ISHli10
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Halohasta litchfieldiae | Halohasta litchfieldiae |
DNA section
IS Length : 1059 bp
Ends
IR Length : 16/18
IRL : TAGTAACCGTTAGAATTATCAGCCCGTTGTATGTAGTAGGCAGTAATGGC
IRR : TAGTAACCGTTAGATATAATTACTCACTTCAGGTAGGCTTAGTTGATGGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTCCCTTCTCAC | TA | GCTGCATCGACA | 2 |
DNA sequence
TAGTAACCGTTAGAATTATCAGCCCGTTGTATGTAGTAGGCAGTAATGGCACACCTCGAAGAGACCGGGCTCGACGAACTCCATAAAGCACTCGAAGAAG
TCGAGGGGAAACGACCGGCACAACGGCTATTAACGGCAATTGCGTACAAAAACGGGATTAGCCAAACCGAGCTTGCAGAATGGAACGACACGGGCCGGCG
AACGATCTACAGTTGGCTCAAACGACTCAATACAGATGAACCGCTTTCGGAAGCAGTTACAGATGATCATCGTTCTGGTAGAAATCGAAAATTATCGGAT
AAACATCTCGAAAAATTTCGTGAAACCGTCCGAGATCCTCCGGCTGAAGCTGGATACGATGAACCAGCTTGGACAACATCACTTGCCCGGCACCATCTCA
AGGAAACCTACGACGTCGAGTACTCGATTCCGAGCTGTCGGCGCCTCCTCAAGGAAGCGGGTCTTAGCTATCAGAAACCGCGGCCGTCGAACGCCAAAGC
CGAGCCGGAAGACCGCGAGGAGTTCGACGAAACCCTCAAAAAAACCGCCGGGAGCTGGACGCTACAGTCGTCTGTATCGATCAGAAGAAGACATCGGTGA
ATGGCGATTCAACGCAGGCCTGGTTTCGACGAAATTCACGGCCTAGCGTCGAACTATCAGGCCTTCGAGACTGGACGTGTTTACTTGGTGCTGTCACTGA
CGATGGCCGGTCGTTTTTCTCACGATTTCCTGAATATGTGACCGCCGAACACGCCAAACATTTCATTTTAGCAGTATATGATGAATTCGAAGAGGATTTG
ATCGTTGTACTGGATGGAGCGTCGTACTTTCGGGCGTCGGCCGTCACCGAACTTGCGGAGCGTGATGGACTCGAATTCGTTCGATTGCCGGCGTATCGTC
CTGACCTTAATCCGGTCGAAGAGTGCTGGAGACAGCTCGAATCGGCGTTGGGCAATCGCTACTTCGAGTCAATGAATGAACTCACGACCACCATCGATGC
CGCCCTCCATCAACTAAGCCTACCTGAAGTGAGTAATTATATCTAACGGTTACTA
TCGAGGGGAAACGACCGGCACAACGGCTATTAACGGCAATTGCGTACAAAAACGGGATTAGCCAAACCGAGCTTGCAGAATGGAACGACACGGGCCGGCG
AACGATCTACAGTTGGCTCAAACGACTCAATACAGATGAACCGCTTTCGGAAGCAGTTACAGATGATCATCGTTCTGGTAGAAATCGAAAATTATCGGAT
AAACATCTCGAAAAATTTCGTGAAACCGTCCGAGATCCTCCGGCTGAAGCTGGATACGATGAACCAGCTTGGACAACATCACTTGCCCGGCACCATCTCA
AGGAAACCTACGACGTCGAGTACTCGATTCCGAGCTGTCGGCGCCTCCTCAAGGAAGCGGGTCTTAGCTATCAGAAACCGCGGCCGTCGAACGCCAAAGC
CGAGCCGGAAGACCGCGAGGAGTTCGACGAAACCCTCAAAAAAACCGCCGGGAGCTGGACGCTACAGTCGTCTGTATCGATCAGAAGAAGACATCGGTGA
ATGGCGATTCAACGCAGGCCTGGTTTCGACGAAATTCACGGCCTAGCGTCGAACTATCAGGCCTTCGAGACTGGACGTGTTTACTTGGTGCTGTCACTGA
CGATGGCCGGTCGTTTTTCTCACGATTTCCTGAATATGTGACCGCCGAACACGCCAAACATTTCATTTTAGCAGTATATGATGAATTCGAAGAGGATTTG
ATCGTTGTACTGGATGGAGCGTCGTACTTTCGGGCGTCGGCCGTCACCGAACTTGCGGAGCGTGATGGACTCGAATTCGTTCGATTGCCGGCGTATCGTC
CTGACCTTAATCCGGTCGAAGAGTGCTGGAGACAGCTCGAATCGGCGTTGGGCAATCGCTACTTCGAGTCAATGAATGAACTCACGACCACCATCGATGC
CGCCCTCCATCAACTAAGCCTACCTGAAGTGAGTAATTATATCTAACGGTTACTA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
555 bp | 184 aa | 46 | 600 | + | No |
Description : First part of the transposase
ORF sequence :
MAHLEETGLDELHKALEEVEGKRPAQRLLTAIAYKNGISQTELAEWNDTGRRTIYSWLKRLNTDEPLSEAVTDDHRSGRNRKLSDKHLEKFRETVRDPPA
EAGYDEPAWTTSLARHHLKETYDVEYSIPSCRRLLKEAGLSYQKPRPSNAKAEPEDREEFDETLKKTAGSWTLQSSVSIRRRHR
EAGYDEPAWTTSLARHHLKETYDVEYSIPSCRRLLKEAGLSYQKPRPSNAKAEPEDREEFDETLKKTAGSWTLQSSVSIRRRHR
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
579 bp | 192 aa | 468 | 1046 | + | No |
Description : Second part of the transposase
ORF sequence :
LSETAAVERQSRAGRPRGVRRNPQKNRRELDATVVCIDQKKTSVNGDSTQAWFRRNSRPSVELSGLRDWTCLLGAVTDDGRSFFSRFPEYVTAEHAKHFI
LAVYDEFEEDLIVVLDGASYFRASAVTELAERDGLEFVRLPAYRPDLNPVEECWRQLESALGNRYFESMNELTTTIDAALHQLSLPEVSNYI
LAVYDEFEEDLIVVLDGASYFRASAVTELAERDGLEFVRLPAYRPDLNPVEECWRQLESALGNRYFESMNELTTTIDAALHQLSLPEVSNYI
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1001 bp | 333 aa | 46 | 1046 | + | Yes |
Chemistry : DDE
ORF sequence :
MAHLEETGLDELHKALEEVEGKRPAQRLLTAIAYKNGISQTELAEWNDTGRRTIYSWLKRLNTDEPLSEAVTDDHRSGRNRKLSDKHLEKFRETVRDPPA
EAGYDEPAWTTSLARHHLKETYDVEYSIPSCRRLLKEAGLSYQKPRPSNAKAEPEDREEFDETLKKNRRELDATVVCIDQKKTSVNGDSTQAWFRRNSRP
SVELSGLRDWTCLLGAVTDDGRSFFSRFPEYVTAEHAKHFILAVYDEFEEDLIVVLDGASYFRASAVTELAERDGLEFVRLPAYRPDLNPVEECWRQLES
ALGNRYFESMNELTTTIDAALHQLSLPEVSNYI
EAGYDEPAWTTSLARHHLKETYDVEYSIPSCRRLLKEAGLSYQKPRPSNAKAEPEDREEFDETLKKNRRELDATVVCIDQKKTSVNGDSTQAWFRRNSRP
SVELSGLRDWTCLLGAVTDDGRSFFSRFPEYVTAEHAKHFILAVYDEFEEDLIVVLDGASYFRASAVTELAERDGLEFVRLPAYRPDLNPVEECWRQLES
ALGNRYFESMNELTTTIDAALHQLSLPEVSNYI
Blast result :
Comments
ISHli10 is 82% aa similar to ISNamo16.
References
1] Pfeiffer, F. (2013) Direct submission.
2] M. Dyall-Smith et al, in preparation.
2] M. Dyall-Smith et al, in preparation.