ISHvo9
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001956 | ND | Haloferax volcanii | Haloferax volcanii DS2 Haloferax volcanii DS2p pHV4 |
DNA section
IS Length : 1462 bp
Ends
IR Length : 14
IRL : gtgctgacttgATGGAAATTCTGCTATCCCATCGGAGCGTGAATCAATTA
IRR : --tattcacctATGGAAATTCTGCTGGCTCAACTAACCACCGCTGGCGAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTATTGACTG | CACGGCCTGG | 0 | |
TCGGAGGGGT | GAGAGATGTA | 0 | |
TTTCACAGCC | CAGCGCGCAA | 0 | |
CATATGTAGC | TAGAGGGGGA | 0 |
DNA sequence
GTGCTGACTTGATGGAAATTCTGCTATCCCATCGGAGCGTGAATCAATTATGGGACGCAAGAGACCGAGCTGTATTCCGTGCGCTAGAGCACGTGGTGCT
GACTGGTCCGAGTGCGAAAGAAGCCGAGTTATGGGCGTCACAGCCCGGATGCCGCTCCTGGCGGCATCCGGGAAAGCCCGCATAGGTGAATTTCTGATTC
ACGCACCGCCGTCCTATCCCGGAGGAACGAACCATGTACCTCGGAATCGACCTACACAAACGATACGCACAGGTGGCAGTAATGGACCTCGAGGGCGAGA
TTGTCGAAGAGGTTCGCGTCAAAAACGCGAACCTCGACGACCTCGCTCAGCGATACGCTGGCTCTCGTGCAGTAATCGAGGCGACCAGCAATTACTACCA
CGTCTACGATACTCTCGCGGAGTACTTGGACGTAACCGTCGCTCATCCAGGCAAACTGACGCTCATCGCTCGGTCAGACAAGAAAACCGACCGCGTCGAC
GCGAAAGAACTCGCGCGGCTGCTCCGGCTGAACTCTGTTCCGCAGAGTTACGTTCCTACCGACGAGATTCGGGAAGCCCGCGCACTCGTGCGCGGGCGAC
AGACCTTGGTCGAAGATCGGACCAAGTTCGCCAACAAAATCCACGGCTTGCTCGCCGATAACGGCATCACTCAGACGGTAAAACCGCTGAGTGTCGAGGG
ACGAGAGTTCCTCCGGGAACTCTCGCTCCCGTCTCCGTGGGACAGTCTCTTGGACTCGTATCTCGACGTGGTCGAGACGCTAACCGAGCAGATGACTCAG
TTGGAAGCGGCGATTGAGGAGCGCGCTGGGTCTCTGAAGGAGACCCAGCTGCTGATGACCATCCCCGGTGTCAGTTACTACTCCGCGTTGCTGGTCTACG
CTGAACTGGGTGAGATCGATCGGTTCGACGGCCACAAAGAGGTCGTGAGTTACATGGGACTGAACCCGACGATCCGCGAGTCCGGTGACTCGCGGATCGA
GGGTGGTATCTCGAAACGCGGCTCAGGACGAGTTCGCTGGATCTTGGTTCAGAGTGCGTACTCAGCCGTGTACACGTGTAAAGACGCGTATCTAAGCACG
TTCTTCCACCGGTTGAATCGTCGAATGAACTCGAAAAAAGCGATCGTCGCGACGGCACGAAAACTGCTCGTCTCGATGTACTACATGCTCGTCCGAGAGG
AAGTCTACGATCCACCGGGGGTGAGCGCCTGAAGAAGGGAATCTGAGGAACGCCGGACCGGCGTTCCTCAGTGGCCGGATGAGGCCAGCGTAAGCGACAG
CTCTAGCAAGACTCGTTCCGACCGCCTACCGGTTGTGGAGGTCTCAATCACCACGTTGTCTAGTGGTTTCTCGTCGTTGAGGGACTAGAGAAGCTAGATC
GTGCGAACAACTTTATCGCCAGCGGTGGTTAGTTGAGCCAGCAGAATTTCCATAGGTGAATA
GACTGGTCCGAGTGCGAAAGAAGCCGAGTTATGGGCGTCACAGCCCGGATGCCGCTCCTGGCGGCATCCGGGAAAGCCCGCATAGGTGAATTTCTGATTC
ACGCACCGCCGTCCTATCCCGGAGGAACGAACCATGTACCTCGGAATCGACCTACACAAACGATACGCACAGGTGGCAGTAATGGACCTCGAGGGCGAGA
TTGTCGAAGAGGTTCGCGTCAAAAACGCGAACCTCGACGACCTCGCTCAGCGATACGCTGGCTCTCGTGCAGTAATCGAGGCGACCAGCAATTACTACCA
CGTCTACGATACTCTCGCGGAGTACTTGGACGTAACCGTCGCTCATCCAGGCAAACTGACGCTCATCGCTCGGTCAGACAAGAAAACCGACCGCGTCGAC
GCGAAAGAACTCGCGCGGCTGCTCCGGCTGAACTCTGTTCCGCAGAGTTACGTTCCTACCGACGAGATTCGGGAAGCCCGCGCACTCGTGCGCGGGCGAC
AGACCTTGGTCGAAGATCGGACCAAGTTCGCCAACAAAATCCACGGCTTGCTCGCCGATAACGGCATCACTCAGACGGTAAAACCGCTGAGTGTCGAGGG
ACGAGAGTTCCTCCGGGAACTCTCGCTCCCGTCTCCGTGGGACAGTCTCTTGGACTCGTATCTCGACGTGGTCGAGACGCTAACCGAGCAGATGACTCAG
TTGGAAGCGGCGATTGAGGAGCGCGCTGGGTCTCTGAAGGAGACCCAGCTGCTGATGACCATCCCCGGTGTCAGTTACTACTCCGCGTTGCTGGTCTACG
CTGAACTGGGTGAGATCGATCGGTTCGACGGCCACAAAGAGGTCGTGAGTTACATGGGACTGAACCCGACGATCCGCGAGTCCGGTGACTCGCGGATCGA
GGGTGGTATCTCGAAACGCGGCTCAGGACGAGTTCGCTGGATCTTGGTTCAGAGTGCGTACTCAGCCGTGTACACGTGTAAAGACGCGTATCTAAGCACG
TTCTTCCACCGGTTGAATCGTCGAATGAACTCGAAAAAAGCGATCGTCGCGACGGCACGAAAACTGCTCGTCTCGATGTACTACATGCTCGTCCGAGAGG
AAGTCTACGATCCACCGGGGGTGAGCGCCTGAAGAAGGGAATCTGAGGAACGCCGGACCGGCGTTCCTCAGTGGCCGGATGAGGCCAGCGTAAGCGACAG
CTCTAGCAAGACTCGTTCCGACCGCCTACCGGTTGTGGAGGTCTCAATCACCACGTTGTCTAGTGGTTTCTCGTCGTTGAGGGACTAGAGAAGCTAGATC
GTGCGAACAACTTTATCGCCAGCGGTGGTTAGTTGAGCCAGCAGAATTTCCATAGGTGAATA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
999 bp | 332 aa | 234 | 1232 | + | No |
Chemistry : DEDD
ORF sequence :
MYLGIDLHKRYAQVAVMDLEGEIVEEVRVKNANLDDLAQRYAGSRAVIEATSNYYHVYDTLAEYLDVTVAHPGKLTLIARSDKKTDRVDAKELARLLRLN
SVPQSYVPTDEIREARALVRGRQTLVEDRTKFANKIHGLLADNGITQTVKPLSVEGREFLRELSLPSPWDSLLDSYLDVVETLTEQMTQLEAAIEERAGS
LKETQLLMTIPGVSYYSALLVYAELGEIDRFDGHKEVVSYMGLNPTIRESGDSRIEGGISKRGSGRVRWILVQSAYSAVYTCKDAYLSTFFHRLNRRMNS
KKAIVATARKLLVSMYYMLVREEVYDPPGVSA
SVPQSYVPTDEIREARALVRGRQTLVEDRTKFANKIHGLLADNGITQTVKPLSVEGREFLRELSLPSPWDSLLDSYLDVVETLTEQMTQLEAAIEERAGS
LKETQLLMTIPGVSYYSALLVYAELGEIDRFDGHKEVVSYMGLNPTIRESGDSRIEGGISKRGSGRVRWILVQSAYSAVYTCKDAYLSTFFHRLNRRMNS
KKAIVATARKLLVSMYYMLVREEVYDPPGVSA
Blast result :
Comments
ISHvo9 is 93% aa similar to ISH18.
The IR of this IS are not at its termini. In the IS sequence as given 611 nt separate IRl from the left-hand end of the element and 9 nt separate IRr from the right-hand end
The IR of this IS are not at its termini. In the IS sequence as given 611 nt separate IRl from the left-hand end of the element and 9 nt separate IRr from the right-hand end
References
1] Hartman, A.L., Norais, C., Badger, J.H., Delmas, S., Haldenby, S., Madupu, R., Robinson, J., Khouri, H., Ren, Q., Lowe, T.M., Maupin-Furlow, J., Pohlschroder, M., Daniels, C., Pfeiffer, F.,
Allers, T., Eisen, J.A. (2010) PLoS ONE 5, E9605-E9605
Allers, T., Eisen, J.A. (2010) PLoS ONE 5, E9605-E9605