ISRsl1
- Family ISLre2
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_015703 | ND | Runella slithyformis | Runella slithyformis DSM 19594 |
DNA section
IS Length : 1302 bp
Ends
IR Length : 22/27
IRL : GGGTGCATTTCAAATGGTCGCATTATAGTTCTAACTTAAGCTAATGGATA
IRR : GGGTGCATTTCAATTTGTCGCTATGTATCCATAGTACTCTTAATAGGCTC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TGACAAAGTC | AACGTTAATG | 0 |
DNA sequence
GGGTGCATTTCAAATGGTCGCATTATAGTTCTAACTTAAGCTAATGGATACACAAGCCTTACCGACCATGAGCAAAGAGGAATATCCGGCCTTGGCCGAA
CAAAAGTATAACGATCTGCAAGGTCTAAAAAAGGAGCCTACTTTCTACGATTATGAAAAATCCTTTGAGCAGATTTGGCTGGATTTAGGCCGACAAGTCT
TAGAAAAAAACCTGAATGACGTGCCGGAGGATCGACGTAAAAATCGGATCGCCGACGCGAAAAGCATGACTACCCGCTTTGGAAAAATAGAAATTGCTAA
CAGTGAACCATTTAGCCATCATCCTAACGGATTTGGTATCAGCCCATTCTTGCAAGAAAAACTCGTCTTTTGGGGCCACTCAGAAGTCTATAAAGAAGCG
GCTGAGTTAGCCCATTCGTTGCTGTGTATCCCTGTTTGTAGCAGCCAGGTTTATCGACTTACTAACCACTATAGAGCCGCTATCGAACCCGATTTAGCCC
AGATTCCTGCCCCTGCTGAGCCAGAATCGGCGCCGACCGTAGTACCAACGGTTGTTTATGTAGAGATCGACGGAGCCAATTTACTTACCGATGAAGGCTA
TAAAGACACCAAATTAGCCCGTATTTTTCCTGATACGGCCCTTCAGGCCAGCGTGGTCGAAGATCGGGGCGGACGCATTACGGAGTCCGAGTTTATCGCC
CATTTAGGCAATGTGACGGAGTTTAGTGCTAAAGTGATGCCTGTAGTAGATCGCTATAATACCCTTGAAGAAAACGTAGTGGGCATCAGCGATGGGGCCA
TCTGGATTCGACACTTGATGGAAAAAGCGTGTCCAAAAGCAACACTCATTTTAGATCTTTATCATTGTTTGGGCCATGTCAGCGAGGCTGGTGTGGCGGC
TTTTGGGAGTGGGAAGCGGGCAATAGATTGGCTTAACACTCAACGTAATCTTCTGTTAGAAAGTTTTTTAAACAGTATTTCAGCGAATATCAAGGGGCTA
CCCATTGCTGGTTCTCTTCGCGATTCAGTGTGTTCTTATCTGAAATCAAATCGAGACCGAATGGACTACAGGTGTTATCGGGAACGGGGTTTATTGATTG
GTTCTGGGGCGATAGAATCGGCTCACCGAACAGTCATGCAACGTCGTTTGAAGCGATCTGGTCAACGGTGGAGTATTCGAGGTGCTCAACGCGTGTTAAA
CCTGCGGGTGTGTTCGATGAGTGGCCGCTGGCGATTGGTAGGCGAGCACATAGAGCCTATTAAGAGTACTATGGATACATAGCGACAAATTGAAATGCAC
CC
CAAAAGTATAACGATCTGCAAGGTCTAAAAAAGGAGCCTACTTTCTACGATTATGAAAAATCCTTTGAGCAGATTTGGCTGGATTTAGGCCGACAAGTCT
TAGAAAAAAACCTGAATGACGTGCCGGAGGATCGACGTAAAAATCGGATCGCCGACGCGAAAAGCATGACTACCCGCTTTGGAAAAATAGAAATTGCTAA
CAGTGAACCATTTAGCCATCATCCTAACGGATTTGGTATCAGCCCATTCTTGCAAGAAAAACTCGTCTTTTGGGGCCACTCAGAAGTCTATAAAGAAGCG
GCTGAGTTAGCCCATTCGTTGCTGTGTATCCCTGTTTGTAGCAGCCAGGTTTATCGACTTACTAACCACTATAGAGCCGCTATCGAACCCGATTTAGCCC
AGATTCCTGCCCCTGCTGAGCCAGAATCGGCGCCGACCGTAGTACCAACGGTTGTTTATGTAGAGATCGACGGAGCCAATTTACTTACCGATGAAGGCTA
TAAAGACACCAAATTAGCCCGTATTTTTCCTGATACGGCCCTTCAGGCCAGCGTGGTCGAAGATCGGGGCGGACGCATTACGGAGTCCGAGTTTATCGCC
CATTTAGGCAATGTGACGGAGTTTAGTGCTAAAGTGATGCCTGTAGTAGATCGCTATAATACCCTTGAAGAAAACGTAGTGGGCATCAGCGATGGGGCCA
TCTGGATTCGACACTTGATGGAAAAAGCGTGTCCAAAAGCAACACTCATTTTAGATCTTTATCATTGTTTGGGCCATGTCAGCGAGGCTGGTGTGGCGGC
TTTTGGGAGTGGGAAGCGGGCAATAGATTGGCTTAACACTCAACGTAATCTTCTGTTAGAAAGTTTTTTAAACAGTATTTCAGCGAATATCAAGGGGCTA
CCCATTGCTGGTTCTCTTCGCGATTCAGTGTGTTCTTATCTGAAATCAAATCGAGACCGAATGGACTACAGGTGTTATCGGGAACGGGGTTTATTGATTG
GTTCTGGGGCGATAGAATCGGCTCACCGAACAGTCATGCAACGTCGTTTGAAGCGATCTGGTCAACGGTGGAGTATTCGAGGTGCTCAACGCGTGTTAAA
CCTGCGGGTGTGTTCGATGAGTGGCCGCTGGCGATTGGTAGGCGAGCACATAGAGCCTATTAAGAGTACTATGGATACATAGCGACAAATTGAAATGCAC
CC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1239 bp | 412 aa | 44 | 1282 | + | No |
Chemistry : DDE
ORF sequence :
MDTQALPTMSKEEYPALAEQKYNDLQGLKKEPTFYDYEKSFEQIWLDLGRQVLEKNLNDVPEDRRKNRIADAKSMTTRFGKIEIANSEPFSHHPNGFGIS
PFLQEKLVFWGHSEVYKEAAELAHSLLCIPVCSSQVYRLTNHYRAAIEPDLAQIPAPAEPESAPTVVPTVVYVEIDGANLLTDEGYKDTKLARIFPDTAL
QASVVEDRGGRITESEFIAHLGNVTEFSAKVMPVVDRYNTLEENVVGISDGAIWIRHLMEKACPKATLILDLYHCLGHVSEAGVAAFGSGKRAIDWLNTQ
RNLLLESFLNSISANIKGLPIAGSLRDSVCSYLKSNRDRMDYRCYRERGLLIGSGAIESAHRTVMQRRLKRSGQRWSIRGAQRVLNLRVCSMSGRWRLVG
EHIEPIKSTMDT
PFLQEKLVFWGHSEVYKEAAELAHSLLCIPVCSSQVYRLTNHYRAAIEPDLAQIPAPAEPESAPTVVPTVVYVEIDGANLLTDEGYKDTKLARIFPDTAL
QASVVEDRGGRITESEFIAHLGNVTEFSAKVMPVVDRYNTLEENVVGISDGAIWIRHLMEKACPKATLILDLYHCLGHVSEAGVAAFGSGKRAIDWLNTQ
RNLLLESFLNSISANIKGLPIAGSLRDSVCSYLKSNRDRMDYRCYRERGLLIGSGAIESAHRTVMQRRLKRSGQRWSIRGAQRVLNLRVCSMSGRWRLVG
EHIEPIKSTMDT
Blast result :
Comments
ISRsl1 is 45% aa similar to ISPle2.
References
1] ISfinder annotation (2013)
2] Lucas,S., Han,J., Lapidus,A., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Kyrpides,N., Mavromatis,K., Ivanova,N., Ovchinnikova,G., Zhang,X., Misra,M., Detter,J.C., Tapia,R., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Tindall,B., Faehrich,R., Brambilla,E., Klenk,H.-P. and Eisen,J.A. (2011) Direct submission GenBank.
2] Lucas,S., Han,J., Lapidus,A., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Kyrpides,N., Mavromatis,K., Ivanova,N., Ovchinnikova,G., Zhang,X., Misra,M., Detter,J.C., Tapia,R., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Tindall,B., Faehrich,R., Brambilla,E., Klenk,H.-P. and Eisen,J.A. (2011) Direct submission GenBank.