ISNpe13

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003372 ND Natrinema pellirubrum
Natrinema pellirubrum DSM 15624
Natrinema pellirubrum DSM 15624 plasmid pNATPE01
DNA section
IS Length : 1160 bp

Ends


IR Length : 17/22

IRL : GTGATTCGGGAAAGTTATTGAGTAGAAGTATCTCTTTAGTGTAGTGACTG
IRR : GTGATTAGCAAATCTTATTGAGAAATCCACTGAGGTGATTGTCAATCCAC

Insertion site


Left flankDirect repeatRight flankDR Length
TTCTTGACCGTATATCGGTCAGAACG2
CGCCGTCGAGCATAGGCTCGACGAGC2
CGAAAGAGCGCGTACGCGCTCTTTCG2
CTCCTCCGGCTATAAAGCCGGAGGAA2
CCACGCCGAGTTTATCCTCGGCGTGG2
GAGCGCGTCGTATACGCGTCTTCCGG2
CCACGCCGAGTTTATCCTCGGCGTGC2

DNA sequence

GTGATTCGGGAAAGTTATTGAGTAGAAGTATCTCTTTAGTGTAGTGACTGGTCGAGAGAAGAAAATCGTGCGACACCTGAGTGAAGAAGATCTGGATCGT
CTTCTCGGCGAGGCAGACGATCAGAAGGAATTCGAACGCCTCGTGTTCATCAAACGGCTGTACAAGGGTGCCACGCTGAAGGAAGCCGCCGACGACGTCG
GGAAATCTGAGGGCACCGCCACGAACTGGGTTAACCGCTGGAACGAAGGAGGTCTCGGCAAACTCACTCCGAACTTCGGGGGCGGTCGGCCCCCGAAGCT
CGACGAAGACCAACAAGACGAACTCATCGATCGACTACGTGAGGGACAACCGTGGAAAAAACAGGAGATTCAGCACCTTCTCGACGAGGAGTTCGACGTC
GAATATCATCCACACTACCTCCCAACGTTCCTACACAATCTCGGCCTTTCCTACGCCATTCCTCGGACAAAACGGCCTGATCGACCCGACAACGCCGAAG
AGATCCTCGACGAACGCGTTGAGTACGCGTTCGACGAGGATGCTCACGACCAGCCACATAATAAGCGCGAGAGTGACGACGATGACGACGAAGAGAAGTG
GCGTACCGATGAGGATATCTGCACTGATGGCGGGACTGTGGTGGGATTTTTCGATGTCTCGCATCCACAACCATGGGACAACTCTCAGCGACTGTATACG
GTCGATGAACCACATATCACTCGGCCGCTGGTGAAAATCGATACACCAGCGGCCGGGTTCTATGCGCTCAACGGAGAGAGCGTGCTGTCGTTCCCACCGA
ACCAGGAGAAAGAACAAATCTGTGGGTGTTTCGAGGAGATCCGCGAGCAGAATCCCGGCAAGCGGATTCTGCTCGTGTTGGATAACTTTTCGTCACACGT
CTGCAAGCACACGCGCAAGCGTGCTCATGAACTCGGGATTGATCTGGTGTTCCTTCCGGTTGGTTCCCCGGACCTCAACCCAATCGAACCTGTCTGGAAG
AGTCTCAAGTGGGAGTCTTCGCCGTTGATTGTTAACGGCGAAGACGAGTACCGGAGACTCCTTGACGAACTGTTCGACCAACTGACCGAGAAACTGAGTT
TCGCTGCATCGTGGATTGACAATCACCTCAGTGGATTTCTCAATAAGATTTGCTAATCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1114 bp370 aa441157+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTGREKKIVRHLSEEDLDRLLGEADDQKEFERLVFIKRLYKGATLKEAADDVGKSEGTATNWVNRWNEGGLGKLTPNFGGGRPPKLDEDQQDELIDRLRE
GQPWKKQEIQHLLDEEFDVEYHPHYLPTFLHNLGLSYAIPRTKRPDRPDNAEEILDERVEYAFDEDAHDQPHNKRESDDDDDEEKWRTDEDICTDGGTVV
GFFDVSHPQPWDNSQRLYTVDEPHITRPLVKIDTPAAGFYALNGESVLSFPPNQEKEQICGCFEEIREQNPGKRILLVLDNFSSHVCKHTRKRAHELGID
LVFLPVGSPDLNPIEPVWKSLKWESSPLIVNGEDEYRRLLDELFDQLTEKLSFAASWIDNHLSGFLNKIC

 

Blast result :
Comments
ISNpe13 is 84% aa similar to ISHvo8.
References
1] F. Pfeiffer (2013) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T. (2012) Direct submission GenBank.