ISHli9
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Halohasta litchfieldiae | Halohasta litchfieldiae |
DNA section
IS Length : 742 bp
Ends
IR Length : 18/22
IRL : GGCACTGTCTAGTTAAGCTAGTTTGAGAAGTGAGCAGGTCGTTGCGATAA
IRR : GGCACTGTCTAGATAACCTCCTCAACTGGTGTTCGTCCATCAAGAGCTTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGAGGAAAGAGA | CCTGAGCA | AATTGTATACTC | 8 |
DNA sequence
GGCACTGTCTAGTTAAGCTAGTTTGAGAAGTGAGCAGGTCGTTGCGATAATTGGTCAAAATGCTCGCAGACCTGCTCAGCGAGTCGTTAGCGGTGGATTA
TCAAGAATGTTGGGAGCGTGAGCGGACGGCGACACCCGTTAGGGTGTTCGCCGTCCAGCTCCACGCGACCGGCTGTTCACTTAGAGAAACAAAAGAGATT
CTTCGATTGTTAGGCGTTCAACGCTCTCATCAAGCAATTTGGCAGTGGGTACATCAGATAGCTGACAGCGGTCACAATCCGCCTGAGGCGCAGCCGAAGC
GGGTTGCCGTAGACGAGACCGCTGTCAAAATCAATGGAGAGTGGTCTTGGCTGTATGCTGCAATAGACATCGAGACAAAATTGATTCTTGATGTCGAGTT
GTTCGGACGACATGGTACCGATCCGGCTGCGGCGTTCCTCCATCGACTGACCGAGAAACACGACCTCTCCGAGGCCGTTTTTCTCGTCGATGGCTACGGG
TACCAGACAGCCCTCGCTCGATTAGGCTTAAGCGGTCGGCTTGACTACGTCAAGCGAAACCTCATCGAAAAATGGTTTCACACGCTCAAAATGAGGATCG
ACCGCTTCCATAATTCATGGGTGGGCAGTCATGGATGCGTCCGTGAGTGGTTAATGCAGTTTGCACAATACTACAACTTTCAGCGACCGCATCAAGCTCT
TGATGGACGAACACCAGTTGAGGAGGTTATCTAGACAGTGCC
TCAAGAATGTTGGGAGCGTGAGCGGACGGCGACACCCGTTAGGGTGTTCGCCGTCCAGCTCCACGCGACCGGCTGTTCACTTAGAGAAACAAAAGAGATT
CTTCGATTGTTAGGCGTTCAACGCTCTCATCAAGCAATTTGGCAGTGGGTACATCAGATAGCTGACAGCGGTCACAATCCGCCTGAGGCGCAGCCGAAGC
GGGTTGCCGTAGACGAGACCGCTGTCAAAATCAATGGAGAGTGGTCTTGGCTGTATGCTGCAATAGACATCGAGACAAAATTGATTCTTGATGTCGAGTT
GTTCGGACGACATGGTACCGATCCGGCTGCGGCGTTCCTCCATCGACTGACCGAGAAACACGACCTCTCCGAGGCCGTTTTTCTCGTCGATGGCTACGGG
TACCAGACAGCCCTCGCTCGATTAGGCTTAAGCGGTCGGCTTGACTACGTCAAGCGAAACCTCATCGAAAAATGGTTTCACACGCTCAAAATGAGGATCG
ACCGCTTCCATAATTCATGGGTGGGCAGTCATGGATGCGTCCGTGAGTGGTTAATGCAGTTTGCACAATACTACAACTTTCAGCGACCGCATCAAGCTCT
TGATGGACGAACACCAGTTGAGGAGGTTATCTAGACAGTGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
675 bp | 224 aa | 60 | 734 | + | No |
Chemistry : DDE
ORF sequence :
MLADLLSESLAVDYQECWERERTATPVRVFAVQLHATGCSLRETKEILRLLGVQRSHQAIWQWVHQIADSGHNPPEAQPKRVAVDETAVKINGEWSWLYA
AIDIETKLILDVELFGRHGTDPAAAFLHRLTEKHDLSEAVFLVDGYGYQTALARLGLSGRLDYVKRNLIEKWFHTLKMRIDRFHNSWVGSHGCVREWLMQ
FAQYYNFQRPHQALDGRTPVEEVI
AIDIETKLILDVELFGRHGTDPAAAFLHRLTEKHDLSEAVFLVDGYGYQTALARLGLSGRLDYVKRNLIEKWFHTLKMRIDRFHNSWVGSHGCVREWLMQ
FAQYYNFQRPHQALDGRTPVEEVI
Blast result :
Comments
ISHli9 is 96% aa similar to ISHbo1.
References
1] Pfeiffer, F. (2013) Direct submission.
2] M. Dyall-Smith et al, in preparation.
2] M. Dyall-Smith et al, in preparation.