ISHli8
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Halohasta litchfieldiae | Halohasta litchfieldiae |
DNA section
IS Length : 745 bp
Ends
IR Length : 15/16
IRL : GGTACTGTCTAGTTAAGCCAGTTTGAGAAGTGAGCAGTTCGTGGTTTGAG
IRR : GGCACTGTCTAGTTAACGACCACCTCAGCTGGCGTTCGATCATCTAGCGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TATCGGTCAAAC | CTCGAGTCCATA | 0 |
DNA sequence
GGTACTGTCTAGTTAAGCCAGTTTGAGAAGTGAGCAGTTCGTGGTTTGAGTTGTCTATGCTGTCGCCAGAACTGCTCAGAGAGACGTTGGATACGGCAAA
TCTTGAATGTTGGGAGCGAGAGCGGACGGCGACGCCCGTCAGGGCGTTCGCTGTCCGACTCCACGCGACCGGTTGTTCACTCAGAGAAACACAAGCAATT
CTCCGACTATTTGGCGTTCAACGGTCTCATCAAGCAATCTTTCAGTGGGTACATCGAGTAGCTGACAGCGTTCCCGACCCGCCTGAGGCGCAGCCGAAGC
GGGTCGCTGTAGACGAAACCGCTGTCAAAATCAATGGCGAGTGGTCTTGGTTGTATGCTGCAATAGACCTCGACACCAAGTTGATTTTGGGTGTCGATCT
GTTCGGCACTCACGGGACCGATCCAACTGCTGCGTTTCTGCATGGACTCTCCGAGAAACACGACCTCTCCGAGGCCGTGTTTCTCGTCGATGGTTTCGGC
TATCAGACTGCCCTTGCTCGATTAGGACTCAGCGGTCGGCGTGATTATACAGACCGAAACCTGATCGAAAAATGGTTTCAGACGCTCAAAATGAGGATCG
ACCGCTTCCATAATTCGTGGGTGGGCAGTCGGTCGAGCGTTCGTCGCTGGTGTTCACAGTTTGCACATTATTATAACCGCCAGCGACCGCATCAATCGCT
AGATGATCGAACGCCAGCTGAGGTGGTCGTTAACTAGACAGTGCC
TCTTGAATGTTGGGAGCGAGAGCGGACGGCGACGCCCGTCAGGGCGTTCGCTGTCCGACTCCACGCGACCGGTTGTTCACTCAGAGAAACACAAGCAATT
CTCCGACTATTTGGCGTTCAACGGTCTCATCAAGCAATCTTTCAGTGGGTACATCGAGTAGCTGACAGCGTTCCCGACCCGCCTGAGGCGCAGCCGAAGC
GGGTCGCTGTAGACGAAACCGCTGTCAAAATCAATGGCGAGTGGTCTTGGTTGTATGCTGCAATAGACCTCGACACCAAGTTGATTTTGGGTGTCGATCT
GTTCGGCACTCACGGGACCGATCCAACTGCTGCGTTTCTGCATGGACTCTCCGAGAAACACGACCTCTCCGAGGCCGTGTTTCTCGTCGATGGTTTCGGC
TATCAGACTGCCCTTGCTCGATTAGGACTCAGCGGTCGGCGTGATTATACAGACCGAAACCTGATCGAAAAATGGTTTCAGACGCTCAAAATGAGGATCG
ACCGCTTCCATAATTCGTGGGTGGGCAGTCGGTCGAGCGTTCGTCGCTGGTGTTCACAGTTTGCACATTATTATAACCGCCAGCGACCGCATCAATCGCT
AGATGATCGAACGCCAGCTGAGGTGGTCGTTAACTAGACAGTGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
681 bp | 226 aa | 57 | 737 | + | No |
Chemistry : DDE
ORF sequence :
MLSPELLRETLDTANLECWERERTATPVRAFAVRLHATGCSLRETQAILRLFGVQRSHQAIFQWVHRVADSVPDPPEAQPKRVAVDETAVKINGEWSWLY
AAIDLDTKLILGVDLFGTHGTDPTAAFLHGLSEKHDLSEAVFLVDGFGYQTALARLGLSGRRDYTDRNLIEKWFQTLKMRIDRFHNSWVGSRSSVRRWCS
QFAHYYNRQRPHQSLDDRTPAEVVVN
AAIDLDTKLILGVDLFGTHGTDPTAAFLHGLSEKHDLSEAVFLVDGFGYQTALARLGLSGRRDYTDRNLIEKWFQTLKMRIDRFHNSWVGSRSSVRRWCS
QFAHYYNRQRPHQSLDDRTPAEVVVN
Blast result :
Comments
ISHli8 is 97% aa similar to ISHla13.
References
1] Pfeiffer, F. (2013) Direct submission.
2] M. Dyall-Smith et al, in preparation.
2] M. Dyall-Smith et al, in preparation.