ISHli9

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Halohasta litchfieldiae
Halohasta litchfieldiae
DNA section
IS Length : 742 bp

Ends


IR Length : 18/22

IRL : GGCACTGTCTAGTTAAGCTAGTTTGAGAAGTGAGCAGGTCGTTGCGATAA
IRR : GGCACTGTCTAGATAACCTCCTCAACTGGTGTTCGTCCATCAAGAGCTTG

Insertion site


Left flankDirect repeatRight flankDR Length
TGAGGAAAGAGACCTGAGCAAATTGTATACTC8

DNA sequence

GGCACTGTCTAGTTAAGCTAGTTTGAGAAGTGAGCAGGTCGTTGCGATAATTGGTCAAAATGCTCGCAGACCTGCTCAGCGAGTCGTTAGCGGTGGATTA
TCAAGAATGTTGGGAGCGTGAGCGGACGGCGACACCCGTTAGGGTGTTCGCCGTCCAGCTCCACGCGACCGGCTGTTCACTTAGAGAAACAAAAGAGATT
CTTCGATTGTTAGGCGTTCAACGCTCTCATCAAGCAATTTGGCAGTGGGTACATCAGATAGCTGACAGCGGTCACAATCCGCCTGAGGCGCAGCCGAAGC
GGGTTGCCGTAGACGAGACCGCTGTCAAAATCAATGGAGAGTGGTCTTGGCTGTATGCTGCAATAGACATCGAGACAAAATTGATTCTTGATGTCGAGTT
GTTCGGACGACATGGTACCGATCCGGCTGCGGCGTTCCTCCATCGACTGACCGAGAAACACGACCTCTCCGAGGCCGTTTTTCTCGTCGATGGCTACGGG
TACCAGACAGCCCTCGCTCGATTAGGCTTAAGCGGTCGGCTTGACTACGTCAAGCGAAACCTCATCGAAAAATGGTTTCACACGCTCAAAATGAGGATCG
ACCGCTTCCATAATTCATGGGTGGGCAGTCATGGATGCGTCCGTGAGTGGTTAATGCAGTTTGCACAATACTACAACTTTCAGCGACCGCATCAAGCTCT
TGATGGACGAACACCAGTTGAGGAGGTTATCTAGACAGTGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
675 bp224 aa60734+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLADLLSESLAVDYQECWERERTATPVRVFAVQLHATGCSLRETKEILRLLGVQRSHQAIWQWVHQIADSGHNPPEAQPKRVAVDETAVKINGEWSWLYA
AIDIETKLILDVELFGRHGTDPAAAFLHRLTEKHDLSEAVFLVDGYGYQTALARLGLSGRLDYVKRNLIEKWFHTLKMRIDRFHNSWVGSHGCVREWLMQ
FAQYYNFQRPHQALDGRTPVEEVI

 

Blast result :
Comments
ISHli9 is 96% aa similar to ISHbo1.
References
1] Pfeiffer, F. (2013) Direct submission.
2] M. Dyall-Smith et al, in preparation.