ISHli7
- Family IS1595
- Group ISH4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Halohasta litchfieldiae | Halohasta litchfieldiae |
DNA section
IS Length : 1004 bp
Ends
IR Length : 22/28
IRL : CGCTCTTGGGTAGAGGATTGTTGGTCAGGGCTTAGCAGTAGCTGAAAGTC
IRR : CGCTCTTGTGGCGTAGATTGTTGGTGAGTTAGAGCACAGTTTCAAGAATT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CATATAGGGATT | AGCGATTA | AATTCAGGATCA | 8 |
DNA sequence
CGCTCTTGGGTAGAGGATTGTTGGTCAGGGCTTAGCAGTAGCTGAAAGTCACAGCGGGCAAGGGTGACACGTTCGTGTCACCCGACAAACGATGTTTCCA
ATCAAGACGTTTGTCTCGGAGCGTCGAGCCGCGAACCTGCTACGACAGGTTCGCTGGCGTGACGGCGTCTATTGCCCACGCTGCCGTGCCGAATCTGTGA
TTCGGTACGGCGGCTATCGAGTGTTCCAGCGATACCAGTGTAAAAATTGCGACCGTACGTTCAACGATCAGACAGCCACAGTCTTTGAACACTCAGCGGT
TGCTCTCAAAAAATGGTTCCTCGCGGTCTACACCTACATCCGCTTCAACACGAGTTTTAGACAGCTCGACGTGGAAATTGACGTTTCCTACAAGACGATC
TATCGGCGCATCCAGCGCTTCCTGCGGGCGCTGGATGCGCCTCTGCCACACCTCGAAGGTCCTGTTGAGATCGACGAGCTGTACGTGAAAGCCGGACTCA
AAGGCCGCGAGCGCGACCAGCCGTCGCGCTCGCGTGGCCTGTCGACACGCGGGCGTGGAACATATGAAAAGGACAAGCCACCTGTGTTTATTTTGGCTGA
TCGCGGCACCGGTGAGCGGTACGTGATCCCAGCGAAAGCCGCCGATGAATCGACGATCCGACTCCTGCTGGCTGACCGCCACCAGGAGTCGCTGACTGTC
TATACCGACGGCTTTCGGGCGTATGAACCGCTTGAGGAGGACGACGAATTCACTCGTGAATACGTCGTCCACGGCGATGGCGAGTACGTTGATGGAGATG
TCCACGTCAATACCTGCGAGAGCCACGGATCGCTGGTGCGATCCTGGCTCTCGCCCCATCGAGGTATCTCCAAAGACAAACTCACGCCGTACCTCAGAGC
GTTTCAGCTTCGCCGTGAAGTCTTCCGAAAACCGGGAAAGGAGGCATTAGAAACAATTCTTGAAACTGTGCTCTAACTCACCAACAATCTACGCCACAAG
AGCG
ATCAAGACGTTTGTCTCGGAGCGTCGAGCCGCGAACCTGCTACGACAGGTTCGCTGGCGTGACGGCGTCTATTGCCCACGCTGCCGTGCCGAATCTGTGA
TTCGGTACGGCGGCTATCGAGTGTTCCAGCGATACCAGTGTAAAAATTGCGACCGTACGTTCAACGATCAGACAGCCACAGTCTTTGAACACTCAGCGGT
TGCTCTCAAAAAATGGTTCCTCGCGGTCTACACCTACATCCGCTTCAACACGAGTTTTAGACAGCTCGACGTGGAAATTGACGTTTCCTACAAGACGATC
TATCGGCGCATCCAGCGCTTCCTGCGGGCGCTGGATGCGCCTCTGCCACACCTCGAAGGTCCTGTTGAGATCGACGAGCTGTACGTGAAAGCCGGACTCA
AAGGCCGCGAGCGCGACCAGCCGTCGCGCTCGCGTGGCCTGTCGACACGCGGGCGTGGAACATATGAAAAGGACAAGCCACCTGTGTTTATTTTGGCTGA
TCGCGGCACCGGTGAGCGGTACGTGATCCCAGCGAAAGCCGCCGATGAATCGACGATCCGACTCCTGCTGGCTGACCGCCACCAGGAGTCGCTGACTGTC
TATACCGACGGCTTTCGGGCGTATGAACCGCTTGAGGAGGACGACGAATTCACTCGTGAATACGTCGTCCACGGCGATGGCGAGTACGTTGATGGAGATG
TCCACGTCAATACCTGCGAGAGCCACGGATCGCTGGTGCGATCCTGGCTCTCGCCCCATCGAGGTATCTCCAAAGACAAACTCACGCCGTACCTCAGAGC
GTTTCAGCTTCGCCGTGAAGTCTTCCGAAAACCGGGAAAGGAGGCATTAGAAACAATTCTTGAAACTGTGCTCTAACTCACCAACAATCTACGCCACAAG
AGCG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
885 bp | 294 aa | 92 | 976 | + | No |
Chemistry : DDE
ORF sequence :
MFPIKTFVSERRAANLLRQVRWRDGVYCPRCRAESVIRYGGYRVFQRYQCKNCDRTFNDQTATVFEHSAVALKKWFLAVYTYIRFNTSFRQLDVEIDVSY
KTIYRRIQRFLRALDAPLPHLEGPVEIDELYVKAGLKGRERDQPSRSRGLSTRGRGTYEKDKPPVFILADRGTGERYVIPAKAADESTIRLLLADRHQES
LTVYTDGFRAYEPLEEDDEFTREYVVHGDGEYVDGDVHVNTCESHGSLVRSWLSPHRGISKDKLTPYLRAFQLRREVFRKPGKEALETILETVL
KTIYRRIQRFLRALDAPLPHLEGPVEIDELYVKAGLKGRERDQPSRSRGLSTRGRGTYEKDKPPVFILADRGTGERYVIPAKAADESTIRLLLADRHQES
LTVYTDGFRAYEPLEEDDEFTREYVVHGDGEYVDGDVHVNTCESHGSLVRSWLSPHRGISKDKLTPYLRAFQLRREVFRKPGKEALETILETVL
Blast result :
Comments
ISHli7 is 94% aa similar to ISNagr7.
References
1] Pfeiffer, F. (2013) Direct submission.
2] M. Dyall-Smith et al, in preparation.
2] M. Dyall-Smith et al, in preparation.