ISNpe11
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003373 | ND | Natrinema pellirubrum | Natrinema pellirubrum DSM 15624 plasmid pNATPE01 |
DNA section
IS Length : 1613 bp
Ends
Left end : ACGTAGCGAGCGGAAGCCCATCCCTTTAGGGGTAGGTGTAAGCGACAGCATGGCTTGGCAATCCACGCGCTATTACTCGTCTGGAGGTTCCACCGCTTCC II struct. : Yes
Right end : AAACCAGAGTACCGACGACGGGAAACTTGCCTCCGTGGGTACGGCATAGCCAACATCCCACCGGAGGAATCCCTCCCCTTTAGGGGTGGGAGGATGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TCACCGTCGA | TGAC | GAAGATCCGC | tcaa |
DNA sequence
ACGTAGCGAGCGGAAGCCCATCCCTTTAGGGGTAGGTGTAAGCGACAGCATGGCTTGGCAATCCACGCGCTATTACTCGTCTGGAGGTTCCACCGCTTCC
AACCCCGCTTCGATAATCTCCTGATAGGCTTCTTCGAGGCTCACGTCCTGCTGTTCGGCGTAGTCTTTCACGCGCCCGTTCAACGTGTGCGAAATGTCGA
TGTTCGGTCGCATCGCCTATGTCCAAAAGACATTTAGACATAGAACTACAAATGTCTGTTGTCGTGAGGCGAACCAACACATTCGCGGTGCGCCCGCTCT
CCACGCAGGACGAGCAACTGCTCCACGAGCTGTTGGACGCCTCCGCCAGCCTGTGGAACGAACTCACCTACGAACGTCGCCAGAACTTCTTTGACGGCGA
GTCGGTGTGGGATACCGCCGACTACCGCAAGCAGTACGTCGGTGTCCTTGGCTCTGCCACCGCTCAACAGGTCATCCGCAAGAACAGCGAGGCGTGGCGG
TCGTTCTTCGCTGCCCGAGAGGATGGCGAGGACGCCGCCCCGCCCGGATACTGGGGCAACGAAGATGAGGGTCGGGAACTCCGCACGTTCATCCGCAACG
ACCAGTACACCCTCGAAATCGGCGAACGGAGCCGCCTCGAAATCCCTGTCGGCCAAGACTTAAAAGACGAGTACGGACTTGGCTACCAGGAGCGCCTACG
CCTCGAAGTCGCTGGCAACCCGAAATGGGAGGGCGAACAGGGTCGGTTGGAACTGTACTACGACGAGGTCGAAGACACGTTCAGGGCCATTCAACCCGTT
ACCGTACCTGATTCTCGACGGGATTCACCACTAGCCGAGGAATCGGCTGCCTTGGACGTTGGCGCGAACAACCTCGTCGCCTGTACTACCACAACCGGCC
AGCAGTACCTCTACGAGGGCCGCGACCTGTTCGTCCGCTTCCGCGAAACCACCGAGGAGATCGCCCGCTTGCAATCGAAACTCCGCGAGGGCCGGTACAG
CAGTCGCCGGATTCGACGCCTCTACCGCAAGCGGACACGCCGACGCGACCACGCACAGGACACGCTCGTGCGGGACTTGATGGAACGACTGTACGACGAG
GGCGTTGCCACCGTATACGTGGGCCACCTCAACGATGTGCTGTCGGAACATTGGTCGGCGCGAGTGAACGAGAAAACGCACCAATTCTGGGCGTATCGCT
CGTTCATCGACCGTCTCGCCACGACCGCCGAGGAGTATGGCATCACGGTCGAAATCGAGTCAGAAGCATACACGACGGCGGAGTGCCCCGTGTGTGGCGA
GCGAGACGAGACAGAGCGGGCCGGCGACGTGTTCCGGTGTTCGTGTGGCTACGAGGGACACGCCGACCTCGGTGCCTCGCGGACGTTCCTCGAACGACAG
GCTGGCAAAGAAGTCGGGTCGATGGCACGGCCCGTGCGCCTCAAGTGGGACGACCATACGTGGTCGGAGTCGTCACGCTCTCCCGAGAGGGCAAGTCCCA
ACGAGGAGCGCACAAACCAGAGTACCGACGACGGGAAACTTGCCTCCGTGGGTACGGCATAGCCAACATCCCACCGGAGGAATCCCTCCCCTTTAGGGGT
GGGAGGATGTCAA
AACCCCGCTTCGATAATCTCCTGATAGGCTTCTTCGAGGCTCACGTCCTGCTGTTCGGCGTAGTCTTTCACGCGCCCGTTCAACGTGTGCGAAATGTCGA
TGTTCGGTCGCATCGCCTATGTCCAAAAGACATTTAGACATAGAACTACAAATGTCTGTTGTCGTGAGGCGAACCAACACATTCGCGGTGCGCCCGCTCT
CCACGCAGGACGAGCAACTGCTCCACGAGCTGTTGGACGCCTCCGCCAGCCTGTGGAACGAACTCACCTACGAACGTCGCCAGAACTTCTTTGACGGCGA
GTCGGTGTGGGATACCGCCGACTACCGCAAGCAGTACGTCGGTGTCCTTGGCTCTGCCACCGCTCAACAGGTCATCCGCAAGAACAGCGAGGCGTGGCGG
TCGTTCTTCGCTGCCCGAGAGGATGGCGAGGACGCCGCCCCGCCCGGATACTGGGGCAACGAAGATGAGGGTCGGGAACTCCGCACGTTCATCCGCAACG
ACCAGTACACCCTCGAAATCGGCGAACGGAGCCGCCTCGAAATCCCTGTCGGCCAAGACTTAAAAGACGAGTACGGACTTGGCTACCAGGAGCGCCTACG
CCTCGAAGTCGCTGGCAACCCGAAATGGGAGGGCGAACAGGGTCGGTTGGAACTGTACTACGACGAGGTCGAAGACACGTTCAGGGCCATTCAACCCGTT
ACCGTACCTGATTCTCGACGGGATTCACCACTAGCCGAGGAATCGGCTGCCTTGGACGTTGGCGCGAACAACCTCGTCGCCTGTACTACCACAACCGGCC
AGCAGTACCTCTACGAGGGCCGCGACCTGTTCGTCCGCTTCCGCGAAACCACCGAGGAGATCGCCCGCTTGCAATCGAAACTCCGCGAGGGCCGGTACAG
CAGTCGCCGGATTCGACGCCTCTACCGCAAGCGGACACGCCGACGCGACCACGCACAGGACACGCTCGTGCGGGACTTGATGGAACGACTGTACGACGAG
GGCGTTGCCACCGTATACGTGGGCCACCTCAACGATGTGCTGTCGGAACATTGGTCGGCGCGAGTGAACGAGAAAACGCACCAATTCTGGGCGTATCGCT
CGTTCATCGACCGTCTCGCCACGACCGCCGAGGAGTATGGCATCACGGTCGAAATCGAGTCAGAAGCATACACGACGGCGGAGTGCCCCGTGTGTGGCGA
GCGAGACGAGACAGAGCGGGCCGGCGACGTGTTCCGGTGTTCGTGTGGCTACGAGGGACACGCCGACCTCGGTGCCTCGCGGACGTTCCTCGAACGACAG
GCTGGCAAAGAAGTCGGGTCGATGGCACGGCCCGTGCGCCTCAAGTGGGACGACCATACGTGGTCGGAGTCGTCACGCTCTCCCGAGAGGGCAAGTCCCA
ACGAGGAGCGCACAAACCAGAGTACCGACGACGGGAAACTTGCCTCCGTGGGTACGGCATAGCCAACATCCCACCGGAGGAATCCCTCCCCTTTAGGGGT
GGGAGGATGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1299 bp | 431 aa | 264 | 1562 | + | No |
AG : TnpB
ORF sequence :
MRRTNTFAVRPLSTQDEQLLHELLDASASLWNELTYERRQNFFDGESVWDTADYRKQYVGVLGSATAQQVIRKNSEAWRSFFAAREDGEDAAPPGYWGNE
DEGRELRTFIRNDQYTLEIGERSRLEIPVGQDLKDEYGLGYQERLRLEVAGNPKWEGEQGRLELYYDEVEDTFRAIQPVTVPDSRRDSPLAEESAALDVG
ANNLVACTTTTGQQYLYEGRDLFVRFRETTEEIARLQSKLREGRYSSRRIRRLYRKRTRRRDHAQDTLVRDLMERLYDEGVATVYVGHLNDVLSEHWSAR
VNEKTHQFWAYRSFIDRLATTAEEYGITVEIESEAYTTAECPVCGERDETERAGDVFRCSCGYEGHADLGASRTFLERQAGKEVGSMARPVRLKWDDHTW
SESSRSPERASPNEERTNQSTDDGKLASVGTA
DEGRELRTFIRNDQYTLEIGERSRLEIPVGQDLKDEYGLGYQERLRLEVAGNPKWEGEQGRLELYYDEVEDTFRAIQPVTVPDSRRDSPLAEESAALDVG
ANNLVACTTTTGQQYLYEGRDLFVRFRETTEEIARLQSKLREGRYSSRRIRRLYRKRTRRRDHAQDTLVRDLMERLYDEGVATVYVGHLNDVLSEHWSAR
VNEKTHQFWAYRSFIDRLATTAEEYGITVEIESEAYTTAECPVCGERDETERAGDVFRCSCGYEGHADLGASRTFLERQAGKEVGSMARPVRLKWDDHTW
SESSRSPERASPNEERTNQSTDDGKLASVGTA
Blast result :
Comments
ISNpe11 is 54% (ORFB) aa similar to ISNph17.
References
1] F. Pfeiffer (2013) Direct submission.
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank.
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank.