ISNpe13
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003372 | ND | Natrinema pellirubrum | Natrinema pellirubrum DSM 15624 Natrinema pellirubrum DSM 15624 plasmid pNATPE01 |
DNA section
IS Length : 1160 bp
Ends
IR Length : 17/22
IRL : GTGATTCGGGAAAGTTATTGAGTAGAAGTATCTCTTTAGTGTAGTGACTG
IRR : GTGATTAGCAAATCTTATTGAGAAATCCACTGAGGTGATTGTCAATCCAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTCTTGACCGTA | TA | TCGGTCAGAACG | 2 |
CGCCGTCGAGCA | TA | GGCTCGACGAGC | 2 |
CGAAAGAGCGCG | TA | CGCGCTCTTTCG | 2 |
CTCCTCCGGCTA | TA | AAGCCGGAGGAA | 2 |
CCACGCCGAGTT | TA | TCCTCGGCGTGG | 2 |
GAGCGCGTCGTA | TA | CGCGTCTTCCGG | 2 |
CCACGCCGAGTT | TA | TCCTCGGCGTGC | 2 |
DNA sequence
GTGATTCGGGAAAGTTATTGAGTAGAAGTATCTCTTTAGTGTAGTGACTGGTCGAGAGAAGAAAATCGTGCGACACCTGAGTGAAGAAGATCTGGATCGT
CTTCTCGGCGAGGCAGACGATCAGAAGGAATTCGAACGCCTCGTGTTCATCAAACGGCTGTACAAGGGTGCCACGCTGAAGGAAGCCGCCGACGACGTCG
GGAAATCTGAGGGCACCGCCACGAACTGGGTTAACCGCTGGAACGAAGGAGGTCTCGGCAAACTCACTCCGAACTTCGGGGGCGGTCGGCCCCCGAAGCT
CGACGAAGACCAACAAGACGAACTCATCGATCGACTACGTGAGGGACAACCGTGGAAAAAACAGGAGATTCAGCACCTTCTCGACGAGGAGTTCGACGTC
GAATATCATCCACACTACCTCCCAACGTTCCTACACAATCTCGGCCTTTCCTACGCCATTCCTCGGACAAAACGGCCTGATCGACCCGACAACGCCGAAG
AGATCCTCGACGAACGCGTTGAGTACGCGTTCGACGAGGATGCTCACGACCAGCCACATAATAAGCGCGAGAGTGACGACGATGACGACGAAGAGAAGTG
GCGTACCGATGAGGATATCTGCACTGATGGCGGGACTGTGGTGGGATTTTTCGATGTCTCGCATCCACAACCATGGGACAACTCTCAGCGACTGTATACG
GTCGATGAACCACATATCACTCGGCCGCTGGTGAAAATCGATACACCAGCGGCCGGGTTCTATGCGCTCAACGGAGAGAGCGTGCTGTCGTTCCCACCGA
ACCAGGAGAAAGAACAAATCTGTGGGTGTTTCGAGGAGATCCGCGAGCAGAATCCCGGCAAGCGGATTCTGCTCGTGTTGGATAACTTTTCGTCACACGT
CTGCAAGCACACGCGCAAGCGTGCTCATGAACTCGGGATTGATCTGGTGTTCCTTCCGGTTGGTTCCCCGGACCTCAACCCAATCGAACCTGTCTGGAAG
AGTCTCAAGTGGGAGTCTTCGCCGTTGATTGTTAACGGCGAAGACGAGTACCGGAGACTCCTTGACGAACTGTTCGACCAACTGACCGAGAAACTGAGTT
TCGCTGCATCGTGGATTGACAATCACCTCAGTGGATTTCTCAATAAGATTTGCTAATCAC
CTTCTCGGCGAGGCAGACGATCAGAAGGAATTCGAACGCCTCGTGTTCATCAAACGGCTGTACAAGGGTGCCACGCTGAAGGAAGCCGCCGACGACGTCG
GGAAATCTGAGGGCACCGCCACGAACTGGGTTAACCGCTGGAACGAAGGAGGTCTCGGCAAACTCACTCCGAACTTCGGGGGCGGTCGGCCCCCGAAGCT
CGACGAAGACCAACAAGACGAACTCATCGATCGACTACGTGAGGGACAACCGTGGAAAAAACAGGAGATTCAGCACCTTCTCGACGAGGAGTTCGACGTC
GAATATCATCCACACTACCTCCCAACGTTCCTACACAATCTCGGCCTTTCCTACGCCATTCCTCGGACAAAACGGCCTGATCGACCCGACAACGCCGAAG
AGATCCTCGACGAACGCGTTGAGTACGCGTTCGACGAGGATGCTCACGACCAGCCACATAATAAGCGCGAGAGTGACGACGATGACGACGAAGAGAAGTG
GCGTACCGATGAGGATATCTGCACTGATGGCGGGACTGTGGTGGGATTTTTCGATGTCTCGCATCCACAACCATGGGACAACTCTCAGCGACTGTATACG
GTCGATGAACCACATATCACTCGGCCGCTGGTGAAAATCGATACACCAGCGGCCGGGTTCTATGCGCTCAACGGAGAGAGCGTGCTGTCGTTCCCACCGA
ACCAGGAGAAAGAACAAATCTGTGGGTGTTTCGAGGAGATCCGCGAGCAGAATCCCGGCAAGCGGATTCTGCTCGTGTTGGATAACTTTTCGTCACACGT
CTGCAAGCACACGCGCAAGCGTGCTCATGAACTCGGGATTGATCTGGTGTTCCTTCCGGTTGGTTCCCCGGACCTCAACCCAATCGAACCTGTCTGGAAG
AGTCTCAAGTGGGAGTCTTCGCCGTTGATTGTTAACGGCGAAGACGAGTACCGGAGACTCCTTGACGAACTGTTCGACCAACTGACCGAGAAACTGAGTT
TCGCTGCATCGTGGATTGACAATCACCTCAGTGGATTTCTCAATAAGATTTGCTAATCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1114 bp | 370 aa | 44 | 1157 | + | No |
Chemistry : DDE
ORF sequence :
MTGREKKIVRHLSEEDLDRLLGEADDQKEFERLVFIKRLYKGATLKEAADDVGKSEGTATNWVNRWNEGGLGKLTPNFGGGRPPKLDEDQQDELIDRLRE
GQPWKKQEIQHLLDEEFDVEYHPHYLPTFLHNLGLSYAIPRTKRPDRPDNAEEILDERVEYAFDEDAHDQPHNKRESDDDDDEEKWRTDEDICTDGGTVV
GFFDVSHPQPWDNSQRLYTVDEPHITRPLVKIDTPAAGFYALNGESVLSFPPNQEKEQICGCFEEIREQNPGKRILLVLDNFSSHVCKHTRKRAHELGID
LVFLPVGSPDLNPIEPVWKSLKWESSPLIVNGEDEYRRLLDELFDQLTEKLSFAASWIDNHLSGFLNKIC
GQPWKKQEIQHLLDEEFDVEYHPHYLPTFLHNLGLSYAIPRTKRPDRPDNAEEILDERVEYAFDEDAHDQPHNKRESDDDDDEEKWRTDEDICTDGGTVV
GFFDVSHPQPWDNSQRLYTVDEPHITRPLVKIDTPAAGFYALNGESVLSFPPNQEKEQICGCFEEIREQNPGKRILLVLDNFSSHVCKHTRKRAHELGID
LVFLPVGSPDLNPIEPVWKSLKWESSPLIVNGEDEYRRLLDELFDQLTEKLSFAASWIDNHLSGFLNKIC
Blast result :
Comments
ISNpe13 is 84% aa similar to ISHvo8.
References
1] F. Pfeiffer (2013) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank.
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank.