ISSis6

  • Family ISH3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_012623 ND Sulfolobus islandicus
Sulfolobus islandicus Y.N.15.51
DNA section
IS Length : 1222 bp

Ends


IR Length : 16

IRL : CGGTAGACCCAAAATCGTATTATGAAAAATAATTCTGACAGAATAATATC
IRR : CGGTAGACCCAAAATCACCTCCTTGAAAATAAATCTATATTATTAATAAG

Insertion site


Left flankDirect repeatRight flankDR Length
GGCATAGTTCAAATAGGGGGAGGGT5
CTTACGCCCTAATAAGGGAGATAT4
GCCTCGCCCCTTCTTTCTAGGGCA4
CCTCCCCGGTCAGAGAGGCG0
TCCCCCTTGAGGAGAGGAGG0
AAGCCCACCTTGTTGTCCGGGGTT4

DNA sequence

CGGTAGACCCAAAATCGTATTATGAAAAATAATTCTGACAGAATAATATCGATTCATGATAGATAACAGGATTTATATGAGTATTAAGAATTCAGTTGAA
GAAAGGTTTAAGCTGAGGGAGATGTGGTATTACCACGTGAGTAAGTGAGATGGTAACACCGGTACTCCCTCACCAAAATAACATTCAACAAATAGGATAT
AAATTACTTTCCATGCTGAACTTCAAGGGAAAGAAAGGGGAAGAGGTGGCGAGAACCCTCATCTCAGCGTGTTTATGGAACGATTCGGTGGAAAGCAAGT
CGAGGGCGTATGGCGTGTCCCCACAGACCGTGAGGAATTACGTGGAGGAGCAAGGGATGGAAGTTATTGAGAAACTCTTGGAAAGCGCCAGGAAGATATC
CTTGAAGGTACTGAAGGGAGTCAAGGAGATAGACGTCTCAATAGACTGGACAACCAAGACCTGGTACGGGAGACCGGTGGGAGGGCTCGGGAGTTCGGAG
GAGGGAAACTCTTGGAACTACGCAACTGCGACGACAAAGTTTAATGGGAAAGTGCTCCTACTGGCCTTCGTCACTCAAGTCAAGGGGATGACTAAGGAAG
AGATCGTGAAGGCCCTCGTGGAGCAAGTCGTCGCGATGGGGTTCAAGATAAGGTTGATAACTCTTGACGCAGGTTTCTATACTGTTGATGTGCTCAACTT
CATTTCACAGTTTAAGTATATAGTTGCTGTGCCTGTTGGGGATGTTAAGGTTTATGAGGAGTTTGACGGGGATTACGCAACTAATAGTAAGAGGCATAGG
AGGGATGAGCAGGTCAAGTTCAGGCTTCTCGTGTACAGCAAGGAAAAAGTGAGGAGAAAGAAGAAGAGTGTTGTTTATTTTGCTAGGGCTACTAATCTAG
ACCTACCGAAGGGGGAGGTGTTGGATTTGTACAATAAGGTAAGGGGTCCCATAGAGACCTCTTATAGGAACATTAAGGCTTTTCTTCCATTTACTAGTTC
TACTAAGTTTGTTTTCCGCACGTTGATCTTCGTGCTGGCCGTGGCCTTCTACTCCCTGTACACCGTGTTCAAGGGGGAGGTGAGGAGGGAGCAGTTCAGG
ATACTCCTAATACTCTTGTTTTCTGATGATTTATTCTATCTAAAAGATTTTCTATTTAAATCAATAGAACCGCTTATTAATAATATAGATTTATTTTCAA
GGAGGTGATTTTGGGTCTACCG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1059 bp352 aa1501208+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MVTPVLPHQNNIQQIGYKLLSMLNFKGKKGEEVARTLISACLWNDSVESKSRAYGVSPQTVRNYVEEQGMEVIEKLLESARKISLKVLKGVKEIDVSIDW
TTKTWYGRPVGGLGSSEEGNSWNYATATTKFNGKVLLLAFVTQVKGMTKEEIVKALVEQVVAMGFKIRLITLDAGFYTVDVLNFISQFKYIVAVPVGDVK
VYEEFDGDYATNSKRHRRDEQVKFRLLVYSKEKVRRKKKSVVYFARATNLDLPKGEVLDLYNKVRGPIETSYRNIKAFLPFTSSTKFVFRTLIFVLAVAF
YSLYTVFKGEVRREQFRILLILLFSDDLFYLKDFLFKSIEPLINNIDLFSRR

 

Blast result :
Comments
The protein encoded by ISSis6 has 80% amino acid sequence identity to that encoded by ISSto14.
References
1] Romine, M. (unpublished)