ISHli6

  • Family IS1595
  • Group ISH4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Halohasta litchfieldiae
Halohasta litchfieldiae
DNA section
IS Length : 1046 bp

Ends


IR Length : 27/35

IRL : CGCTCTTATGTAGAAACGTGGAAAGTCCATATAGCTACGGTCTACGGTGT
IRR : CGCTCTTATGTAGAGCTGTGGAATCCCCCAATAGCAAGGCAGTCGACGAG

Insertion site


Left flankDirect repeatRight flankDR Length
ATTTGTTGGTTAACCTGTTGCGCTCTAATTGA8

DNA sequence

CGCTCTTATGTAGAAACGTGGAAAGTCCATATAGCTACGGTCTACGGTGTCAAATGAGGGAGTATGTCCTCCTCAGATCCAGCCTTCGGCCGGATGCTTC
GCCAGCTTGTCGATCTGGGCGTGATCACAATCAACACGGAGCCGCTCGATGCGGCCATCGAGCGGCGACTCAAGCAGTTCTGGGAGAGTACAACCTGCCC
TCGGTGCGGCAACCCAAGCCTCTACACTTGGGAATCATCTGACCGAGTCTGCTGTCGCAATTGTCCGTTTAAGCCCGTCTATACCTACGGTACACCGTTT
CACGAGAAACACCTCTCCTGCGGAGAGGTGCTTCTCGCGTTCATGCTCTATGCGGATACCTTGCTGAATATCTCGGATATCGAGGTCATACTAGATCGTG
CGTACAAGACGGTCTTCTATGCGATTCGAGAGGTTGAAGCCGCGGTTCACCGGGGCTTCCCCCTCGTCTGGAGTCAGTTCCAGCACGCGATCTCTGGACC
AACGCAGATCGACGAGTCTGGAAAGGTCTGTTCCGGATTCAAAGGCCAAGACCCGCCGCGAGACAGCCGTCATCGCGGCGGGTCGTCCCGGACTGGACGA
TCACGCTGGAAAGGTCGTCACGGCGATCAACTGACGCTCGTCGCGGCCTGCCGCGACGCGCTCCGAGTGATTCAGGGGAAACTTGGTATCGACTATGACA
CCGATTTAGAGCCTGTAATAGAGGAAACTGCCGACCTCTCCCAGCCGCTGGGAGAGGTCTGGACAGACGGTCTCCAAGCATATCGTCGGATGGAACACGA
CCACAAGATCGTGATTCACGACGAGACGTACGTCTCGTCAGAAGGAATCCACATCAACCAAGTGGAGTGCTTATTTTCGCTTGTCAAGCCGTGGCTCCGG
AAGTTTCGCGGCCTCTCCAAGCACGGCTTGGAGCAGGCCGCTCACACCTTCGGCATCGTCCGCTCAGTGAATCTCGTCGGCGCATCGTTCGAATTCCTCG
TCGACTGCCTTGCTATTGGGGGATTCCACAGCTCTACATAAGAGCG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
978 bp325 aa641041+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSSSDPAFGRMLRQLVDLGVITINTEPLDAAIERRLKQFWESTTCPRCGNPSLYTWESSDRVCCRNCPFKPVYTYGTPFHEKHLSCGEVLLAFMLYADTL
LNISDIEVILDRAYKTVFYAIREVEAAVHRGFPLVWSQFQHAISGPTQIDESGKVCSGFKGQDPPRDSRHRGGSSRTGRSRWKGRHGDQLTLVAACRDAL
RVIQGKLGIDYDTDLEPVIEETADLSQPLGEVWTDGLQAYRRMEHDHKIVIHDETYVSSEGIHINQVECLFSLVKPWLRKFRGLSKHGLEQAAHTFGIVR
SVNLVGASFEFLVDCLAIGGFHSST

 

Blast result :
Comments
ISHli6 is 96% aa similar to ISHla12.
References
1] Pfeiffer, F. (2013) Direct submission.
2] M. Dyall-Smith et al, in preparation.