGAGTAGGGTGAGGTAGTTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1242 bp | 413 aa | 330 | 1571 | + | No |
AG : TnpB
ORF sequence :
MHYAYRFRLNPTAKQRELLDYHRDTCRQLYNHALGEFEQIPDSAGTLNQRVRQVRDQLTDLKEWWDELNDLYSTVAQAAVMRIEDSIKALSELKQNSYNV
GSLNWKAPQEFRSFTYVQSGFEFDSKNGQPVLSLSKLADIPIVKHREIPDDMTVKEVTIKKEPTGEWFASFVVDGKQTPEKPADPERCVGIDVGILKYAH
DTDGTAVESLDLSDERERLERAQRDLSRKEHGSNNWERQRKVVARRHADLKRKRRDFLHKLSAYYATEYDLVAVEDLDAKGLVELPGNSRNRASAAWGTF
KRMLEYKCEREGAHFVAVDPKDTTKECASCGAKTDKPLWVREHSCPSCGFEADRDANAAINILSRGLKQLGVGHSESTPVETELPVDTPISAKRVIEAGS
PILKERTASAVSE
GSLNWKAPQEFRSFTYVQSGFEFDSKNGQPVLSLSKLADIPIVKHREIPDDMTVKEVTIKKEPTGEWFASFVVDGKQTPEKPADPERCVGIDVGILKYAH
DTDGTAVESLDLSDERERLERAQRDLSRKEHGSNNWERQRKVVARRHADLKRKRRDFLHKLSAYYATEYDLVAVEDLDAKGLVELPGNSRNRASAAWGTF
KRMLEYKCEREGAHFVAVDPKDTTKECASCGAKTDKPLWVREHSCPSCGFEADRDANAAINILSRGLKQLGVGHSESTPVETELPVDTPISAKRVIEAGS
PILKERTASAVSE
Blast result :
Comments
ISHli13 is 81% (ORFB) aa similar to ISHma12.
References
1] Pfeiffer, F. (2013) Direct submission.
2] M. Dyall-Smith et al, in preparation.
2] M. Dyall-Smith et al, in preparation.