ISNpe12
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003373 | ND | Natrinema pellirubrum | Natrinema pellirubrum DSM 15624 plasmid pNATPE01 |
DNA section
IS Length : 1399 bp
Ends
Left end : AGGCGGGACGAGGCGGATGCCCCGACCCTTGAGGTCGGGGAGGAAGCTGACACCCGATGACACAAACCACGCTACGATGGCGGGACGACTCCCCGACGTA II struct. : Yes
Right end : ACGTTGAACGTGAGTGGGGAGTACGTGCCCCCTGCTTCGGTTGAGGCATAGAACGGGAGTCCACGCGAAAGCCTCGGGGCTTGACCCCGAGGCAATTTAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CTATGCCGAT | TCAC | AGGCAGATCG | ttac |
DNA sequence
AGGCGGGACGAGGCGGATGCCCCGACCCTTGAGGTCGGGGAGGAAGCTGACACCCGATGACACAAACCACGCTACGATGGCGGGACGACTCCCCGACGTA
TAAGTAACTTCGCCCGTATATGTGAAAATACAGTGGAGTACCGCCGTACCGCCGTCATCAAACTCGACACTCCCGAAGGGGCGGACGCCTCTCTTCGAGA
GACGGTCGAGCAGTTCAAACACTGCGCCAACACCGCATCGGAGTGGTGCTGGCACGGCGACGACGGATACCACGTCACCTCGAAAGCCAAAGCCGAACAC
GCCCTCTATGACCAACTCCGCGACGAAACCGACCTTACCGCCAACCTCGTTCAGAAAGGGATTCGTAGAGCGGTTGAAGCCGTCAAAAGTGGCGTCGAAC
GCCTCAAACGTGGTGAGAACACGTCGAAACCACACTTTTCGGCAGACAGCGCAGTTTACGACAAGCGGAGTGCGACGTTCCACCGAGATCATGTTTCCCT
TTCAACCGTAGACGGGCGCATTGAGTGCGACTACATCCTCCCTGACAGCTCGGAGACACCACCCACGAAGTACGTTTCTGACGAGGCCTTCGAGTTTCGG
ATGGCACACTTGCAGTACCGCGATGGTGACTGGTACCTCCACGCCTCGATGCGGAAAGTCGAAGCAGACGAGGAATCGTCTAAATCCGAATCCAAGCACA
GAACAGTCCTTGGTGTGGATTTAGGCGTCAACAACCTTGCCGTCGCTTCGACTGGGCGGTTCTGGTCGGCAGACGAGTTCAACCACTGGCGCAGAGAATA
CGAGAAGCGTCGTGGGTCGCTTCAGCAGTGTGACTCTCGGTACGCCCACGAGAACATCGAGAGCGTTGGACAGAAAGAGTACGGACGCTTCGAAATATAC
TTGCACACGGTGGCGAACGAACTTATCGAAGAGGCCGTTGAGAACAGCTGCTCGCATATTGTGTTCGAGGATTTGACCCACATCCGAGAGAACATTCCTG
AAGCGACGTGGCAACACATCTGGGCGTTTCGACGCCTCTACGAGTACGTTGAATACAAGGCCAAAGAACACAGCGTCGAAGCTGTACAGGTAGACCCGCG
TAACACGTCGAATCGGTGTTCGACGTGTGGGTTTACCCACGACGATAACCGGAACGAGGAGTCGTTCAAGTGTCAGCAGTGCGGTTATGAGAACCACGCC
GACTACAACGCTGCGAAAAACATCGGTTTACAGTATCTCCGACGTCGGCAAAACGCAGGCGACGGAGGCGCACCCGTAGATGTGCGCTTGAATCGCGGGA
CGTTGAACGTGAGTGGGGAGTACGTGCCCCCTGCTTCGGTTGAGGCATAGAACGGGAGTCCACGCGAAAGCCTCGGGGCTTGACCCCGAGGCAATTTAC
TAAGTAACTTCGCCCGTATATGTGAAAATACAGTGGAGTACCGCCGTACCGCCGTCATCAAACTCGACACTCCCGAAGGGGCGGACGCCTCTCTTCGAGA
GACGGTCGAGCAGTTCAAACACTGCGCCAACACCGCATCGGAGTGGTGCTGGCACGGCGACGACGGATACCACGTCACCTCGAAAGCCAAAGCCGAACAC
GCCCTCTATGACCAACTCCGCGACGAAACCGACCTTACCGCCAACCTCGTTCAGAAAGGGATTCGTAGAGCGGTTGAAGCCGTCAAAAGTGGCGTCGAAC
GCCTCAAACGTGGTGAGAACACGTCGAAACCACACTTTTCGGCAGACAGCGCAGTTTACGACAAGCGGAGTGCGACGTTCCACCGAGATCATGTTTCCCT
TTCAACCGTAGACGGGCGCATTGAGTGCGACTACATCCTCCCTGACAGCTCGGAGACACCACCCACGAAGTACGTTTCTGACGAGGCCTTCGAGTTTCGG
ATGGCACACTTGCAGTACCGCGATGGTGACTGGTACCTCCACGCCTCGATGCGGAAAGTCGAAGCAGACGAGGAATCGTCTAAATCCGAATCCAAGCACA
GAACAGTCCTTGGTGTGGATTTAGGCGTCAACAACCTTGCCGTCGCTTCGACTGGGCGGTTCTGGTCGGCAGACGAGTTCAACCACTGGCGCAGAGAATA
CGAGAAGCGTCGTGGGTCGCTTCAGCAGTGTGACTCTCGGTACGCCCACGAGAACATCGAGAGCGTTGGACAGAAAGAGTACGGACGCTTCGAAATATAC
TTGCACACGGTGGCGAACGAACTTATCGAAGAGGCCGTTGAGAACAGCTGCTCGCATATTGTGTTCGAGGATTTGACCCACATCCGAGAGAACATTCCTG
AAGCGACGTGGCAACACATCTGGGCGTTTCGACGCCTCTACGAGTACGTTGAATACAAGGCCAAAGAACACAGCGTCGAAGCTGTACAGGTAGACCCGCG
TAACACGTCGAATCGGTGTTCGACGTGTGGGTTTACCCACGACGATAACCGGAACGAGGAGTCGTTCAAGTGTCAGCAGTGCGGTTATGAGAACCACGCC
GACTACAACGCTGCGAAAAACATCGGTTTACAGTATCTCCGACGTCGGCAAAACGCAGGCGACGGAGGCGCACCCGTAGATGTGCGCTTGAATCGCGGGA
CGTTGAACGTGAGTGGGGAGTACGTGCCCCCTGCTTCGGTTGAGGCATAGAACGGGAGTCCACGCGAAAGCCTCGGGGCTTGACCCCGAGGCAATTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1218 bp | 405 aa | 133 | 1350 | + | No |
AG : TnpB
ORF sequence :
MEYRRTAVIKLDTPEGADASLRETVEQFKHCANTASEWCWHGDDGYHVTSKAKAEHALYDQLRDETDLTANLVQKGIRRAVEAVKSGVERLKRGENTSKP
HFSADSAVYDKRSATFHRDHVSLSTVDGRIECDYILPDSSETPPTKYVSDEAFEFRMAHLQYRDGDWYLHASMRKVEADEESSKSESKHRTVLGVDLGVN
NLAVASTGRFWSADEFNHWRREYEKRRGSLQQCDSRYAHENIESVGQKEYGRFEIYLHTVANELIEEAVENSCSHIVFEDLTHIRENIPEATWQHIWAFR
RLYEYVEYKAKEHSVEAVQVDPRNTSNRCSTCGFTHDDNRNEESFKCQQCGYENHADYNAAKNIGLQYLRRRQNAGDGGAPVDVRLNRGTLNVSGEYVPP
ASVEA
HFSADSAVYDKRSATFHRDHVSLSTVDGRIECDYILPDSSETPPTKYVSDEAFEFRMAHLQYRDGDWYLHASMRKVEADEESSKSESKHRTVLGVDLGVN
NLAVASTGRFWSADEFNHWRREYEKRRGSLQQCDSRYAHENIESVGQKEYGRFEIYLHTVANELIEEAVENSCSHIVFEDLTHIRENIPEATWQHIWAFR
RLYEYVEYKAKEHSVEAVQVDPRNTSNRCSTCGFTHDDNRNEESFKCQQCGYENHADYNAAKNIGLQYLRRRQNAGDGGAPVDVRLNRGTLNVSGEYVPP
ASVEA
Blast result :
Comments
ISNpe12 is 87% (ORFB) aa similar to ISNph21.
References
1] F. Pfeiffer (2013) Direct submission.
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank.
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank.