ISHla12
- Family IS1595
- Group ISH4
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP001367 | ND | Halorubrum lacusprofundi | Halorubrum lacusprofundi ATCC 49239 plasmid pHLAC01 |
DNA section
IS Length : 1046 bp
Ends
IR Length : 27/35
IRL : CGCTCTTATGTCGAAACGTGGAAAGCCCCTATAGCTACGGTCTACGGCCG
IRR : CGCTCTTATGTAGAGCTGTGGAGTCCCCCTACAGCAAGGCAGTCGACGAG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CTGTGTTGGTTA | ACACGAGA | GTAGCCGATGTC | 8 |
DNA sequence
CGCTCTTATGTCGAAACGTGGAAAGCCCCTATAGCTACGGTCTACGGCCGCAAATGAGGTGATATGCCCTCCTCAGATCCAGCCTTCGGCCGGATGCTTC
GCCAGCTCGTCGATCTTGGTGTACTCAAACTAGAGACGGAACCGCTCGATGCGGCCATCGAGCGGCGACTCAAGCAGTTCTGGAAGAGTACGACGTGTCC
ACAGTGCGGCAATCCAACCATCCGCACCTGGAAATCATCCGACCGAATACACTGCCGCAGTTGCCAGTTTAAGCCCGTCTATACCTACGGAACACCGTTT
CACGAGAAACACCTCTCCACAGGAGAGGTGCTTCTCTCGTTCATGCTCTACGCAGATACCTTGCTCAGTATCTCACAGATCGCCGTTGTGCTGGATCGAG
CGTACAAGACGGTCTTCTACGCGATCAAAGAGGTGGAAGCCGCGGTTCACCGTGGCTTCCCCCTCGTCTGGAGTCAATTCCAGCACACAATCTCTGGGCC
AACGCAGATCGACGAATCTGGGAAGGTCTGTTCGGGGTTCAAAGGCCAAGACCCGCCGCGAGACAGCCGTCATCGCGGCGGGTCGTCCCGATCTGGTCGG
ACACGCTGGAAGGGGCGTCACGGCGATCAATTAACGCTCGTCGCGGCCTGCCGCGACGCGCTCAGAGTAATTCGTGGGAGGCTCGGAATCGCCTACGACA
CTGATTTAGAGCCGGTGATGGAGGAAACTGCCGACCTCTCCCAGCCGCTGGGAGAGGTCTGGACAGACGGTCTCCAAGCCTATCGCCGGATGGAACACGA
CCACAAGATCGTGATTCACGACGAGACGTACGTCTCGTCAGAAGGAATCCACATCAACCAGGTTGAGTGCCTCTTTTCACTTGTCAAGCCGTGGCTGCGG
AAGTTCCGCGGCCTCTCCAAGCACGGCTTGGAGCAGGCCGCTCATACTTTCGGCATCGTCCGCTCAGTGAATCTCGTCGGCGCATCGTTCGAATTCCTCG
TCGACTGCCTTGCTGTAGGGGGACTCCACAGCTCTACATAAGAGCG
GCCAGCTCGTCGATCTTGGTGTACTCAAACTAGAGACGGAACCGCTCGATGCGGCCATCGAGCGGCGACTCAAGCAGTTCTGGAAGAGTACGACGTGTCC
ACAGTGCGGCAATCCAACCATCCGCACCTGGAAATCATCCGACCGAATACACTGCCGCAGTTGCCAGTTTAAGCCCGTCTATACCTACGGAACACCGTTT
CACGAGAAACACCTCTCCACAGGAGAGGTGCTTCTCTCGTTCATGCTCTACGCAGATACCTTGCTCAGTATCTCACAGATCGCCGTTGTGCTGGATCGAG
CGTACAAGACGGTCTTCTACGCGATCAAAGAGGTGGAAGCCGCGGTTCACCGTGGCTTCCCCCTCGTCTGGAGTCAATTCCAGCACACAATCTCTGGGCC
AACGCAGATCGACGAATCTGGGAAGGTCTGTTCGGGGTTCAAAGGCCAAGACCCGCCGCGAGACAGCCGTCATCGCGGCGGGTCGTCCCGATCTGGTCGG
ACACGCTGGAAGGGGCGTCACGGCGATCAATTAACGCTCGTCGCGGCCTGCCGCGACGCGCTCAGAGTAATTCGTGGGAGGCTCGGAATCGCCTACGACA
CTGATTTAGAGCCGGTGATGGAGGAAACTGCCGACCTCTCCCAGCCGCTGGGAGAGGTCTGGACAGACGGTCTCCAAGCCTATCGCCGGATGGAACACGA
CCACAAGATCGTGATTCACGACGAGACGTACGTCTCGTCAGAAGGAATCCACATCAACCAGGTTGAGTGCCTCTTTTCACTTGTCAAGCCGTGGCTGCGG
AAGTTCCGCGGCCTCTCCAAGCACGGCTTGGAGCAGGCCGCTCATACTTTCGGCATCGTCCGCTCAGTGAATCTCGTCGGCGCATCGTTCGAATTCCTCG
TCGACTGCCTTGCTGTAGGGGGACTCCACAGCTCTACATAAGAGCG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 978 bp | 325 aa | 64 | 1041 | + | No |
Chemistry : DDE
ORF sequence :
MPSSDPAFGRMLRQLVDLGVLKLETEPLDAAIERRLKQFWKSTTCPQCGNPTIRTWKSSDRIHCRSCQFKPVYTYGTPFHEKHLSTGEVLLSFMLYADTL
LSISQIAVVLDRAYKTVFYAIKEVEAAVHRGFPLVWSQFQHTISGPTQIDESGKVCSGFKGQDPPRDSRHRGGSSRSGRTRWKGRHGDQLTLVAACRDAL
RVIRGRLGIAYDTDLEPVMEETADLSQPLGEVWTDGLQAYRRMEHDHKIVIHDETYVSSEGIHINQVECLFSLVKPWLRKFRGLSKHGLEQAAHTFGIVR
SVNLVGASFEFLVDCLAVGGLHSST
LSISQIAVVLDRAYKTVFYAIKEVEAAVHRGFPLVWSQFQHTISGPTQIDESGKVCSGFKGQDPPRDSRHRGGSSRSGRTRWKGRHGDQLTLVAACRDAL
RVIRGRLGIAYDTDLEPVMEETADLSQPLGEVWTDGLQAYRRMEHDHKIVIHDETYVSSEGIHINQVECLFSLVKPWLRKFRGLSKHGLEQAAHTFGIVR
SVNLVGASFEFLVDCLAVGGLHSST
Blast result :
Comments
ISHla12 is 90% aa similar to ISHvo6.
References
1] F. Pfeiffer (2013) Direct submission
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Anderson,I., DasSarma,S., Cavicchioli,R. and Richardson,P. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Anderson,I., DasSarma,S., Cavicchioli,R. and Richardson,P. (2009) Direct submission GenBank.