ISHli3

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Halohasta litchfieldiae
Halohasta litchfieldiae
DNA section
IS Length : 1522 bp

Ends


Left end : TTATAGATATTCAAGAAGAATACCTGCGGCTTTAGCCGCAGGATGAATCCGACAATCCTCTACACCAACTACCTCCCGATTGCCCGGCTAGATATTCCAC II struct. : No
Right end : TTGTCCCACGGATTCTCACCGAGGGATCAAGTGGTAGACTGCAAACCCTAATATCTCAACGCTCGGGATTCCCGCGTCTTCAAGTGCGGGAGGATGCCAA II struct. : No

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
TGTCGGAACTCATTATGTGTACAATGTG

DNA sequence

TTATAGATATTCAAGAAGAATACCTGCGGCTTTAGCCGCAGGATGAATCCGACAATCCTCTACACCAACTACCTCCCGATTGCCCGGCTAGATATTCCAC
GTTCTAATCCAAACTTTTGCTACAGAACGCTACATAACTGGTTATGGAGTCGTTTCACGAATGCACATCCATCGAACATATCGGGCGAAAATCCGTAACT
ACTCACAAGTGGAGCGGATGCTCGACCTGCATGGATGGAGTGCATCGAAACTGTGGAACGTTGCAAACTATCACTCCCGAGAAGTGTGGGAGGACACGGG
CGAGATCCCCGACGATTCGGACTTGAAACGTGAGTTGAAAGGTCATGACAACTACAAGGGACTGCACAGTCAGTCCAGTCAGCGCGTTCTGGAAGAACTT
GCTGAAGCCTTCAACTCGTGGTACGGAAAACGCAAGAACGATTCTCGTGCCAATCCGCCCGGCTACCGCAAACGAAACTACTACGACAACGACGGCAACC
GCGTCCACGAAGAACACCCTCGAAGCACGGTGACGTGGAAGCAGAAAGGCATCCGTCACGACACCAAACACAACCGTGTCCGCCTCTCGAAAGGCGCGAA
TCACAAAGACCATCCGCGAGACTGGGACTACATCCTCGTTAAATACGAGGCTCGTCCCGAGGTCACGGTTGAAAATGTTCAACAAGTCAGAGCTGTTTAC
AATAAGTCGAAGGGGCAATGGGAACTCCACCTCGTGTGTAAGCACGAAATTGAGACTCCAGACGCTCCCGGTGACGAGACAGCAGGCGTTGACCTCGGTA
TTTGTAACTTCGCAGCGGTCGCATACAGCACCGAGGAAGCCGACTTGTACCCCGGAAACCGATTGAAACAGGACGGGTACTACTTCCCGAAGGAGATCGC
TAAGTGCGACGACTCAGGAGGTTCTGAGGCCACTCGATTACATCACAAATGGTCGGAACGTCGAACACACTTTTTCCACTCATTAGCGAAGCACATCGTT
GAGAAGTGTATCGAACGTGAAGTGGGTCGTATCAACGTCGGGGAACTCGCGGGTGTTCGAGAGAATGAGAACGGTAAGTCGAAGAACTGGGGTCGTCACG
GCAACCTTGACTTGCACGGCTGGGCGTTCGACCGCTTCACATCGATTCTCACGTACAAAGCGAAGGTTGAGGGTATCGAAGTGGTAGAAGTCTCAGAGCG
CGACACGAGCAAGACGTGTTGTGTGTGCGGTAGAGAAGACGACAGTCAGCGTGTGGAACGCGGGTTGTACGTGTGTGAGTCGTGTGATGCGGCGTTCAAC
GCTGATGTGAACGGGGCGGAAAACATCCGTCTCGACTTGAATCAAAGTAACTCCGAGTCTCCACCTGGTTTTGGTGGAAATAGGTGTACCGGCTGGTTGG
CACAGCCCGGAGTCTATCTTCATGACTTGTCCCACGGATTCTCACCGAGGGATCAAGTGGTAGACTGCAAACCCTAATATCTCAACGCTCGGGATTCCCG
CGTCTTCAAGTGCGGGAGGATGCCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1317 bp438 aa1571473+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MHIHRTYRAKIRNYSQVERMLDLHGWSASKLWNVANYHSREVWEDTGEIPDDSDLKRELKGHDNYKGLHSQSSQRVLEELAEAFNSWYGKRKNDSRANPP
GYRKRNYYDNDGNRVHEEHPRSTVTWKQKGIRHDTKHNRVRLSKGANHKDHPRDWDYILVKYEARPEVTVENVQQVRAVYNKSKGQWELHLVCKHEIETP
DAPGDETAGVDLGICNFAAVAYSTEEADLYPGNRLKQDGYYFPKEIAKCDDSGGSEATRLHHKWSERRTHFFHSLAKHIVEKCIEREVGRINVGELAGVR
ENENGKSKNWGRHGNLDLHGWAFDRFTSILTYKAKVEGIEVVEVSERDTSKTCCVCGREDDSQRVERGLYVCESCDAAFNADVNGAENIRLDLNQSNSES
PPGFGGNRCTGWLAQPGVYLHDLSHGFSPRDQVVDCKP

 

Blast result :
Comments
ISHli3 is 62% aa similar to ISNph18.
References
1] Pfeiffer, F. (2013) Direct submission.
2] M. Dyall-Smith et al, in preparation.