ISSm4
- Family ISL3
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| ND | Serratia marcescens | Serratia marcescens |
DNA section
IS Length : 9109 bp
Ends
IR Length : 19/22
IRL : GGCTATTTGCATCCTAGGGTTGAATCGGCGATATCCCAAAAAATAGACAT
IRR : GGCTATTTGCAATCTATGGTTGGAACACTCTGATTTTCAATCAAAGTCGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|
DNA sequence
GGCTATTTGCATCCTAGGGTTGAATCGGCGATATCCCAAAAAATAGACATTAGTCAGTTTTGTGCAATACGCGGTTGATTTGTCCTGCAACCATGATAGT
CTGTTTTATGCAAACTATGGTTGGAGAACCGCATGGCAGAACATACAGGCTCAGGCGCATCACTGGCAGATTTCATCTGGAAAAATGCTGAAGACCTTTG
GGGTGATTTCAAGCACACCGACTTTGGCAAAATCATATTGCCGTTCACGCTGCTGCGCCGCCTTGAGTGCGTTTTGGAGCCGACCCGCAAGGAAGTCTGT
GACTCTCATGCTGCTCATAAGGCATCCGGGATCGACATTGACCTGATCCTGCGTCAAGCCACTCGCTACCCGTTCTACAACACATCTGAATACGCGCTGG
GTAATTTGGGCAGCACCAAGACCCGCCAGAACCTCCAAGACTACATCGCCCACTTCTCCGACAATGCTCGGATTATCTTCGAGCAATTCGATTTCTCGAA
TACTGTTATCCGGCTCGACAAGGCCGGTGTGCTATTCAAGATTTGCAAGAATTTTGCAGGCGTTGATCTTCATCCAGAGGTCGTATCGGATCGGGTCATG
AGCAATCTGTACGAACACCTCATTCGCCGCTTTGGTGCTGAGGTGAATGAAGGGGCTGAGGACTTCATGACGCCCCGCGATGTGGTGCATCTGGCCACGG
CTCTGCTTCTTGATCCCGATGATGCGCTCTTCGAGTCCAATCCCGGTTTGATCCGCACCCTGTATGACCCGACCTGTGGCACAGGCGGCTTCCTGACCGA
TGCCATGAACCACGTCGCTGAATACAGCAATCGCTTCAAAGTTCCGCCTGTGCTTGTTCCGCACGGACAAGAGCTTGAGCCTGAAACTCATGCCGTCTGC
CTGACCAGCATGTTGCTTCGCACGCTGGAATCTGATCCTGGCCGCGACCTGTCGAAGAATATCCGGCTGGGCAGCACTCTCTCCAATGACCAGTTCGCCA
ACGAGCGTTTCCATTACTGCCTCTCGAATCCTCCTTTTGGCAAGAAATGGGAGAAAGATTCCGACGTCGTAAACACCGAGCACAAAGAAAAGAAATACGA
CGGTCGTTTTGGCCCAGGCCTGCCGCGCATCAACGACGGCTCCATGCTGTTCCTGCTGCACCTAGCCAGCAAGCTGGAGTTGCCGGAGAACGGCGGTGGC
CGCGCCGCTATCGTGTTGTCCGGTTCGCCCTTGTTTAATGGTGGCGCATCGTCAGGAGAATCTGAAATTCGTCGCTGGCTGCTTGAAAACGATCTGGTTG
AAGCCATCGTGGCGCTGCCCACGGAAATCTTCTTCCGCACAGGCATCGGCACTTACCTCTGGATCCTCTCGAACAAAAAGGCTGCGCACCGGGAAAAGAA
GGTGCAACTGATCAATGCCACAAGTTTCTGGTCGTCGATCAAGAACGAAGGCAACAAGCGCCGCAGCGTTGATGATGATCATCGCAGCCAAATCGTCGAC
ATCTATGCCGCTGCCGAGAACAGCGAAGTCTCCCGGATGATCGATTACCGCAGCTTTGGCTATCGCCGCATCAAGGTCTTGCGTCCGCTGCGCATGTCGC
TGGTCATCGACGACAAAGGGCTGGCCAAGCTGCAAGACGAAAAGGCGTGGCAAAAGTTATCGGCAGAGCACCAACAAATCTGGCTGGACGCATTGCATCT
GCACTTGGGCACGACCCAACTCGTTGGTTGGGCAGAAACCTTCGCCGATGAAATGGTGCGTTCGGTGCTGGCTGCTGGCACGGTTATCAAGGCAGGCAAA
CCCTTCGTGAAATCCTTGGTGAATTCATTTGGTCAGCGCGTTCCGCAGGGTGAGGCGGTACTCGATGCGAATGGTGTAGTGATCTCCGATCCTGAACTGA
CCGACTACGAGAATGTGCCGCTGACCGAAGACATCCGCGACTACCTTGCTCGTGAGGTGCTGCCACATCTGCCGGATGCCTATATTGATGAGTCCTTTTG
CGACGAGAAGGACAAGAAAGTTGGCCGCGTGGGTTACGAAATCAACTTCAACCGCTTCTTCTACAAATATGTGCCGCCGCGCAAGCTGAATGACATCGAT
GCCGAACTGAAACAGGTTGAGTCGGAGATTGCCGCACTTCTCGCTGAGGTAGCCACAGAATGAGCCAATTAACCCACGCACCGGACGCTCTCCTGTCAGA
AATCCGTGGCTTGATAGACGATGCCAGGCGGCAAGTTGCCCAGATCGCCAACAGCGCCTTGACGCTTACCTACTGGAAAATCGGCAAGCGAATTGGCGTT
GAAATTCTTGGCGGTGAGCGTGCTGCCTACGGTAGCCAGATTGTCGTATCGCTGGCACGACAATTGGAGCAGGACTACGGCAACGGTTTTGGAGAGAAAA
ATCTCCGCAGAATGATCCAGTTCGCCGAAGTGTTCCCCGATGAAGGGATTGTCGTATCGCTGATACGAGAATTGACCTGGACGCACTTCATTGCCTTATT
GCCGCTGAAAGACCCGCTCGCCCGCGAGTTCTACGCCGAAATGTGCCGTGTGGAGCGCTGGAGTGTTCGTACCTTGCGGCAGAAGATCAACGGCATGCTT
TTCGAGCGCACGGTCCTGTCGAAAAACAGCGAGGAAGTTGTCCGACAGGAATTGGCCACCTTGCGCGACGGGCAGATGACGCCGGATATGGTGTTCCGTG
ATCCATATCTGCTCGATTTCCTTGGCCTCTCTGGCGCTTACAGCGAAAAAGACTTGGAGGCGGCCATCCTGCGCGAAATGGAGTCCTTCCTGCTCGAAAT
GGGCAGCGGATTCTGTTTTGTTGAACGGCAAAAGCGCATGAGCGTCGGCGGAGATGATTTTTACCTCGACCTCCTGTTCTATCACCGCCATCTGCGCCGC
CTGGTGGCCATTGAACTGAAGCTGGAGAAATTCCAGCCCAGCCACAAAGGCCAGATGGAGCTTTATCTGCGCTGGCTGGACAAGCACGAACGCACTGTCG
GCGAAGAACCTCCGATTGGTCTCATTTTGTGCGCGAGTGCCGATGCCGAGCAGGTAGAACTGCTGCAACTGGATGAGGCCTCCATTCGGGTCGCGGAATA
CCTGGTCGAATTGCCGCCCGTTGCGGTACTGCGGGAGCGTCTGCATCGTGCCATCGAGCACGCACGGGAACGCACCGCCCTGGCTGCGTCGGATGGAGAG
CAAGCATGAGCCACTACAAGCCTTACCCGGCTTATAGGGATTCCAACGTGGAGTGGATCGGTCAGGTGCCGGAGCATTGGGAGATAAAGCGCCTGCGTCA
TGTTGCTTCGTTCACAAACAGCAATGTGGACAAGAAATCCTACGACGGACAAGCTGCTGTCAGCCTTTGCAACTACACCGATGTCTATTACAACGAATTC
ATCACGGCGGATTTGCCGTTTATGCAGGCAACTGCCAGCTCGTCCGAGATTGAGCAGTTCACCCTAAAAAAAGGGGATGTAATCATCACCAAGGACTCGG
AAGACCCTTCCGACATTGGTATTCCTTCCCTCGTTGCAGAAGATGTCCCTGGTGTTGTTTGTGGCTACCACCTGACCATGATTCGGACGGCCAGCGCCGA
CACGTCGCGCCTCTTGCATCGGATTCTCCAGTCGCATCCAACTCAAGCCCACTTCTTCGTGGGTGCGCCTGGTATTACTCGTTACGGTCTCGGCCAAGAT
ACGATTGGAGATGTTCGTGTCTGCCTGCCACCGCCACAAGATCAAGGCTTCATAGCTGCCTGCCTCGACCGCGAAACCGCCCGCTTCGACGCCTTGATTG
CCAAGAAAACCCGCTTCATCGAACTGCTGAAGGAAAAGCGCCAGGCGCTCATCACGCATGCCGTCACCAAGGGGCTGAACCCCAAGGCGAAGATGAAGGC
TTCTGGGGTGGAGTGGATTGGGGAGGTGCCGGAGCATTGGGTGGCAATCAAGTTTAACCATGTTGCTCGCGTGACCGAGGGATTGGTTGATCCAAAAGCC
CATCCTTACAGGGAGATGGTTTTGATTGCGCCAAACCATATTGAGTCTGGAACCGGGAAGATTCTGGGGCTGGAAACCGCCGTTTTTCAAAATGCGGAGA
GTGGGAAATACACATGCAAAAAAGGCGCAGTTATTTACTCAAAAATTCGGCCCGCGCTCGCCAAGGTCGCTATTGCTCCATGTGACTGCCTCTGTAGTGC
AGACATGTATCCAATGGATTGCACCGACCGCACATATCCAGAATGGCTTTTCTATTTGATGCTCTCGCCGCCTTTTACGTCGTGGGCAATTTTGGAGTCA
GACCGAGTGGCGATGCCAAAAATCAATCGAGAGTCATTGGCTGACCTTCGAGTGTTTTTACCGCCGATGGATGAGCAATTGGCTGCTGTTGCATGGCTTA
AGGCTCAAGTTGAAAAGCTCGAAATAGTTTCCTTGAAAACCCAGCACAGCATCGATCTTCTCAAAGAACGCCGCGCTGCCTTCATTACTGCTGCCGTCAC
CGGCCAAATCGACCTTCGGGAGTCCGCATGAGCGACACCGCACACCAAGAAAAGCACTTCGAGAGCTACATCGTTTCCAAACTGGCGGCGCAAGGTTGGA
AGGTGGGCGAAACCGCCCAATACGACACCGAACGGGCTTTGTATGCGGAGGACTTGATCGCCTGGCTGGAAGGCTCCGGCCAAGGCGAGAAGTGGGCCAA
GCTCAAGAAGGACAATGGTGATCGTGCGCTCGACATCCTGATGGATCGGCTGACCAAGGCGCTGGAAACGCATGGGGCGGTTCAAGTGCTGCGTCAAGGC
TTCTCCATTGCCGGGTGTGGGCATCTTGATCTCTCTGAAGCCGCGCCTGAAGACATGCGTAACGCCGACGTGCTGAAGCGCTATGCCGCCAATATCCTGC
GTGTGGTGCCGCAGCTTCAGTACCACCCATCACGCAAGCTGGCGATTGATCTGGTGCTGTTCATCAACGGCATTCCGGTGGCGACCGTTGAACTCAAGAC
CGACTTTACCCAGTCGGCAGAAGCGGCGATGGATCAGTACCGCACCGACCGGCTGCCCTACGACTCCAAGACCAAACGCAAGGAACCGCTGCTGACGTTT
AAGCGCGGGGCTGTCGTGCATTTTGCGATGTCTGACTCCGACATCCAGATGGCCACCAAGCTCGACGGGGAAAACACCTTCTTTCTGCCATTCAACAAGG
GAGACAAAGGCCACGCAGGCAACCCCGAGGGTGAGAGAAAGCCCGATGGCACACAGGAATATCCTGTTGCTTACTTCTGGGAGCAGGTCTGTCAGCCGGA
TGCGTGGCTGCGCATCTTCCACAGCTTCGTCTATGTCGAAAAGAAGGATGTGGTTGACCTGAAAGGCAACTGGTCGAAGAAGGAAACGCTGATCTTCCCG
CGCTTCCACCAATGGTCGGCGGTCAATGAGATGATCGCCGATGCCAAGAAAAACGGCCCCGGCTTGTCGTATCTGGCTGATCACAGCGCGGGCTCCGGCA
AGACCAGCACGATTTCATGGACGGCGCACGATCTGGTGAAATTGCGTCGTGACAATGGTGAATCGATCTTCAACAGCGTCATCATCGTGACGGATCGCAA
TGTGCTGGATGGGCAGCTTCAGGATGCGGTGAAGCAGCTCGACCATCAGTTCGGCGTGATCGCTGCGATTGATCGCCAGAAGTCCTCGAAGTCGAAGAGC
CAGCAGTTGGCGGATGCCTTGCTGGCGGGCACGCCCATTATCGTCGTGACCATTCAGACCTTCCCCTTTGCGATGGAAGCCATCGTGACGGACAAGACGC
TGAAGGGTAAAAATTTCGCGGTCATCATCGACGAAGCACATAACTCACAAACCGGCTCGACCGCCGCCAAGCTACAGACGGCGCTGGCCATGAGCGGCAA
TGGCAAGATGAGCACGCTGACGGTGGAAGAGCTGCTTGAGCAGCTTCAAAAATCGCGGGCACGTCCGGACAACATCAGCTATTTCGCCTTCACCGGCACG
CCGAAGCATTCCACGATGATGCTCTTTGGCCGACCGACCGACCCGACACAACCAGCCTCGAAAAGTAATCTTCCCCGCGCATTCCACCGCTACCCGATGC
GGCAAGCCATTGAGGAAGGCTTCATTCTGGATGTGCTGCTGGGCTACGTGCCCTACAAGACGGCGTTCAACCTCGCCAAGCAGATCGAGGATAGCAAACG
GGTGAGCGGCAAGGCAGCTAAACGGGCCTTGGCACAATGGATGTCGCTGCACCCGACCAATGTCACCCAGAAGGTGCAATTCATCATCGAGCACTTCAGC
AAGAACGTGGCGCACCGGCTCGATGGCAAGGGCAAGGCGATGGTTGTCACCAGTTCACGGGCTGCGGCGATCCGCTACAAGAAGAGCTTTGACGCCTACA
TTGCCAAACACTCGGAATATTCTGGCATTCGCTCATTGATTGCCTTCTCCGGAAAGATGACGGGCAAGCAAGTGATACACGCCGCCGACGACCGTCTGGT
TGGTGACACTTTCTTGGTGGATGAGAGCGAGGAGTTCACCGAGGACAGCATGAATCCCGAGGTGAATGGCCAAGACTTGCGCTTTGCCTTTGATCGCCCG
GAATACCGGGTAATGCTGGTAGCCGACAAGTTCCAGACAGGTTTCGACCAACCAAAATTGGTGGCAATGTACGTCGACAAGAAGATCGCCAACGATGTGG
AAATCGTCCAGACCTTCTCCCGCCTCAACCGAATGGCACCTGGCAAGGATGAGGTCTTTATCATCGACTTCGTGAATGATCCAGCCAACGTCCGCCGTGC
CTTTGCCATGTATGACGACGGGGCGCAGATTGATGATGTTCAAGACCTCAATGTAGTTTACGAGATCAAGGAACAACTCGACGCCCAAGGGTTGTACGAG
GCAAGCGACCTGGAGAGCTTCAAAGAGGCTCGTTTCAAGACCATTCGTGACATCACCCATGCGCAGGAGCCGCAGCACAAGGCTCTGTATGCTGCGACCG
AGAAACCGACGCGATTGTTCAATCAGCGTTTGAAGATGCTGCGTGAAGCGATTGCGACTTGGGAAGCCACCTTCGATAAGGCGCACACCCAAGGCGACGA
GGCGGGCATGAAGTCTGCCGATCACCACCGGCAAGAACATGCCGACCAGATCAAGACGCTGATGGCTTTCAAGTCCGGTTTAGGGCGCTTCTGCCGTACC
TACGCCTACGTGGCCCAGTTGATCGACTTTGGTGACCCGGAGCTGGAGAACTTCGCGGCCTTCGCCAGGCTGCTGCAAAAACGCTTGAGTGGCGAAACGC
CGGAGAACGTCGACTTGAAAGGGTTGGTGCTCACGGGCTTCGACATCAAGGGCAAAGAGGACGACCCCTCTGAGGGTGACGATCCGCTGGTTCTAAAACC
GATCGGCGCTGGCGGTGGCGGCGGCAAGGGCGACAACCCGCACTTCCTGCGCGAGCTTATCGACAAACTCAATCATCTGTTTGGCGATGCCACACCGTTG
CGCGATCAGGCCACTTTCGTTAATCACATCGTTGCGATTGCCCGTGAGAATGATGTCGTGATGGCCCAAATCGAAAACAACACGCGAGATCAGGCGCTGA
AAGGCAATCTGCCGGGCGCTGTCCAGCAGGGCGTTGTGCGGGCGCTGACCTCGCATCAAAAGCTTGCCACGTTGGTTCTAAAGTCGGATCGTCAGGCGAT
GGCTGGATTAACTGATGTAATTTATGAGCTGATCCGCGACCAGAAGAACATTGACCTGGGTGATCTAAATGTTTGATCTGCTCAACTTGCCTGGCGTAAA
GCCAGTCGACCTGCGCATAGGCAGTAAAGGCATCACTGTCATTGCAGAGGTCGTTGAGGGAGACTTGCCGCAATGCCCTGACTGCGCAAAACCGCTGCAT
CGGCATGGGCGACGCGCAAACGTGTTTGCTGACACGCCAATGCAGATGCAGCCCGTTCGATTGGAAATCAGCCGCCCGCGTTACCGCTGCGACACATGTG
GCAAAACCGTCACGCCGGAACTGCCATTTCTGGACGAAAAGCGCCGTGCTACAAAACGTCTGGTCGATGCCATTCGCCAGCGCTGCCTTGGCATGACCTT
CCACGCCCTTGCGGAACAGACGGGCCTAGCGGTAAACACGATCAAGAACATAGCTCATGACTTGATTGAAGAGCTGGAAAGCACCGTTCGCTATGAGACG
CCAGTCATCATGGGCATTGACGAGGTTAGCTTGGCTGGTGCCTACCGCTGCGTCATCACAAACCTTGCCACTAATAACGTCTTTCAAATATTGGAGTTTC
GTACTCAAGACCATCTGAAACCGTTCTTCGAAAACTTGCCGAACAAGGATCGGGTTGAATGGGTTTGTACGGACATGTGGCGTCCCTTCAAACGCTCATT
CAGCCAATATTTGCCGAATGCAAAGCTGGTCATCGACAAGTTTCATGTCGTGAAAATGGCATCCGAAGCCTTGGAGGAAGAGAGAAAGAAGTATCAATCC
ACGCTGACCAAGGATGAACGCATCCAAGTAAAAAAGTCGATCCGTTGGCTTGTACTGAAGCGGCCAGACAACCTTAGCCCCGCAGAGCAGAAAGCGCTGC
TGATTGTTCGACAGACAATTCCCGGCTTGGCTCAGGCCTATGACTTCAAGGAATCTTTTTTTAAGATTTACGACGAACCGGACAAAAAGGCTGCAATGCT
CGCCTTTGAGGCATGGGAAAACAGTTTGCCTGAGAAGGAAATGGAGAAGTTTCATGGTCTTGCCAAGACTGTGCATAACCACTATGACGACATCTTCGCT
TATTGGGATTCGCCCAATCGAATAACAAATGCCTACACAGAATGCCTGAACGGACTGATCAAGGTCTCCAATCGGTTGGGGCGTGGGTACAGCTACGACA
TCATTCGGGCCAAAACGCTGTATGCAAAACACGCCCGTAAAGTGGGAAGCGGAGTACGTCTGACAGCCCCTTCAGTGACAGCAATTCCAACCAAGAGTGT
GTCTGAAACGGTTGAGTACGGACCTCACATTCCAACCTTGATCGAGAACGCCGAAGCTGGCGACTTTGATTGAAAATCAGAGTGTTCCAACCATAGATTG
CAAATAGCC
CTGTTTTATGCAAACTATGGTTGGAGAACCGCATGGCAGAACATACAGGCTCAGGCGCATCACTGGCAGATTTCATCTGGAAAAATGCTGAAGACCTTTG
GGGTGATTTCAAGCACACCGACTTTGGCAAAATCATATTGCCGTTCACGCTGCTGCGCCGCCTTGAGTGCGTTTTGGAGCCGACCCGCAAGGAAGTCTGT
GACTCTCATGCTGCTCATAAGGCATCCGGGATCGACATTGACCTGATCCTGCGTCAAGCCACTCGCTACCCGTTCTACAACACATCTGAATACGCGCTGG
GTAATTTGGGCAGCACCAAGACCCGCCAGAACCTCCAAGACTACATCGCCCACTTCTCCGACAATGCTCGGATTATCTTCGAGCAATTCGATTTCTCGAA
TACTGTTATCCGGCTCGACAAGGCCGGTGTGCTATTCAAGATTTGCAAGAATTTTGCAGGCGTTGATCTTCATCCAGAGGTCGTATCGGATCGGGTCATG
AGCAATCTGTACGAACACCTCATTCGCCGCTTTGGTGCTGAGGTGAATGAAGGGGCTGAGGACTTCATGACGCCCCGCGATGTGGTGCATCTGGCCACGG
CTCTGCTTCTTGATCCCGATGATGCGCTCTTCGAGTCCAATCCCGGTTTGATCCGCACCCTGTATGACCCGACCTGTGGCACAGGCGGCTTCCTGACCGA
TGCCATGAACCACGTCGCTGAATACAGCAATCGCTTCAAAGTTCCGCCTGTGCTTGTTCCGCACGGACAAGAGCTTGAGCCTGAAACTCATGCCGTCTGC
CTGACCAGCATGTTGCTTCGCACGCTGGAATCTGATCCTGGCCGCGACCTGTCGAAGAATATCCGGCTGGGCAGCACTCTCTCCAATGACCAGTTCGCCA
ACGAGCGTTTCCATTACTGCCTCTCGAATCCTCCTTTTGGCAAGAAATGGGAGAAAGATTCCGACGTCGTAAACACCGAGCACAAAGAAAAGAAATACGA
CGGTCGTTTTGGCCCAGGCCTGCCGCGCATCAACGACGGCTCCATGCTGTTCCTGCTGCACCTAGCCAGCAAGCTGGAGTTGCCGGAGAACGGCGGTGGC
CGCGCCGCTATCGTGTTGTCCGGTTCGCCCTTGTTTAATGGTGGCGCATCGTCAGGAGAATCTGAAATTCGTCGCTGGCTGCTTGAAAACGATCTGGTTG
AAGCCATCGTGGCGCTGCCCACGGAAATCTTCTTCCGCACAGGCATCGGCACTTACCTCTGGATCCTCTCGAACAAAAAGGCTGCGCACCGGGAAAAGAA
GGTGCAACTGATCAATGCCACAAGTTTCTGGTCGTCGATCAAGAACGAAGGCAACAAGCGCCGCAGCGTTGATGATGATCATCGCAGCCAAATCGTCGAC
ATCTATGCCGCTGCCGAGAACAGCGAAGTCTCCCGGATGATCGATTACCGCAGCTTTGGCTATCGCCGCATCAAGGTCTTGCGTCCGCTGCGCATGTCGC
TGGTCATCGACGACAAAGGGCTGGCCAAGCTGCAAGACGAAAAGGCGTGGCAAAAGTTATCGGCAGAGCACCAACAAATCTGGCTGGACGCATTGCATCT
GCACTTGGGCACGACCCAACTCGTTGGTTGGGCAGAAACCTTCGCCGATGAAATGGTGCGTTCGGTGCTGGCTGCTGGCACGGTTATCAAGGCAGGCAAA
CCCTTCGTGAAATCCTTGGTGAATTCATTTGGTCAGCGCGTTCCGCAGGGTGAGGCGGTACTCGATGCGAATGGTGTAGTGATCTCCGATCCTGAACTGA
CCGACTACGAGAATGTGCCGCTGACCGAAGACATCCGCGACTACCTTGCTCGTGAGGTGCTGCCACATCTGCCGGATGCCTATATTGATGAGTCCTTTTG
CGACGAGAAGGACAAGAAAGTTGGCCGCGTGGGTTACGAAATCAACTTCAACCGCTTCTTCTACAAATATGTGCCGCCGCGCAAGCTGAATGACATCGAT
GCCGAACTGAAACAGGTTGAGTCGGAGATTGCCGCACTTCTCGCTGAGGTAGCCACAGAATGAGCCAATTAACCCACGCACCGGACGCTCTCCTGTCAGA
AATCCGTGGCTTGATAGACGATGCCAGGCGGCAAGTTGCCCAGATCGCCAACAGCGCCTTGACGCTTACCTACTGGAAAATCGGCAAGCGAATTGGCGTT
GAAATTCTTGGCGGTGAGCGTGCTGCCTACGGTAGCCAGATTGTCGTATCGCTGGCACGACAATTGGAGCAGGACTACGGCAACGGTTTTGGAGAGAAAA
ATCTCCGCAGAATGATCCAGTTCGCCGAAGTGTTCCCCGATGAAGGGATTGTCGTATCGCTGATACGAGAATTGACCTGGACGCACTTCATTGCCTTATT
GCCGCTGAAAGACCCGCTCGCCCGCGAGTTCTACGCCGAAATGTGCCGTGTGGAGCGCTGGAGTGTTCGTACCTTGCGGCAGAAGATCAACGGCATGCTT
TTCGAGCGCACGGTCCTGTCGAAAAACAGCGAGGAAGTTGTCCGACAGGAATTGGCCACCTTGCGCGACGGGCAGATGACGCCGGATATGGTGTTCCGTG
ATCCATATCTGCTCGATTTCCTTGGCCTCTCTGGCGCTTACAGCGAAAAAGACTTGGAGGCGGCCATCCTGCGCGAAATGGAGTCCTTCCTGCTCGAAAT
GGGCAGCGGATTCTGTTTTGTTGAACGGCAAAAGCGCATGAGCGTCGGCGGAGATGATTTTTACCTCGACCTCCTGTTCTATCACCGCCATCTGCGCCGC
CTGGTGGCCATTGAACTGAAGCTGGAGAAATTCCAGCCCAGCCACAAAGGCCAGATGGAGCTTTATCTGCGCTGGCTGGACAAGCACGAACGCACTGTCG
GCGAAGAACCTCCGATTGGTCTCATTTTGTGCGCGAGTGCCGATGCCGAGCAGGTAGAACTGCTGCAACTGGATGAGGCCTCCATTCGGGTCGCGGAATA
CCTGGTCGAATTGCCGCCCGTTGCGGTACTGCGGGAGCGTCTGCATCGTGCCATCGAGCACGCACGGGAACGCACCGCCCTGGCTGCGTCGGATGGAGAG
CAAGCATGAGCCACTACAAGCCTTACCCGGCTTATAGGGATTCCAACGTGGAGTGGATCGGTCAGGTGCCGGAGCATTGGGAGATAAAGCGCCTGCGTCA
TGTTGCTTCGTTCACAAACAGCAATGTGGACAAGAAATCCTACGACGGACAAGCTGCTGTCAGCCTTTGCAACTACACCGATGTCTATTACAACGAATTC
ATCACGGCGGATTTGCCGTTTATGCAGGCAACTGCCAGCTCGTCCGAGATTGAGCAGTTCACCCTAAAAAAAGGGGATGTAATCATCACCAAGGACTCGG
AAGACCCTTCCGACATTGGTATTCCTTCCCTCGTTGCAGAAGATGTCCCTGGTGTTGTTTGTGGCTACCACCTGACCATGATTCGGACGGCCAGCGCCGA
CACGTCGCGCCTCTTGCATCGGATTCTCCAGTCGCATCCAACTCAAGCCCACTTCTTCGTGGGTGCGCCTGGTATTACTCGTTACGGTCTCGGCCAAGAT
ACGATTGGAGATGTTCGTGTCTGCCTGCCACCGCCACAAGATCAAGGCTTCATAGCTGCCTGCCTCGACCGCGAAACCGCCCGCTTCGACGCCTTGATTG
CCAAGAAAACCCGCTTCATCGAACTGCTGAAGGAAAAGCGCCAGGCGCTCATCACGCATGCCGTCACCAAGGGGCTGAACCCCAAGGCGAAGATGAAGGC
TTCTGGGGTGGAGTGGATTGGGGAGGTGCCGGAGCATTGGGTGGCAATCAAGTTTAACCATGTTGCTCGCGTGACCGAGGGATTGGTTGATCCAAAAGCC
CATCCTTACAGGGAGATGGTTTTGATTGCGCCAAACCATATTGAGTCTGGAACCGGGAAGATTCTGGGGCTGGAAACCGCCGTTTTTCAAAATGCGGAGA
GTGGGAAATACACATGCAAAAAAGGCGCAGTTATTTACTCAAAAATTCGGCCCGCGCTCGCCAAGGTCGCTATTGCTCCATGTGACTGCCTCTGTAGTGC
AGACATGTATCCAATGGATTGCACCGACCGCACATATCCAGAATGGCTTTTCTATTTGATGCTCTCGCCGCCTTTTACGTCGTGGGCAATTTTGGAGTCA
GACCGAGTGGCGATGCCAAAAATCAATCGAGAGTCATTGGCTGACCTTCGAGTGTTTTTACCGCCGATGGATGAGCAATTGGCTGCTGTTGCATGGCTTA
AGGCTCAAGTTGAAAAGCTCGAAATAGTTTCCTTGAAAACCCAGCACAGCATCGATCTTCTCAAAGAACGCCGCGCTGCCTTCATTACTGCTGCCGTCAC
CGGCCAAATCGACCTTCGGGAGTCCGCATGAGCGACACCGCACACCAAGAAAAGCACTTCGAGAGCTACATCGTTTCCAAACTGGCGGCGCAAGGTTGGA
AGGTGGGCGAAACCGCCCAATACGACACCGAACGGGCTTTGTATGCGGAGGACTTGATCGCCTGGCTGGAAGGCTCCGGCCAAGGCGAGAAGTGGGCCAA
GCTCAAGAAGGACAATGGTGATCGTGCGCTCGACATCCTGATGGATCGGCTGACCAAGGCGCTGGAAACGCATGGGGCGGTTCAAGTGCTGCGTCAAGGC
TTCTCCATTGCCGGGTGTGGGCATCTTGATCTCTCTGAAGCCGCGCCTGAAGACATGCGTAACGCCGACGTGCTGAAGCGCTATGCCGCCAATATCCTGC
GTGTGGTGCCGCAGCTTCAGTACCACCCATCACGCAAGCTGGCGATTGATCTGGTGCTGTTCATCAACGGCATTCCGGTGGCGACCGTTGAACTCAAGAC
CGACTTTACCCAGTCGGCAGAAGCGGCGATGGATCAGTACCGCACCGACCGGCTGCCCTACGACTCCAAGACCAAACGCAAGGAACCGCTGCTGACGTTT
AAGCGCGGGGCTGTCGTGCATTTTGCGATGTCTGACTCCGACATCCAGATGGCCACCAAGCTCGACGGGGAAAACACCTTCTTTCTGCCATTCAACAAGG
GAGACAAAGGCCACGCAGGCAACCCCGAGGGTGAGAGAAAGCCCGATGGCACACAGGAATATCCTGTTGCTTACTTCTGGGAGCAGGTCTGTCAGCCGGA
TGCGTGGCTGCGCATCTTCCACAGCTTCGTCTATGTCGAAAAGAAGGATGTGGTTGACCTGAAAGGCAACTGGTCGAAGAAGGAAACGCTGATCTTCCCG
CGCTTCCACCAATGGTCGGCGGTCAATGAGATGATCGCCGATGCCAAGAAAAACGGCCCCGGCTTGTCGTATCTGGCTGATCACAGCGCGGGCTCCGGCA
AGACCAGCACGATTTCATGGACGGCGCACGATCTGGTGAAATTGCGTCGTGACAATGGTGAATCGATCTTCAACAGCGTCATCATCGTGACGGATCGCAA
TGTGCTGGATGGGCAGCTTCAGGATGCGGTGAAGCAGCTCGACCATCAGTTCGGCGTGATCGCTGCGATTGATCGCCAGAAGTCCTCGAAGTCGAAGAGC
CAGCAGTTGGCGGATGCCTTGCTGGCGGGCACGCCCATTATCGTCGTGACCATTCAGACCTTCCCCTTTGCGATGGAAGCCATCGTGACGGACAAGACGC
TGAAGGGTAAAAATTTCGCGGTCATCATCGACGAAGCACATAACTCACAAACCGGCTCGACCGCCGCCAAGCTACAGACGGCGCTGGCCATGAGCGGCAA
TGGCAAGATGAGCACGCTGACGGTGGAAGAGCTGCTTGAGCAGCTTCAAAAATCGCGGGCACGTCCGGACAACATCAGCTATTTCGCCTTCACCGGCACG
CCGAAGCATTCCACGATGATGCTCTTTGGCCGACCGACCGACCCGACACAACCAGCCTCGAAAAGTAATCTTCCCCGCGCATTCCACCGCTACCCGATGC
GGCAAGCCATTGAGGAAGGCTTCATTCTGGATGTGCTGCTGGGCTACGTGCCCTACAAGACGGCGTTCAACCTCGCCAAGCAGATCGAGGATAGCAAACG
GGTGAGCGGCAAGGCAGCTAAACGGGCCTTGGCACAATGGATGTCGCTGCACCCGACCAATGTCACCCAGAAGGTGCAATTCATCATCGAGCACTTCAGC
AAGAACGTGGCGCACCGGCTCGATGGCAAGGGCAAGGCGATGGTTGTCACCAGTTCACGGGCTGCGGCGATCCGCTACAAGAAGAGCTTTGACGCCTACA
TTGCCAAACACTCGGAATATTCTGGCATTCGCTCATTGATTGCCTTCTCCGGAAAGATGACGGGCAAGCAAGTGATACACGCCGCCGACGACCGTCTGGT
TGGTGACACTTTCTTGGTGGATGAGAGCGAGGAGTTCACCGAGGACAGCATGAATCCCGAGGTGAATGGCCAAGACTTGCGCTTTGCCTTTGATCGCCCG
GAATACCGGGTAATGCTGGTAGCCGACAAGTTCCAGACAGGTTTCGACCAACCAAAATTGGTGGCAATGTACGTCGACAAGAAGATCGCCAACGATGTGG
AAATCGTCCAGACCTTCTCCCGCCTCAACCGAATGGCACCTGGCAAGGATGAGGTCTTTATCATCGACTTCGTGAATGATCCAGCCAACGTCCGCCGTGC
CTTTGCCATGTATGACGACGGGGCGCAGATTGATGATGTTCAAGACCTCAATGTAGTTTACGAGATCAAGGAACAACTCGACGCCCAAGGGTTGTACGAG
GCAAGCGACCTGGAGAGCTTCAAAGAGGCTCGTTTCAAGACCATTCGTGACATCACCCATGCGCAGGAGCCGCAGCACAAGGCTCTGTATGCTGCGACCG
AGAAACCGACGCGATTGTTCAATCAGCGTTTGAAGATGCTGCGTGAAGCGATTGCGACTTGGGAAGCCACCTTCGATAAGGCGCACACCCAAGGCGACGA
GGCGGGCATGAAGTCTGCCGATCACCACCGGCAAGAACATGCCGACCAGATCAAGACGCTGATGGCTTTCAAGTCCGGTTTAGGGCGCTTCTGCCGTACC
TACGCCTACGTGGCCCAGTTGATCGACTTTGGTGACCCGGAGCTGGAGAACTTCGCGGCCTTCGCCAGGCTGCTGCAAAAACGCTTGAGTGGCGAAACGC
CGGAGAACGTCGACTTGAAAGGGTTGGTGCTCACGGGCTTCGACATCAAGGGCAAAGAGGACGACCCCTCTGAGGGTGACGATCCGCTGGTTCTAAAACC
GATCGGCGCTGGCGGTGGCGGCGGCAAGGGCGACAACCCGCACTTCCTGCGCGAGCTTATCGACAAACTCAATCATCTGTTTGGCGATGCCACACCGTTG
CGCGATCAGGCCACTTTCGTTAATCACATCGTTGCGATTGCCCGTGAGAATGATGTCGTGATGGCCCAAATCGAAAACAACACGCGAGATCAGGCGCTGA
AAGGCAATCTGCCGGGCGCTGTCCAGCAGGGCGTTGTGCGGGCGCTGACCTCGCATCAAAAGCTTGCCACGTTGGTTCTAAAGTCGGATCGTCAGGCGAT
GGCTGGATTAACTGATGTAATTTATGAGCTGATCCGCGACCAGAAGAACATTGACCTGGGTGATCTAAATGTTTGATCTGCTCAACTTGCCTGGCGTAAA
GCCAGTCGACCTGCGCATAGGCAGTAAAGGCATCACTGTCATTGCAGAGGTCGTTGAGGGAGACTTGCCGCAATGCCCTGACTGCGCAAAACCGCTGCAT
CGGCATGGGCGACGCGCAAACGTGTTTGCTGACACGCCAATGCAGATGCAGCCCGTTCGATTGGAAATCAGCCGCCCGCGTTACCGCTGCGACACATGTG
GCAAAACCGTCACGCCGGAACTGCCATTTCTGGACGAAAAGCGCCGTGCTACAAAACGTCTGGTCGATGCCATTCGCCAGCGCTGCCTTGGCATGACCTT
CCACGCCCTTGCGGAACAGACGGGCCTAGCGGTAAACACGATCAAGAACATAGCTCATGACTTGATTGAAGAGCTGGAAAGCACCGTTCGCTATGAGACG
CCAGTCATCATGGGCATTGACGAGGTTAGCTTGGCTGGTGCCTACCGCTGCGTCATCACAAACCTTGCCACTAATAACGTCTTTCAAATATTGGAGTTTC
GTACTCAAGACCATCTGAAACCGTTCTTCGAAAACTTGCCGAACAAGGATCGGGTTGAATGGGTTTGTACGGACATGTGGCGTCCCTTCAAACGCTCATT
CAGCCAATATTTGCCGAATGCAAAGCTGGTCATCGACAAGTTTCATGTCGTGAAAATGGCATCCGAAGCCTTGGAGGAAGAGAGAAAGAAGTATCAATCC
ACGCTGACCAAGGATGAACGCATCCAAGTAAAAAAGTCGATCCGTTGGCTTGTACTGAAGCGGCCAGACAACCTTAGCCCCGCAGAGCAGAAAGCGCTGC
TGATTGTTCGACAGACAATTCCCGGCTTGGCTCAGGCCTATGACTTCAAGGAATCTTTTTTTAAGATTTACGACGAACCGGACAAAAAGGCTGCAATGCT
CGCCTTTGAGGCATGGGAAAACAGTTTGCCTGAGAAGGAAATGGAGAAGTTTCATGGTCTTGCCAAGACTGTGCATAACCACTATGACGACATCTTCGCT
TATTGGGATTCGCCCAATCGAATAACAAATGCCTACACAGAATGCCTGAACGGACTGATCAAGGTCTCCAATCGGTTGGGGCGTGGGTACAGCTACGACA
TCATTCGGGCCAAAACGCTGTATGCAAAACACGCCCGTAAAGTGGGAAGCGGAGTACGTCTGACAGCCCCTTCAGTGACAGCAATTCCAACCAAGAGTGT
GTCTGAAACGGTTGAGTACGGACCTCACATTCCAACCTTGATCGAGAACGCCGAAGCTGGCGACTTTGATTGAAAATCAGAGTGTTCCAACCATAGATTG
CAAATAGCC
Protein section
ORF number : 5
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 2031 bp | 676 aa | 133 | 2163 | + | No |
Annotation : hsdMDescription :
ORF sequence :
MAEHTGSGASLADFIWKNAEDLWGDFKHTDFGKIILPFTLLRRLECVLEPTRKEVCDSHAAHKASGIDIDLILRQATRYPFYNTSEYALGNLGSTKTRQN
LQDYIAHFSDNARIIFEQFDFSNTVIRLDKAGVLFKICKNFAGVDLHPEVVSDRVMSNLYEHLIRRFGAEVNEGAEDFMTPRDVVHLATALLLDPDDALF
ESNPGLIRTLYDPTCGTGGFLTDAMNHVAEYSNRFKVPPVLVPHGQELEPETHAVCLTSMLLRTLESDPGRDLSKNIRLGSTLSNDQFANERFHYCLSNP
PFGKKWEKDSDVVNTEHKEKKYDGRFGPGLPRINDGSMLFLLHLASKLELPENGGGRAAIVLSGSPLFNGGASSGESEIRRWLLENDLVEAIVALPTEIF
FRTGIGTYLWILSNKKAAHREKKVQLINATSFWSSIKNEGNKRRSVDDDHRSQIVDIYAAAENSEVSRMIDYRSFGYRRIKVLRPLRMSLVIDDKGLAKL
QDEKAWQKLSAEHQQIWLDALHLHLGTTQLVGWAETFADEMVRSVLAAGTVIKAGKPFVKSLVNSFGQRVPQGEAVLDANGVVISDPELTDYENVPLTED
IRDYLAREVLPHLPDAYIDESFCDEKDKKVGRVGYEINFNRFFYKYVPPRKLNDIDAELKQVESEIAALLAEVATE
LQDYIAHFSDNARIIFEQFDFSNTVIRLDKAGVLFKICKNFAGVDLHPEVVSDRVMSNLYEHLIRRFGAEVNEGAEDFMTPRDVVHLATALLLDPDDALF
ESNPGLIRTLYDPTCGTGGFLTDAMNHVAEYSNRFKVPPVLVPHGQELEPETHAVCLTSMLLRTLESDPGRDLSKNIRLGSTLSNDQFANERFHYCLSNP
PFGKKWEKDSDVVNTEHKEKKYDGRFGPGLPRINDGSMLFLLHLASKLELPENGGGRAAIVLSGSPLFNGGASSGESEIRRWLLENDLVEAIVALPTEIF
FRTGIGTYLWILSNKKAAHREKKVQLINATSFWSSIKNEGNKRRSVDDDHRSQIVDIYAAAENSEVSRMIDYRSFGYRRIKVLRPLRMSLVIDDKGLAKL
QDEKAWQKLSAEHQQIWLDALHLHLGTTQLVGWAETFADEMVRSVLAAGTVIKAGKPFVKSLVNSFGQRVPQGEAVLDANGVVISDPELTDYENVPLTED
IRDYLAREVLPHLPDAYIDESFCDEKDKKVGRVGYEINFNRFFYKYVPPRKLNDIDAELKQVESEIAALLAEVATE
Blast result :ORF 2
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1050 bp | 349 aa | 2160 | 3209 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MSQLTHAPDALLSEIRGLIDDARRQVAQIANSALTLTYWKIGKRIGVEILGGERAAYGSQIVVSLARQLEQDYGNGFGEKNLRRMIQFAEVFPDEGIVVS
LIRELTWTHFIALLPLKDPLAREFYAEMCRVERWSVRTLRQKINGMLFERTVLSKNSEEVVRQELATLRDGQMTPDMVFRDPYLLDFLGLSGAYSEKDLE
AAILREMESFLLEMGSGFCFVERQKRMSVGGDDFYLDLLFYHRHLRRLVAIELKLEKFQPSHKGQMELYLRWLDKHERTVGEEPPIGLILCASADAEQVE
LLQLDEASIRVAEYLVELPPVAVLRERLHRAIEHARERTALAASDGEQA
LIRELTWTHFIALLPLKDPLAREFYAEMCRVERWSVRTLRQKINGMLFERTVLSKNSEEVVRQELATLRDGQMTPDMVFRDPYLLDFLGLSGAYSEKDLE
AAILREMESFLLEMGSGFCFVERQKRMSVGGDDFYLDLLFYHRHLRRLVAIELKLEKFQPSHKGQMELYLRWLDKHERTVGEEPPIGLILCASADAEQVE
LLQLDEASIRVAEYLVELPPVAVLRERLHRAIEHARERTALAASDGEQA
Blast result :ORF 3
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1326 bp | 441 aa | 3206 | 4531 | + | No |
Annotation : hsdSDescription :
ORF sequence :
MSHYKPYPAYRDSNVEWIGQVPEHWEIKRLRHVASFTNSNVDKKSYDGQAAVSLCNYTDVYYNEFITADLPFMQATASSSEIEQFTLKKGDVIITKDSED
PSDIGIPSLVAEDVPGVVCGYHLTMIRTASADTSRLLHRILQSHPTQAHFFVGAPGITRYGLGQDTIGDVRVCLPPPQDQGFIAACLDRETARFDALIAK
KTRFIELLKEKRQALITHAVTKGLNPKAKMKASGVEWIGEVPEHWVAIKFNHVARVTEGLVDPKAHPYREMVLIAPNHIESGTGKILGLETAVFQNAESG
KYTCKKGAVIYSKIRPALAKVAIAPCDCLCSADMYPMDCTDRTYPEWLFYLMLSPPFTSWAILESDRVAMPKINRESLADLRVFLPPMDEQLAAVAWLKA
QVEKLEIVSLKTQHSIDLLKERRAAFITAAVTGQIDLRESA
PSDIGIPSLVAEDVPGVVCGYHLTMIRTASADTSRLLHRILQSHPTQAHFFVGAPGITRYGLGQDTIGDVRVCLPPPQDQGFIAACLDRETARFDALIAK
KTRFIELLKEKRQALITHAVTKGLNPKAKMKASGVEWIGEVPEHWVAIKFNHVARVTEGLVDPKAHPYREMVLIAPNHIESGTGKILGLETAVFQNAESG
KYTCKKGAVIYSKIRPALAKVAIAPCDCLCSADMYPMDCTDRTYPEWLFYLMLSPPFTSWAILESDRVAMPKINRESLADLRVFLPPMDEQLAAVAWLKA
QVEKLEIVSLKTQHSIDLLKERRAAFITAAVTGQIDLRESA
Blast result :ORF 4
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 3249 bp | 1082 aa | 4528 | 7776 | + | No |
Annotation : hsdRDescription :
ORF sequence :
MSDTAHQEKHFESYIVSKLAAQGWKVGETAQYDTERALYAEDLIAWLEGSGQGEKWAKLKKDNGDRALDILMDRLTKALETHGAVQVLRQGFSIAGCGHL
DLSEAAPEDMRNADVLKRYAANILRVVPQLQYHPSRKLAIDLVLFINGIPVATVELKTDFTQSAEAAMDQYRTDRLPYDSKTKRKEPLLTFKRGAVVHFA
MSDSDIQMATKLDGENTFFLPFNKGDKGHAGNPEGERKPDGTQEYPVAYFWEQVCQPDAWLRIFHSFVYVEKKDVVDLKGNWSKKETLIFPRFHQWSAVN
EMIADAKKNGPGLSYLADHSAGSGKTSTISWTAHDLVKLRRDNGESIFNSVIIVTDRNVLDGQLQDAVKQLDHQFGVIAAIDRQKSSKSKSQQLADALLA
GTPIIVVTIQTFPFAMEAIVTDKTLKGKNFAVIIDEAHNSQTGSTAAKLQTALAMSGNGKMSTLTVEELLEQLQKSRARPDNISYFAFTGTPKHSTMMLF
GRPTDPTQPASKSNLPRAFHRYPMRQAIEEGFILDVLLGYVPYKTAFNLAKQIEDSKRVSGKAAKRALAQWMSLHPTNVTQKVQFIIEHFSKNVAHRLDG
KGKAMVVTSSRAAAIRYKKSFDAYIAKHSEYSGIRSLIAFSGKMTGKQVIHAADDRLVGDTFLVDESEEFTEDSMNPEVNGQDLRFAFDRPEYRVMLVAD
KFQTGFDQPKLVAMYVDKKIANDVEIVQTFSRLNRMAPGKDEVFIIDFVNDPANVRRAFAMYDDGAQIDDVQDLNVVYEIKEQLDAQGLYEASDLESFKE
ARFKTIRDITHAQEPQHKALYAATEKPTRLFNQRLKMLREAIATWEATFDKAHTQGDEAGMKSADHHRQEHADQIKTLMAFKSGLGRFCRTYAYVAQLID
FGDPELENFAAFARLLQKRLSGETPENVDLKGLVLTGFDIKGKEDDPSEGDDPLVLKPIGAGGGGGKGDNPHFLRELIDKLNHLFGDATPLRDQATFVNH
IVAIARENDVVMAQIENNTRDQALKGNLPGAVQQGVVRALTSHQKLATLVLKSDRQAMAGLTDVIYELIRDQKNIDLGDLNV
DLSEAAPEDMRNADVLKRYAANILRVVPQLQYHPSRKLAIDLVLFINGIPVATVELKTDFTQSAEAAMDQYRTDRLPYDSKTKRKEPLLTFKRGAVVHFA
MSDSDIQMATKLDGENTFFLPFNKGDKGHAGNPEGERKPDGTQEYPVAYFWEQVCQPDAWLRIFHSFVYVEKKDVVDLKGNWSKKETLIFPRFHQWSAVN
EMIADAKKNGPGLSYLADHSAGSGKTSTISWTAHDLVKLRRDNGESIFNSVIIVTDRNVLDGQLQDAVKQLDHQFGVIAAIDRQKSSKSKSQQLADALLA
GTPIIVVTIQTFPFAMEAIVTDKTLKGKNFAVIIDEAHNSQTGSTAAKLQTALAMSGNGKMSTLTVEELLEQLQKSRARPDNISYFAFTGTPKHSTMMLF
GRPTDPTQPASKSNLPRAFHRYPMRQAIEEGFILDVLLGYVPYKTAFNLAKQIEDSKRVSGKAAKRALAQWMSLHPTNVTQKVQFIIEHFSKNVAHRLDG
KGKAMVVTSSRAAAIRYKKSFDAYIAKHSEYSGIRSLIAFSGKMTGKQVIHAADDRLVGDTFLVDESEEFTEDSMNPEVNGQDLRFAFDRPEYRVMLVAD
KFQTGFDQPKLVAMYVDKKIANDVEIVQTFSRLNRMAPGKDEVFIIDFVNDPANVRRAFAMYDDGAQIDDVQDLNVVYEIKEQLDAQGLYEASDLESFKE
ARFKTIRDITHAQEPQHKALYAATEKPTRLFNQRLKMLREAIATWEATFDKAHTQGDEAGMKSADHHRQEHADQIKTLMAFKSGLGRFCRTYAYVAQLID
FGDPELENFAAFARLLQKRLSGETPENVDLKGLVLTGFDIKGKEDDPSEGDDPLVLKPIGAGGGGGKGDNPHFLRELIDKLNHLFGDATPLRDQATFVNH
IVAIARENDVVMAQIENNTRDQALKGNLPGAVQQGVVRALTSHQKLATLVLKSDRQAMAGLTDVIYELIRDQKNIDLGDLNV
Blast result :ORF 5
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1305 bp | 434 aa | 7769 | 9073 | + | No |
Chemistry : Unknow
ORF sequence :
MFDLLNLPGVKPVDLRIGSKGITVIAEVVEGDLPQCPDCAKPLHRHGRRANVFADTPMQMQPVRLEISRPRYRCDTCGKTVTPELPFLDEKRRATKRLVD
AIRQRCLGMTFHALAEQTGLAVNTIKNIAHDLIEELESTVRYETPVIMGIDEVSLAGAYRCVITNLATNNVFQILEFRTQDHLKPFFENLPNKDRVEWVC
TDMWRPFKRSFSQYLPNAKLVIDKFHVVKMASEALEEERKKYQSTLTKDERIQVKKSIRWLVLKRPDNLSPAEQKALLIVRQTIPGLAQAYDFKESFFKI
YDEPDKKAAMLAFEAWENSLPEKEMEKFHGLAKTVHNHYDDIFAYWDSPNRITNAYTECLNGLIKVSNRLGRGYSYDIIRAKTLYAKHARKVGSGVRLTA
PSVTAIPTKSVSETVEYGPHIPTLIENAEAGDFD
AIRQRCLGMTFHALAEQTGLAVNTIKNIAHDLIEELESTVRYETPVIMGIDEVSLAGAYRCVITNLATNNVFQILEFRTQDHLKPFFENLPNKDRVEWVC
TDMWRPFKRSFSQYLPNAKLVIDKFHVVKMASEALEEERKKYQSTLTKDERIQVKKSIRWLVLKRPDNLSPAEQKALLIVRQTIPGLAQAYDFKESFFKI
YDEPDKKAAMLAFEAWENSLPEKEMEKFHGLAKTVHNHYDDIFAYWDSPNRITNAYTECLNGLIKVSNRLGRGYSYDIIRAKTLYAKHARKVGSGVRLTA
PSVTAIPTKSVSETVEYGPHIPTLIENAEAGDFD
Blast result :
Comments
ISSm4 transposase (orf5) is 56% aa similar to ISStma11.
ISSm4 is an ISL3 family insertion sequence with a restriction-modification system as cargo genes. ORF1 is an hsdM gene (modification protein), ORF2 codes for a hypothetical protein, ORF3 is an hsdS gene (specificity protein), ORF4 is an hsdR gene (restriction protein), and ORF5 is a tnpa gene (transposase protein).
ISSm4 is an ISL3 family insertion sequence with a restriction-modification system as cargo genes. ORF1 is an hsdM gene (modification protein), ORF2 codes for a hypothetical protein, ORF3 is an hsdS gene (specificity protein), ORF4 is an hsdR gene (restriction protein), and ORF5 is a tnpa gene (transposase protein).
References
1] David A. Boyd (2013) Direct submission