ISHli3
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Halohasta litchfieldiae | Halohasta litchfieldiae |
DNA section
IS Length : 1522 bp
Ends
Left end : TTATAGATATTCAAGAAGAATACCTGCGGCTTTAGCCGCAGGATGAATCCGACAATCCTCTACACCAACTACCTCCCGATTGCCCGGCTAGATATTCCAC II struct. : No
Right end : TTGTCCCACGGATTCTCACCGAGGGATCAAGTGGTAGACTGCAAACCCTAATATCTCAACGCTCGGGATTCCCGCGTCTTCAAGTGCGGGAGGATGCCAA II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TGTCGGAACTCA | TTAT | GTGTACAATGTG |
DNA sequence
TTATAGATATTCAAGAAGAATACCTGCGGCTTTAGCCGCAGGATGAATCCGACAATCCTCTACACCAACTACCTCCCGATTGCCCGGCTAGATATTCCAC
GTTCTAATCCAAACTTTTGCTACAGAACGCTACATAACTGGTTATGGAGTCGTTTCACGAATGCACATCCATCGAACATATCGGGCGAAAATCCGTAACT
ACTCACAAGTGGAGCGGATGCTCGACCTGCATGGATGGAGTGCATCGAAACTGTGGAACGTTGCAAACTATCACTCCCGAGAAGTGTGGGAGGACACGGG
CGAGATCCCCGACGATTCGGACTTGAAACGTGAGTTGAAAGGTCATGACAACTACAAGGGACTGCACAGTCAGTCCAGTCAGCGCGTTCTGGAAGAACTT
GCTGAAGCCTTCAACTCGTGGTACGGAAAACGCAAGAACGATTCTCGTGCCAATCCGCCCGGCTACCGCAAACGAAACTACTACGACAACGACGGCAACC
GCGTCCACGAAGAACACCCTCGAAGCACGGTGACGTGGAAGCAGAAAGGCATCCGTCACGACACCAAACACAACCGTGTCCGCCTCTCGAAAGGCGCGAA
TCACAAAGACCATCCGCGAGACTGGGACTACATCCTCGTTAAATACGAGGCTCGTCCCGAGGTCACGGTTGAAAATGTTCAACAAGTCAGAGCTGTTTAC
AATAAGTCGAAGGGGCAATGGGAACTCCACCTCGTGTGTAAGCACGAAATTGAGACTCCAGACGCTCCCGGTGACGAGACAGCAGGCGTTGACCTCGGTA
TTTGTAACTTCGCAGCGGTCGCATACAGCACCGAGGAAGCCGACTTGTACCCCGGAAACCGATTGAAACAGGACGGGTACTACTTCCCGAAGGAGATCGC
TAAGTGCGACGACTCAGGAGGTTCTGAGGCCACTCGATTACATCACAAATGGTCGGAACGTCGAACACACTTTTTCCACTCATTAGCGAAGCACATCGTT
GAGAAGTGTATCGAACGTGAAGTGGGTCGTATCAACGTCGGGGAACTCGCGGGTGTTCGAGAGAATGAGAACGGTAAGTCGAAGAACTGGGGTCGTCACG
GCAACCTTGACTTGCACGGCTGGGCGTTCGACCGCTTCACATCGATTCTCACGTACAAAGCGAAGGTTGAGGGTATCGAAGTGGTAGAAGTCTCAGAGCG
CGACACGAGCAAGACGTGTTGTGTGTGCGGTAGAGAAGACGACAGTCAGCGTGTGGAACGCGGGTTGTACGTGTGTGAGTCGTGTGATGCGGCGTTCAAC
GCTGATGTGAACGGGGCGGAAAACATCCGTCTCGACTTGAATCAAAGTAACTCCGAGTCTCCACCTGGTTTTGGTGGAAATAGGTGTACCGGCTGGTTGG
CACAGCCCGGAGTCTATCTTCATGACTTGTCCCACGGATTCTCACCGAGGGATCAAGTGGTAGACTGCAAACCCTAATATCTCAACGCTCGGGATTCCCG
CGTCTTCAAGTGCGGGAGGATGCCAA
GTTCTAATCCAAACTTTTGCTACAGAACGCTACATAACTGGTTATGGAGTCGTTTCACGAATGCACATCCATCGAACATATCGGGCGAAAATCCGTAACT
ACTCACAAGTGGAGCGGATGCTCGACCTGCATGGATGGAGTGCATCGAAACTGTGGAACGTTGCAAACTATCACTCCCGAGAAGTGTGGGAGGACACGGG
CGAGATCCCCGACGATTCGGACTTGAAACGTGAGTTGAAAGGTCATGACAACTACAAGGGACTGCACAGTCAGTCCAGTCAGCGCGTTCTGGAAGAACTT
GCTGAAGCCTTCAACTCGTGGTACGGAAAACGCAAGAACGATTCTCGTGCCAATCCGCCCGGCTACCGCAAACGAAACTACTACGACAACGACGGCAACC
GCGTCCACGAAGAACACCCTCGAAGCACGGTGACGTGGAAGCAGAAAGGCATCCGTCACGACACCAAACACAACCGTGTCCGCCTCTCGAAAGGCGCGAA
TCACAAAGACCATCCGCGAGACTGGGACTACATCCTCGTTAAATACGAGGCTCGTCCCGAGGTCACGGTTGAAAATGTTCAACAAGTCAGAGCTGTTTAC
AATAAGTCGAAGGGGCAATGGGAACTCCACCTCGTGTGTAAGCACGAAATTGAGACTCCAGACGCTCCCGGTGACGAGACAGCAGGCGTTGACCTCGGTA
TTTGTAACTTCGCAGCGGTCGCATACAGCACCGAGGAAGCCGACTTGTACCCCGGAAACCGATTGAAACAGGACGGGTACTACTTCCCGAAGGAGATCGC
TAAGTGCGACGACTCAGGAGGTTCTGAGGCCACTCGATTACATCACAAATGGTCGGAACGTCGAACACACTTTTTCCACTCATTAGCGAAGCACATCGTT
GAGAAGTGTATCGAACGTGAAGTGGGTCGTATCAACGTCGGGGAACTCGCGGGTGTTCGAGAGAATGAGAACGGTAAGTCGAAGAACTGGGGTCGTCACG
GCAACCTTGACTTGCACGGCTGGGCGTTCGACCGCTTCACATCGATTCTCACGTACAAAGCGAAGGTTGAGGGTATCGAAGTGGTAGAAGTCTCAGAGCG
CGACACGAGCAAGACGTGTTGTGTGTGCGGTAGAGAAGACGACAGTCAGCGTGTGGAACGCGGGTTGTACGTGTGTGAGTCGTGTGATGCGGCGTTCAAC
GCTGATGTGAACGGGGCGGAAAACATCCGTCTCGACTTGAATCAAAGTAACTCCGAGTCTCCACCTGGTTTTGGTGGAAATAGGTGTACCGGCTGGTTGG
CACAGCCCGGAGTCTATCTTCATGACTTGTCCCACGGATTCTCACCGAGGGATCAAGTGGTAGACTGCAAACCCTAATATCTCAACGCTCGGGATTCCCG
CGTCTTCAAGTGCGGGAGGATGCCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1317 bp | 438 aa | 157 | 1473 | + | No |
AG : TnpB
ORF sequence :
MHIHRTYRAKIRNYSQVERMLDLHGWSASKLWNVANYHSREVWEDTGEIPDDSDLKRELKGHDNYKGLHSQSSQRVLEELAEAFNSWYGKRKNDSRANPP
GYRKRNYYDNDGNRVHEEHPRSTVTWKQKGIRHDTKHNRVRLSKGANHKDHPRDWDYILVKYEARPEVTVENVQQVRAVYNKSKGQWELHLVCKHEIETP
DAPGDETAGVDLGICNFAAVAYSTEEADLYPGNRLKQDGYYFPKEIAKCDDSGGSEATRLHHKWSERRTHFFHSLAKHIVEKCIEREVGRINVGELAGVR
ENENGKSKNWGRHGNLDLHGWAFDRFTSILTYKAKVEGIEVVEVSERDTSKTCCVCGREDDSQRVERGLYVCESCDAAFNADVNGAENIRLDLNQSNSES
PPGFGGNRCTGWLAQPGVYLHDLSHGFSPRDQVVDCKP
GYRKRNYYDNDGNRVHEEHPRSTVTWKQKGIRHDTKHNRVRLSKGANHKDHPRDWDYILVKYEARPEVTVENVQQVRAVYNKSKGQWELHLVCKHEIETP
DAPGDETAGVDLGICNFAAVAYSTEEADLYPGNRLKQDGYYFPKEIAKCDDSGGSEATRLHHKWSERRTHFFHSLAKHIVEKCIEREVGRINVGELAGVR
ENENGKSKNWGRHGNLDLHGWAFDRFTSILTYKAKVEGIEVVEVSERDTSKTCCVCGREDDSQRVERGLYVCESCDAAFNADVNGAENIRLDLNQSNSES
PPGFGGNRCTGWLAQPGVYLHDLSHGFSPRDQVVDCKP
Blast result :
Comments
ISHli3 is 62% aa similar to ISNph18.
References
1] Pfeiffer, F. (2013) Direct submission.
2] M. Dyall-Smith et al, in preparation.
2] M. Dyall-Smith et al, in preparation.