ISHli6
- Family IS1595
- Group ISH4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Halohasta litchfieldiae | Halohasta litchfieldiae |
DNA section
IS Length : 1046 bp
Ends
IR Length : 27/35
IRL : CGCTCTTATGTAGAAACGTGGAAAGTCCATATAGCTACGGTCTACGGTGT
IRR : CGCTCTTATGTAGAGCTGTGGAATCCCCCAATAGCAAGGCAGTCGACGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATTTGTTGGTTA | ACCTGTTG | CGCTCTAATTGA | 8 |
DNA sequence
CGCTCTTATGTAGAAACGTGGAAAGTCCATATAGCTACGGTCTACGGTGTCAAATGAGGGAGTATGTCCTCCTCAGATCCAGCCTTCGGCCGGATGCTTC
GCCAGCTTGTCGATCTGGGCGTGATCACAATCAACACGGAGCCGCTCGATGCGGCCATCGAGCGGCGACTCAAGCAGTTCTGGGAGAGTACAACCTGCCC
TCGGTGCGGCAACCCAAGCCTCTACACTTGGGAATCATCTGACCGAGTCTGCTGTCGCAATTGTCCGTTTAAGCCCGTCTATACCTACGGTACACCGTTT
CACGAGAAACACCTCTCCTGCGGAGAGGTGCTTCTCGCGTTCATGCTCTATGCGGATACCTTGCTGAATATCTCGGATATCGAGGTCATACTAGATCGTG
CGTACAAGACGGTCTTCTATGCGATTCGAGAGGTTGAAGCCGCGGTTCACCGGGGCTTCCCCCTCGTCTGGAGTCAGTTCCAGCACGCGATCTCTGGACC
AACGCAGATCGACGAGTCTGGAAAGGTCTGTTCCGGATTCAAAGGCCAAGACCCGCCGCGAGACAGCCGTCATCGCGGCGGGTCGTCCCGGACTGGACGA
TCACGCTGGAAAGGTCGTCACGGCGATCAACTGACGCTCGTCGCGGCCTGCCGCGACGCGCTCCGAGTGATTCAGGGGAAACTTGGTATCGACTATGACA
CCGATTTAGAGCCTGTAATAGAGGAAACTGCCGACCTCTCCCAGCCGCTGGGAGAGGTCTGGACAGACGGTCTCCAAGCATATCGTCGGATGGAACACGA
CCACAAGATCGTGATTCACGACGAGACGTACGTCTCGTCAGAAGGAATCCACATCAACCAAGTGGAGTGCTTATTTTCGCTTGTCAAGCCGTGGCTCCGG
AAGTTTCGCGGCCTCTCCAAGCACGGCTTGGAGCAGGCCGCTCACACCTTCGGCATCGTCCGCTCAGTGAATCTCGTCGGCGCATCGTTCGAATTCCTCG
TCGACTGCCTTGCTATTGGGGGATTCCACAGCTCTACATAAGAGCG
GCCAGCTTGTCGATCTGGGCGTGATCACAATCAACACGGAGCCGCTCGATGCGGCCATCGAGCGGCGACTCAAGCAGTTCTGGGAGAGTACAACCTGCCC
TCGGTGCGGCAACCCAAGCCTCTACACTTGGGAATCATCTGACCGAGTCTGCTGTCGCAATTGTCCGTTTAAGCCCGTCTATACCTACGGTACACCGTTT
CACGAGAAACACCTCTCCTGCGGAGAGGTGCTTCTCGCGTTCATGCTCTATGCGGATACCTTGCTGAATATCTCGGATATCGAGGTCATACTAGATCGTG
CGTACAAGACGGTCTTCTATGCGATTCGAGAGGTTGAAGCCGCGGTTCACCGGGGCTTCCCCCTCGTCTGGAGTCAGTTCCAGCACGCGATCTCTGGACC
AACGCAGATCGACGAGTCTGGAAAGGTCTGTTCCGGATTCAAAGGCCAAGACCCGCCGCGAGACAGCCGTCATCGCGGCGGGTCGTCCCGGACTGGACGA
TCACGCTGGAAAGGTCGTCACGGCGATCAACTGACGCTCGTCGCGGCCTGCCGCGACGCGCTCCGAGTGATTCAGGGGAAACTTGGTATCGACTATGACA
CCGATTTAGAGCCTGTAATAGAGGAAACTGCCGACCTCTCCCAGCCGCTGGGAGAGGTCTGGACAGACGGTCTCCAAGCATATCGTCGGATGGAACACGA
CCACAAGATCGTGATTCACGACGAGACGTACGTCTCGTCAGAAGGAATCCACATCAACCAAGTGGAGTGCTTATTTTCGCTTGTCAAGCCGTGGCTCCGG
AAGTTTCGCGGCCTCTCCAAGCACGGCTTGGAGCAGGCCGCTCACACCTTCGGCATCGTCCGCTCAGTGAATCTCGTCGGCGCATCGTTCGAATTCCTCG
TCGACTGCCTTGCTATTGGGGGATTCCACAGCTCTACATAAGAGCG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
978 bp | 325 aa | 64 | 1041 | + | No |
Chemistry : DDE
ORF sequence :
MSSSDPAFGRMLRQLVDLGVITINTEPLDAAIERRLKQFWESTTCPRCGNPSLYTWESSDRVCCRNCPFKPVYTYGTPFHEKHLSCGEVLLAFMLYADTL
LNISDIEVILDRAYKTVFYAIREVEAAVHRGFPLVWSQFQHAISGPTQIDESGKVCSGFKGQDPPRDSRHRGGSSRTGRSRWKGRHGDQLTLVAACRDAL
RVIQGKLGIDYDTDLEPVIEETADLSQPLGEVWTDGLQAYRRMEHDHKIVIHDETYVSSEGIHINQVECLFSLVKPWLRKFRGLSKHGLEQAAHTFGIVR
SVNLVGASFEFLVDCLAIGGFHSST
LNISDIEVILDRAYKTVFYAIREVEAAVHRGFPLVWSQFQHAISGPTQIDESGKVCSGFKGQDPPRDSRHRGGSSRTGRSRWKGRHGDQLTLVAACRDAL
RVIQGKLGIDYDTDLEPVIEETADLSQPLGEVWTDGLQAYRRMEHDHKIVIHDETYVSSEGIHINQVECLFSLVKPWLRKFRGLSKHGLEQAAHTFGIVR
SVNLVGASFEFLVDCLAIGGFHSST
Blast result :
Comments
ISHli6 is 96% aa similar to ISHla12.
References
1] Pfeiffer, F. (2013) Direct submission.
2] M. Dyall-Smith et al, in preparation.
2] M. Dyall-Smith et al, in preparation.