ISNpe1
- Family IS701
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP003372 | ND | Natrinema pellirubrum | Natrinema pellirubrum DSM 15624 |
DNA section
IS Length : 1277 bp
Ends
IR Length : 14
IRL : CTCAGCTTTGCACGTTGAAGTAGGAGCGTGACGTAGGCGGTGGCAAAGAC
IRR : CTCAGCTTTGCACGCTAGCCTCGGTTGTTGAGTGAACGAAGAGATGATCG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CCCTCCTTAC | TAATTA | TCTGGATTGA | 6 |
| GGCGGTCTAG | TGACGTA | GATGTTCGAC | 7 |
| TTGAAATATA | GTCGTAAT | CAAAGTTCTTT | 8 |
| CTAGTATATC | TAATAGC | TAGAGTAGGT | 7 |
DNA sequence
CTCAGCTTTGCACGTTGAAGTAGGAGCGTGACGTAGGCGGTGGCAAAGACGGATGATGCCGATTACGGACTTCTTGTCGTGTACGCGTGCGTTCGACGAG
TTCGAGTCGCTGTCTCCAGCACAACGTCATCACGCCAAAACCTACGCCACAGGTCTTGTTGCGGCCAGCAACAAGACCGTGGCGGGCATCGCACGCGAAG
TCCTTCCAGCCAACAGCAAACGCGCTCTCAACAAGTTCCTCACCGAGTACGACTGGGACGAACAGCAGTTCAACCACGAACGCCTTGAAGAACTCCAGAA
ACACGGTGAAACACGCTGGTCAACGGATGGCTACATTATCCTCGACGACACGATCACCGAGAAAGCCGGGGACGAAGTCCCCGGCGTCGGCCACTTCTAC
GATCACGCCGAAGGTGACACTGTCTGGGGGCAAGACCTCATCTACGCCTTCTACGCTGACGACAAAACCGCTTACCCGCTCACCTTCCGCCTCTACGAAA
AGCAAGACGAGGATGACCAAGACCACGACACCAAGTACGACCTCGCCCGCGAGATCATCACCGAACTCGAAGAAGAGGTAGGTGTGCCTGCGAACACCTA
CCTCTTCGACTCGTGGTTCGCTCACGATTCTGGCCTTCCTGAACACATCGAATCCTACGGCAAGGACTGGATCGGCCCGCTCCGGAGCAATCGACAGGTG
ACTTACGCCGGCAAAGAGCTCCGCGTCGATGCGCTGGAAGAGCGCATCGACACGGTTGAGCGCGATATTGACGACGAAACCTATCACATCTGGACGAAGA
AGCTTCCCGTCTCCCAGTTGGGAGACGTGAAGCTGGTCATCGCAGAGAAAGAGACCGACGGAGACGAAGATAACCCGATCAAGTACCTCGCTACGAACAA
GACCGACGCACCAACCGCCCACATCATTCGCTCCTACGGGATGCGCTGGCGCATCGAGACGTTCTTCGAGGACTCGAAGCAGGATCTCGGCTTGGGAGAC
TGCGAGCTGCAGACTGACGGAGGTGCCAGTCGCCACTGGCACCTCCTGATGGCTGCCTACAGTCTCGTTCGTCTTGATCCCGATTCGAGCGCCTTGGGAA
CGGTTCGCTCGAAGGCGTCATCGCTTCGAGCGAACCTCGAACACTCCCTGAAGGAAGCCGTCTACAACCTTCTCTCGTGGGTTCGAGACAATGATGACCG
CGGTGTTGATGACCTTATGACCGAGATCGATCATCTCTTCGTTCACTCAACAACCGAGGCTAGCGTGCAAAGCTGAG
TTCGAGTCGCTGTCTCCAGCACAACGTCATCACGCCAAAACCTACGCCACAGGTCTTGTTGCGGCCAGCAACAAGACCGTGGCGGGCATCGCACGCGAAG
TCCTTCCAGCCAACAGCAAACGCGCTCTCAACAAGTTCCTCACCGAGTACGACTGGGACGAACAGCAGTTCAACCACGAACGCCTTGAAGAACTCCAGAA
ACACGGTGAAACACGCTGGTCAACGGATGGCTACATTATCCTCGACGACACGATCACCGAGAAAGCCGGGGACGAAGTCCCCGGCGTCGGCCACTTCTAC
GATCACGCCGAAGGTGACACTGTCTGGGGGCAAGACCTCATCTACGCCTTCTACGCTGACGACAAAACCGCTTACCCGCTCACCTTCCGCCTCTACGAAA
AGCAAGACGAGGATGACCAAGACCACGACACCAAGTACGACCTCGCCCGCGAGATCATCACCGAACTCGAAGAAGAGGTAGGTGTGCCTGCGAACACCTA
CCTCTTCGACTCGTGGTTCGCTCACGATTCTGGCCTTCCTGAACACATCGAATCCTACGGCAAGGACTGGATCGGCCCGCTCCGGAGCAATCGACAGGTG
ACTTACGCCGGCAAAGAGCTCCGCGTCGATGCGCTGGAAGAGCGCATCGACACGGTTGAGCGCGATATTGACGACGAAACCTATCACATCTGGACGAAGA
AGCTTCCCGTCTCCCAGTTGGGAGACGTGAAGCTGGTCATCGCAGAGAAAGAGACCGACGGAGACGAAGATAACCCGATCAAGTACCTCGCTACGAACAA
GACCGACGCACCAACCGCCCACATCATTCGCTCCTACGGGATGCGCTGGCGCATCGAGACGTTCTTCGAGGACTCGAAGCAGGATCTCGGCTTGGGAGAC
TGCGAGCTGCAGACTGACGGAGGTGCCAGTCGCCACTGGCACCTCCTGATGGCTGCCTACAGTCTCGTTCGTCTTGATCCCGATTCGAGCGCCTTGGGAA
CGGTTCGCTCGAAGGCGTCATCGCTTCGAGCGAACCTCGAACACTCCCTGAAGGAAGCCGTCTACAACCTTCTCTCGTGGGTTCGAGACAATGATGACCG
CGGTGTTGATGACCTTATGACCGAGATCGATCATCTCTTCGTTCACTCAACAACCGAGGCTAGCGTGCAAAGCTGAG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1224 bp | 407 aa | 53 | 1276 | + | No |
Chemistry : DDE
ORF sequence :
MMPITDFLSCTRAFDEFESLSPAQRHHAKTYATGLVAASNKTVAGIAREVLPANSKRALNKFLTEYDWDEQQFNHERLEELQKHGETRWSTDGYIILDDT
ITEKAGDEVPGVGHFYDHAEGDTVWGQDLIYAFYADDKTAYPLTFRLYEKQDEDDQDHDTKYDLAREIITELEEEVGVPANTYLFDSWFAHDSGLPEHIE
SYGKDWIGPLRSNRQVTYAGKELRVDALEERIDTVERDIDDETYHIWTKKLPVSQLGDVKLVIAEKETDGDEDNPIKYLATNKTDAPTAHIIRSYGMRWR
IETFFEDSKQDLGLGDCELQTDGGASRHWHLLMAAYSLVRLDPDSSALGTVRSKASSLRANLEHSLKEAVYNLLSWVRDNDDRGVDDLMTEIDHLFVHST
TEASVQS
ITEKAGDEVPGVGHFYDHAEGDTVWGQDLIYAFYADDKTAYPLTFRLYEKQDEDDQDHDTKYDLAREIITELEEEVGVPANTYLFDSWFAHDSGLPEHIE
SYGKDWIGPLRSNRQVTYAGKELRVDALEERIDTVERDIDDETYHIWTKKLPVSQLGDVKLVIAEKETDGDEDNPIKYLATNKTDAPTAHIIRSYGMRWR
IETFFEDSKQDLGLGDCELQTDGGASRHWHLLMAAYSLVRLDPDSSALGTVRSKASSLRANLEHSLKEAVYNLLSWVRDNDDRGVDDLMTEIDHLFVHST
TEASVQS
Blast result :
Comments
ISNpe1 is 83% aa similar to ISHwa4.
References
1] ISfinder submission (2012)
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Land,M.L., Hauser,L., Sproer,C., Kyrpides,N., Anderson,I. and Woyke,T.J. (2011) Direct submission GenBank.
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Land,M.L., Hauser,L., Sproer,C., Kyrpides,N., Anderson,I. and Woyke,T.J. (2011) Direct submission GenBank.