ISHli8

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Halohasta litchfieldiae
Halohasta litchfieldiae
DNA section
IS Length : 745 bp

Ends


IR Length : 15/16

IRL : GGTACTGTCTAGTTAAGCCAGTTTGAGAAGTGAGCAGTTCGTGGTTTGAG
IRR : GGCACTGTCTAGTTAACGACCACCTCAGCTGGCGTTCGATCATCTAGCGA

Insertion site


Left flankDirect repeatRight flankDR Length
TATCGGTCAAACCTCGAGTCCATA0

DNA sequence

GGTACTGTCTAGTTAAGCCAGTTTGAGAAGTGAGCAGTTCGTGGTTTGAGTTGTCTATGCTGTCGCCAGAACTGCTCAGAGAGACGTTGGATACGGCAAA
TCTTGAATGTTGGGAGCGAGAGCGGACGGCGACGCCCGTCAGGGCGTTCGCTGTCCGACTCCACGCGACCGGTTGTTCACTCAGAGAAACACAAGCAATT
CTCCGACTATTTGGCGTTCAACGGTCTCATCAAGCAATCTTTCAGTGGGTACATCGAGTAGCTGACAGCGTTCCCGACCCGCCTGAGGCGCAGCCGAAGC
GGGTCGCTGTAGACGAAACCGCTGTCAAAATCAATGGCGAGTGGTCTTGGTTGTATGCTGCAATAGACCTCGACACCAAGTTGATTTTGGGTGTCGATCT
GTTCGGCACTCACGGGACCGATCCAACTGCTGCGTTTCTGCATGGACTCTCCGAGAAACACGACCTCTCCGAGGCCGTGTTTCTCGTCGATGGTTTCGGC
TATCAGACTGCCCTTGCTCGATTAGGACTCAGCGGTCGGCGTGATTATACAGACCGAAACCTGATCGAAAAATGGTTTCAGACGCTCAAAATGAGGATCG
ACCGCTTCCATAATTCGTGGGTGGGCAGTCGGTCGAGCGTTCGTCGCTGGTGTTCACAGTTTGCACATTATTATAACCGCCAGCGACCGCATCAATCGCT
AGATGATCGAACGCCAGCTGAGGTGGTCGTTAACTAGACAGTGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
681 bp226 aa57737+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLSPELLRETLDTANLECWERERTATPVRAFAVRLHATGCSLRETQAILRLFGVQRSHQAIFQWVHRVADSVPDPPEAQPKRVAVDETAVKINGEWSWLY
AAIDLDTKLILGVDLFGTHGTDPTAAFLHGLSEKHDLSEAVFLVDGFGYQTALARLGLSGRRDYTDRNLIEKWFQTLKMRIDRFHNSWVGSRSSVRRWCS
QFAHYYNRQRPHQSLDDRTPAEVVVN

 

Blast result :
Comments
ISHli8 is 97% aa similar to ISHla13.
References
1] Pfeiffer, F. (2013) Direct submission.
2] M. Dyall-Smith et al, in preparation.