ISHli13

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Halohasta litchfieldiae
Halohasta litchfieldiae
DNA section
IS Length : 1586 bp

Ends


Left end : CAGATTCTAGGCGGTAAGCCCCCTTCCTCAAGGAGCAACGCAGGCCGGAGGCTGAGTAGCATAGTAGGGAGGGGATACACCGCCGTCATTGTCTCTCCTA II struct. : Yes
Right end : GGATACGCCTATATCTGCAAAGCGCGTCATCGAAGCAGGAAGCCCCATCCTCAAGGAGCGAACCGCGTCAGCGGTTAGCGAGTAGGGTGAGGTAGTTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
TTCTGCTTCGGATTAGTGGACGGTCTGTtcac

DNA sequence

CAGATTCTAGGCGGTAAGCCCCCTTCCTCAAGGAGCAACGCAGGCCGGAGGCTGAGTAGCATAGTAGGGAGGGGATACACCGCCGTCATTGTCTCTCCTA
CACTATTCAATCACTATCCCACAGGCCCACGTACCGACACATTTTTGTTGAAACAATGTATAAATGCCAGTGATGGATAAACACGAAATCGAAGGCCATG
AAGTTATCCAGGGCAAAGGGCAAGGTAAAACCAACCGGCAACGGCGCACACGTCCTCGTCCCAAAACAGTGGCGTGGCGCAGATGTGAAAATCGTCCGAA
CGTCTGACCCCGACGAATAGCTACGATCAATGCACTACGCCTACAGGTTCCGGCTCAACCCCACAGCAAAACAGCGTGAGCTACTGGATTATCACCGTGA
CACCTGTAGGCAACTCTACAACCACGCACTCGGTGAATTTGAGCAAATCCCCGACTCGGCGGGGACGCTCAATCAGCGTGTCCGACAGGTTCGTGACCAA
CTCACCGATCTCAAAGAGTGGTGGGATGAACTGAACGACCTGTATTCGACGGTTGCACAAGCCGCTGTCATGCGAATCGAAGACAGCATCAAAGCACTCT
CTGAGTTGAAACAGAACAGCTACAACGTCGGCAGCCTCAACTGGAAAGCACCACAGGAGTTCCGCAGTTTCACCTACGTTCAGTCTGGTTTCGAGTTTGA
TAGTAAGAACGGCCAGCCTGTGCTTTCGCTATCGAAACTTGCGGATATTCCTATCGTGAAACACCGGGAGATACCCGACGACATGACGGTAAAAGAGGTC
ACGATCAAGAAGGAACCAACCGGTGAGTGGTTCGCTTCATTCGTCGTCGACGGCAAACAGACGCCGGAAAAACCAGCTGATCCCGAGCGGTGTGTCGGGA
TCGACGTTGGCATACTGAAATACGCCCACGATACGGATGGAACCGCTGTGGAGTCGCTTGATCTGTCGGATGAACGCGAGCGGTTGGAACGCGCCCAGCG
CGATCTCTCACGCAAAGAACACGGGTCGAACAATTGGGAGCGGCAGCGAAAGGTCGTCGCCCGGCGGCACGCAGACCTGAAACGGAAGCGACGAGATTTC
TTGCACAAGCTCTCGGCGTACTACGCCACCGAATACGACCTCGTAGCCGTTGAGGACCTAGACGCGAAGGGATTGGTCGAACTACCGGGCAACTCTCGGA
ACCGAGCGTCGGCGGCGTGGGGAACATTCAAGCGGATGCTTGAATACAAGTGTGAACGCGAAGGGGCGCATTTCGTGGCAGTTGATCCGAAGGACACGAC
CAAAGAGTGCGCCAGTTGTGGCGCGAAAACAGACAAACCACTATGGGTGCGGGAACACTCCTGCCCCTCATGCGGATTTGAAGCCGACAGAGACGCAAAC
GCGGCGATCAACATCCTTTCTCGCGGCCTGAAACAGCTAGGAGTGGGACACTCCGAATCAACGCCTGTGGAGACTGAGCTCCCTGTGGATACGCCTATAT
CTGCAAAGCGCGTCATCGAAGCAGGAAGCCCCATCCTCAAGGAGCGAACCGCGTCAGCGGTTAGCGAGTAGGGTGAGGTAGTTCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1242 bp413 aa3301571+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MHYAYRFRLNPTAKQRELLDYHRDTCRQLYNHALGEFEQIPDSAGTLNQRVRQVRDQLTDLKEWWDELNDLYSTVAQAAVMRIEDSIKALSELKQNSYNV
GSLNWKAPQEFRSFTYVQSGFEFDSKNGQPVLSLSKLADIPIVKHREIPDDMTVKEVTIKKEPTGEWFASFVVDGKQTPEKPADPERCVGIDVGILKYAH
DTDGTAVESLDLSDERERLERAQRDLSRKEHGSNNWERQRKVVARRHADLKRKRRDFLHKLSAYYATEYDLVAVEDLDAKGLVELPGNSRNRASAAWGTF
KRMLEYKCEREGAHFVAVDPKDTTKECASCGAKTDKPLWVREHSCPSCGFEADRDANAAINILSRGLKQLGVGHSESTPVETELPVDTPISAKRVIEAGS
PILKERTASAVSE

 

Blast result :
Comments
ISHli13 is 81% (ORFB) aa similar to ISHma12.
References
1] Pfeiffer, F. (2013) Direct submission.
2] M. Dyall-Smith et al, in preparation.