ISHli7

  • Family IS1595
  • Group ISH4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Halohasta litchfieldiae
Halohasta litchfieldiae
DNA section
IS Length : 1004 bp

Ends


IR Length : 22/28

IRL : CGCTCTTGGGTAGAGGATTGTTGGTCAGGGCTTAGCAGTAGCTGAAAGTC
IRR : CGCTCTTGTGGCGTAGATTGTTGGTGAGTTAGAGCACAGTTTCAAGAATT

Insertion site


Left flankDirect repeatRight flankDR Length
CATATAGGGATTAGCGATTAAATTCAGGATCA8

DNA sequence

CGCTCTTGGGTAGAGGATTGTTGGTCAGGGCTTAGCAGTAGCTGAAAGTCACAGCGGGCAAGGGTGACACGTTCGTGTCACCCGACAAACGATGTTTCCA
ATCAAGACGTTTGTCTCGGAGCGTCGAGCCGCGAACCTGCTACGACAGGTTCGCTGGCGTGACGGCGTCTATTGCCCACGCTGCCGTGCCGAATCTGTGA
TTCGGTACGGCGGCTATCGAGTGTTCCAGCGATACCAGTGTAAAAATTGCGACCGTACGTTCAACGATCAGACAGCCACAGTCTTTGAACACTCAGCGGT
TGCTCTCAAAAAATGGTTCCTCGCGGTCTACACCTACATCCGCTTCAACACGAGTTTTAGACAGCTCGACGTGGAAATTGACGTTTCCTACAAGACGATC
TATCGGCGCATCCAGCGCTTCCTGCGGGCGCTGGATGCGCCTCTGCCACACCTCGAAGGTCCTGTTGAGATCGACGAGCTGTACGTGAAAGCCGGACTCA
AAGGCCGCGAGCGCGACCAGCCGTCGCGCTCGCGTGGCCTGTCGACACGCGGGCGTGGAACATATGAAAAGGACAAGCCACCTGTGTTTATTTTGGCTGA
TCGCGGCACCGGTGAGCGGTACGTGATCCCAGCGAAAGCCGCCGATGAATCGACGATCCGACTCCTGCTGGCTGACCGCCACCAGGAGTCGCTGACTGTC
TATACCGACGGCTTTCGGGCGTATGAACCGCTTGAGGAGGACGACGAATTCACTCGTGAATACGTCGTCCACGGCGATGGCGAGTACGTTGATGGAGATG
TCCACGTCAATACCTGCGAGAGCCACGGATCGCTGGTGCGATCCTGGCTCTCGCCCCATCGAGGTATCTCCAAAGACAAACTCACGCCGTACCTCAGAGC
GTTTCAGCTTCGCCGTGAAGTCTTCCGAAAACCGGGAAAGGAGGCATTAGAAACAATTCTTGAAACTGTGCTCTAACTCACCAACAATCTACGCCACAAG
AGCG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
885 bp294 aa92976+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFPIKTFVSERRAANLLRQVRWRDGVYCPRCRAESVIRYGGYRVFQRYQCKNCDRTFNDQTATVFEHSAVALKKWFLAVYTYIRFNTSFRQLDVEIDVSY
KTIYRRIQRFLRALDAPLPHLEGPVEIDELYVKAGLKGRERDQPSRSRGLSTRGRGTYEKDKPPVFILADRGTGERYVIPAKAADESTIRLLLADRHQES
LTVYTDGFRAYEPLEEDDEFTREYVVHGDGEYVDGDVHVNTCESHGSLVRSWLSPHRGISKDKLTPYLRAFQLRREVFRKPGKEALETILETVL

 

Blast result :
Comments
ISHli7 is 94% aa similar to ISNagr7.
References
1] Pfeiffer, F. (2013) Direct submission.
2] M. Dyall-Smith et al, in preparation.