ISNpe12

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003373 ND Natrinema pellirubrum
Natrinema pellirubrum DSM 15624 plasmid pNATPE01
DNA section
IS Length : 1399 bp

Ends


Left end : AGGCGGGACGAGGCGGATGCCCCGACCCTTGAGGTCGGGGAGGAAGCTGACACCCGATGACACAAACCACGCTACGATGGCGGGACGACTCCCCGACGTA II struct. : Yes
Right end : ACGTTGAACGTGAGTGGGGAGTACGTGCCCCCTGCTTCGGTTGAGGCATAGAACGGGAGTCCACGCGAAAGCCTCGGGGCTTGACCCCGAGGCAATTTAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CTATGCCGATTCACAGGCAGATCGttac

DNA sequence

AGGCGGGACGAGGCGGATGCCCCGACCCTTGAGGTCGGGGAGGAAGCTGACACCCGATGACACAAACCACGCTACGATGGCGGGACGACTCCCCGACGTA
TAAGTAACTTCGCCCGTATATGTGAAAATACAGTGGAGTACCGCCGTACCGCCGTCATCAAACTCGACACTCCCGAAGGGGCGGACGCCTCTCTTCGAGA
GACGGTCGAGCAGTTCAAACACTGCGCCAACACCGCATCGGAGTGGTGCTGGCACGGCGACGACGGATACCACGTCACCTCGAAAGCCAAAGCCGAACAC
GCCCTCTATGACCAACTCCGCGACGAAACCGACCTTACCGCCAACCTCGTTCAGAAAGGGATTCGTAGAGCGGTTGAAGCCGTCAAAAGTGGCGTCGAAC
GCCTCAAACGTGGTGAGAACACGTCGAAACCACACTTTTCGGCAGACAGCGCAGTTTACGACAAGCGGAGTGCGACGTTCCACCGAGATCATGTTTCCCT
TTCAACCGTAGACGGGCGCATTGAGTGCGACTACATCCTCCCTGACAGCTCGGAGACACCACCCACGAAGTACGTTTCTGACGAGGCCTTCGAGTTTCGG
ATGGCACACTTGCAGTACCGCGATGGTGACTGGTACCTCCACGCCTCGATGCGGAAAGTCGAAGCAGACGAGGAATCGTCTAAATCCGAATCCAAGCACA
GAACAGTCCTTGGTGTGGATTTAGGCGTCAACAACCTTGCCGTCGCTTCGACTGGGCGGTTCTGGTCGGCAGACGAGTTCAACCACTGGCGCAGAGAATA
CGAGAAGCGTCGTGGGTCGCTTCAGCAGTGTGACTCTCGGTACGCCCACGAGAACATCGAGAGCGTTGGACAGAAAGAGTACGGACGCTTCGAAATATAC
TTGCACACGGTGGCGAACGAACTTATCGAAGAGGCCGTTGAGAACAGCTGCTCGCATATTGTGTTCGAGGATTTGACCCACATCCGAGAGAACATTCCTG
AAGCGACGTGGCAACACATCTGGGCGTTTCGACGCCTCTACGAGTACGTTGAATACAAGGCCAAAGAACACAGCGTCGAAGCTGTACAGGTAGACCCGCG
TAACACGTCGAATCGGTGTTCGACGTGTGGGTTTACCCACGACGATAACCGGAACGAGGAGTCGTTCAAGTGTCAGCAGTGCGGTTATGAGAACCACGCC
GACTACAACGCTGCGAAAAACATCGGTTTACAGTATCTCCGACGTCGGCAAAACGCAGGCGACGGAGGCGCACCCGTAGATGTGCGCTTGAATCGCGGGA
CGTTGAACGTGAGTGGGGAGTACGTGCCCCCTGCTTCGGTTGAGGCATAGAACGGGAGTCCACGCGAAAGCCTCGGGGCTTGACCCCGAGGCAATTTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1218 bp405 aa1331350+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MEYRRTAVIKLDTPEGADASLRETVEQFKHCANTASEWCWHGDDGYHVTSKAKAEHALYDQLRDETDLTANLVQKGIRRAVEAVKSGVERLKRGENTSKP
HFSADSAVYDKRSATFHRDHVSLSTVDGRIECDYILPDSSETPPTKYVSDEAFEFRMAHLQYRDGDWYLHASMRKVEADEESSKSESKHRTVLGVDLGVN
NLAVASTGRFWSADEFNHWRREYEKRRGSLQQCDSRYAHENIESVGQKEYGRFEIYLHTVANELIEEAVENSCSHIVFEDLTHIRENIPEATWQHIWAFR
RLYEYVEYKAKEHSVEAVQVDPRNTSNRCSTCGFTHDDNRNEESFKCQQCGYENHADYNAAKNIGLQYLRRRQNAGDGGAPVDVRLNRGTLNVSGEYVPP
ASVEA

 

Blast result :
Comments
ISNpe12 is 87% (ORFB) aa similar to ISNph21.
References
1] F. Pfeiffer (2013) Direct submission.
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank.