ISHli10

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Halohasta litchfieldiae
Halohasta litchfieldiae
DNA section
IS Length : 1059 bp

Ends


IR Length : 16/18

IRL : TAGTAACCGTTAGAATTATCAGCCCGTTGTATGTAGTAGGCAGTAATGGC
IRR : TAGTAACCGTTAGATATAATTACTCACTTCAGGTAGGCTTAGTTGATGGA

Insertion site


Left flankDirect repeatRight flankDR Length
TTCCCTTCTCACTAGCTGCATCGACA2

DNA sequence

TAGTAACCGTTAGAATTATCAGCCCGTTGTATGTAGTAGGCAGTAATGGCACACCTCGAAGAGACCGGGCTCGACGAACTCCATAAAGCACTCGAAGAAG
TCGAGGGGAAACGACCGGCACAACGGCTATTAACGGCAATTGCGTACAAAAACGGGATTAGCCAAACCGAGCTTGCAGAATGGAACGACACGGGCCGGCG
AACGATCTACAGTTGGCTCAAACGACTCAATACAGATGAACCGCTTTCGGAAGCAGTTACAGATGATCATCGTTCTGGTAGAAATCGAAAATTATCGGAT
AAACATCTCGAAAAATTTCGTGAAACCGTCCGAGATCCTCCGGCTGAAGCTGGATACGATGAACCAGCTTGGACAACATCACTTGCCCGGCACCATCTCA
AGGAAACCTACGACGTCGAGTACTCGATTCCGAGCTGTCGGCGCCTCCTCAAGGAAGCGGGTCTTAGCTATCAGAAACCGCGGCCGTCGAACGCCAAAGC
CGAGCCGGAAGACCGCGAGGAGTTCGACGAAACCCTCAAAAAAACCGCCGGGAGCTGGACGCTACAGTCGTCTGTATCGATCAGAAGAAGACATCGGTGA
ATGGCGATTCAACGCAGGCCTGGTTTCGACGAAATTCACGGCCTAGCGTCGAACTATCAGGCCTTCGAGACTGGACGTGTTTACTTGGTGCTGTCACTGA
CGATGGCCGGTCGTTTTTCTCACGATTTCCTGAATATGTGACCGCCGAACACGCCAAACATTTCATTTTAGCAGTATATGATGAATTCGAAGAGGATTTG
ATCGTTGTACTGGATGGAGCGTCGTACTTTCGGGCGTCGGCCGTCACCGAACTTGCGGAGCGTGATGGACTCGAATTCGTTCGATTGCCGGCGTATCGTC
CTGACCTTAATCCGGTCGAAGAGTGCTGGAGACAGCTCGAATCGGCGTTGGGCAATCGCTACTTCGAGTCAATGAATGAACTCACGACCACCATCGATGC
CGCCCTCCATCAACTAAGCCTACCTGAAGTGAGTAATTATATCTAACGGTTACTA
Recoding section
  • Recoding by frameshift
  • Frame
  • Type
  • Experimentally demonstrated

Stimulators :

  • Shine-Dalgarno sequence :
  • Secondary structure :

Recoding motif :

Protein section
ORF number : 3

 

ORF 1
LengthBeginEndStrandFusion ORF
555 bp184 aa46600+No
ORF function : Transposase
Description : First part of the transposase

ORF sequence :

MAHLEETGLDELHKALEEVEGKRPAQRLLTAIAYKNGISQTELAEWNDTGRRTIYSWLKRLNTDEPLSEAVTDDHRSGRNRKLSDKHLEKFRETVRDPPA
EAGYDEPAWTTSLARHHLKETYDVEYSIPSCRRLLKEAGLSYQKPRPSNAKAEPEDREEFDETLKKTAGSWTLQSSVSIRRRHR

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
579 bp192 aa4681046+No
ORF function : Transposase
Description : Second part of the transposase

ORF sequence :

LSETAAVERQSRAGRPRGVRRNPQKNRRELDATVVCIDQKKTSVNGDSTQAWFRRNSRPSVELSGLRDWTCLLGAVTDDGRSFFSRFPEYVTAEHAKHFI
LAVYDEFEEDLIVVLDGASYFRASAVTELAERDGLEFVRLPAYRPDLNPVEECWRQLESALGNRYFESMNELTTTIDAALHQLSLPEVSNYI

 

Blast result :
ORF 3
LengthBeginEndStrandFusion ORF
1001 bp333 aa461046+Yes
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAHLEETGLDELHKALEEVEGKRPAQRLLTAIAYKNGISQTELAEWNDTGRRTIYSWLKRLNTDEPLSEAVTDDHRSGRNRKLSDKHLEKFRETVRDPPA
EAGYDEPAWTTSLARHHLKETYDVEYSIPSCRRLLKEAGLSYQKPRPSNAKAEPEDREEFDETLKKNRRELDATVVCIDQKKTSVNGDSTQAWFRRNSRP
SVELSGLRDWTCLLGAVTDDGRSFFSRFPEYVTAEHAKHFILAVYDEFEEDLIVVLDGASYFRASAVTELAERDGLEFVRLPAYRPDLNPVEECWRQLES
ALGNRYFESMNELTTTIDAALHQLSLPEVSNYI

 

Blast result :
Comments
ISHli10 is 82% aa similar to ISNamo16.
References
1] Pfeiffer, F. (2013) Direct submission.
2] M. Dyall-Smith et al, in preparation.