ISSis6
- Family ISH3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_012623 | ND | Sulfolobus islandicus | Sulfolobus islandicus Y.N.15.51 |
DNA section
IS Length : 1222 bp
Ends
IR Length : 16
IRL : CGGTAGACCCAAAATCGTATTATGAAAAATAATTCTGACAGAATAATATC
IRR : CGGTAGACCCAAAATCACCTCCTTGAAAATAAATCTATATTATTAATAAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGCATAGTTC | AAATA | GGGGGAGGGT | 5 |
CTTACGCCCT | AATA | AGGGAGATAT | 4 |
GCCTCGCCCC | TTCT | TTCTAGGGCA | 4 |
CCTCCCCGGT | CAGAGAGGCG | 0 | |
TCCCCCTTGA | GGAGAGGAGG | 0 | |
AAGCCCACCT | TGTT | GTCCGGGGTT | 4 |
DNA sequence
CGGTAGACCCAAAATCGTATTATGAAAAATAATTCTGACAGAATAATATCGATTCATGATAGATAACAGGATTTATATGAGTATTAAGAATTCAGTTGAA
GAAAGGTTTAAGCTGAGGGAGATGTGGTATTACCACGTGAGTAAGTGAGATGGTAACACCGGTACTCCCTCACCAAAATAACATTCAACAAATAGGATAT
AAATTACTTTCCATGCTGAACTTCAAGGGAAAGAAAGGGGAAGAGGTGGCGAGAACCCTCATCTCAGCGTGTTTATGGAACGATTCGGTGGAAAGCAAGT
CGAGGGCGTATGGCGTGTCCCCACAGACCGTGAGGAATTACGTGGAGGAGCAAGGGATGGAAGTTATTGAGAAACTCTTGGAAAGCGCCAGGAAGATATC
CTTGAAGGTACTGAAGGGAGTCAAGGAGATAGACGTCTCAATAGACTGGACAACCAAGACCTGGTACGGGAGACCGGTGGGAGGGCTCGGGAGTTCGGAG
GAGGGAAACTCTTGGAACTACGCAACTGCGACGACAAAGTTTAATGGGAAAGTGCTCCTACTGGCCTTCGTCACTCAAGTCAAGGGGATGACTAAGGAAG
AGATCGTGAAGGCCCTCGTGGAGCAAGTCGTCGCGATGGGGTTCAAGATAAGGTTGATAACTCTTGACGCAGGTTTCTATACTGTTGATGTGCTCAACTT
CATTTCACAGTTTAAGTATATAGTTGCTGTGCCTGTTGGGGATGTTAAGGTTTATGAGGAGTTTGACGGGGATTACGCAACTAATAGTAAGAGGCATAGG
AGGGATGAGCAGGTCAAGTTCAGGCTTCTCGTGTACAGCAAGGAAAAAGTGAGGAGAAAGAAGAAGAGTGTTGTTTATTTTGCTAGGGCTACTAATCTAG
ACCTACCGAAGGGGGAGGTGTTGGATTTGTACAATAAGGTAAGGGGTCCCATAGAGACCTCTTATAGGAACATTAAGGCTTTTCTTCCATTTACTAGTTC
TACTAAGTTTGTTTTCCGCACGTTGATCTTCGTGCTGGCCGTGGCCTTCTACTCCCTGTACACCGTGTTCAAGGGGGAGGTGAGGAGGGAGCAGTTCAGG
ATACTCCTAATACTCTTGTTTTCTGATGATTTATTCTATCTAAAAGATTTTCTATTTAAATCAATAGAACCGCTTATTAATAATATAGATTTATTTTCAA
GGAGGTGATTTTGGGTCTACCG
GAAAGGTTTAAGCTGAGGGAGATGTGGTATTACCACGTGAGTAAGTGAGATGGTAACACCGGTACTCCCTCACCAAAATAACATTCAACAAATAGGATAT
AAATTACTTTCCATGCTGAACTTCAAGGGAAAGAAAGGGGAAGAGGTGGCGAGAACCCTCATCTCAGCGTGTTTATGGAACGATTCGGTGGAAAGCAAGT
CGAGGGCGTATGGCGTGTCCCCACAGACCGTGAGGAATTACGTGGAGGAGCAAGGGATGGAAGTTATTGAGAAACTCTTGGAAAGCGCCAGGAAGATATC
CTTGAAGGTACTGAAGGGAGTCAAGGAGATAGACGTCTCAATAGACTGGACAACCAAGACCTGGTACGGGAGACCGGTGGGAGGGCTCGGGAGTTCGGAG
GAGGGAAACTCTTGGAACTACGCAACTGCGACGACAAAGTTTAATGGGAAAGTGCTCCTACTGGCCTTCGTCACTCAAGTCAAGGGGATGACTAAGGAAG
AGATCGTGAAGGCCCTCGTGGAGCAAGTCGTCGCGATGGGGTTCAAGATAAGGTTGATAACTCTTGACGCAGGTTTCTATACTGTTGATGTGCTCAACTT
CATTTCACAGTTTAAGTATATAGTTGCTGTGCCTGTTGGGGATGTTAAGGTTTATGAGGAGTTTGACGGGGATTACGCAACTAATAGTAAGAGGCATAGG
AGGGATGAGCAGGTCAAGTTCAGGCTTCTCGTGTACAGCAAGGAAAAAGTGAGGAGAAAGAAGAAGAGTGTTGTTTATTTTGCTAGGGCTACTAATCTAG
ACCTACCGAAGGGGGAGGTGTTGGATTTGTACAATAAGGTAAGGGGTCCCATAGAGACCTCTTATAGGAACATTAAGGCTTTTCTTCCATTTACTAGTTC
TACTAAGTTTGTTTTCCGCACGTTGATCTTCGTGCTGGCCGTGGCCTTCTACTCCCTGTACACCGTGTTCAAGGGGGAGGTGAGGAGGGAGCAGTTCAGG
ATACTCCTAATACTCTTGTTTTCTGATGATTTATTCTATCTAAAAGATTTTCTATTTAAATCAATAGAACCGCTTATTAATAATATAGATTTATTTTCAA
GGAGGTGATTTTGGGTCTACCG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1059 bp | 352 aa | 150 | 1208 | + | No |
Chemistry : DDE
ORF sequence :
MVTPVLPHQNNIQQIGYKLLSMLNFKGKKGEEVARTLISACLWNDSVESKSRAYGVSPQTVRNYVEEQGMEVIEKLLESARKISLKVLKGVKEIDVSIDW
TTKTWYGRPVGGLGSSEEGNSWNYATATTKFNGKVLLLAFVTQVKGMTKEEIVKALVEQVVAMGFKIRLITLDAGFYTVDVLNFISQFKYIVAVPVGDVK
VYEEFDGDYATNSKRHRRDEQVKFRLLVYSKEKVRRKKKSVVYFARATNLDLPKGEVLDLYNKVRGPIETSYRNIKAFLPFTSSTKFVFRTLIFVLAVAF
YSLYTVFKGEVRREQFRILLILLFSDDLFYLKDFLFKSIEPLINNIDLFSRR
TTKTWYGRPVGGLGSSEEGNSWNYATATTKFNGKVLLLAFVTQVKGMTKEEIVKALVEQVVAMGFKIRLITLDAGFYTVDVLNFISQFKYIVAVPVGDVK
VYEEFDGDYATNSKRHRRDEQVKFRLLVYSKEKVRRKKKSVVYFARATNLDLPKGEVLDLYNKVRGPIETSYRNIKAFLPFTSSTKFVFRTLIFVLAVAF
YSLYTVFKGEVRREQFRILLILLFSDDLFYLKDFLFKSIEPLINNIDLFSRR
Blast result :
Comments
The protein encoded by ISSis6 has 80% amino acid sequence identity to that encoded by ISSto14.
References
1] Romine, M. (unpublished)