ISBeg3

  • Family ISKra4
  • Group ISKra4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABBZ01001452 ND Beggiatoa sp.
Beggiatoa sp. PS
DNA section
IS Length : 1662 bp

Ends


IR Length : 23/24

IRL : GGGTGCAGTCGTTTTAGGACGACGATAAAGCTATTAAAATCAATTTGTTA
IRR : GGGTGCAGTCGTTTTAAGACGACGGCACCAAATTTAGTGAGTTAATTTTC

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GGGTGCAGTCGTTTTAGGACGACGATAAAGCTATTAAAATCAATTTGTTATGTTTTATCAGTAGACTAAAATGGCTAATTAATATCAATTATTTATTTAA
TCAATGGTTTATTGTGGTACAATTTCAAACATGATAAACAAAAATTGTTTTACTTTTGCCGAAGACAAATTTCTTCAGATGATAGATTTTTTCAAAAGCA
ACGAAGCAAATAGCTTAAATTTAAGCGAAGCTGAAGAGTATCTTCAAGAAGATGGTAGAGAACTACTTAGAGAATTATTGGTTGGATATCTTGAGAAACG
TGGTGTTGGTGATATTGGGCAGAGTGTTACAGGAGCAGATGGTCTAAAAAGAACTCATAAACGCCTCCGAACCAAAAAAATCAAAACTTTATTTGGAGAA
GTGGTCATAAATCGCATTGCGTATTCTGGCAGGGGTGTAGCGAGTTTATTTCCTTTAGATGGAATGCTGAATCTTCCCGATCTTGATGTGTCTTATACTT
TACAAAAACATTTGGTGTTAGAAGTAATCAAAACTTCATTTGATGAATCAATTGAGTCAATAAAAAGATGGACTGGGGTTTCGATAACTAAAGACCAAGC
AAAAAATATCATAATTGAATCAGCAAATGATTTTAATAAATTTTATGATTTTCAATTTGTTAAAGAAAAAAATGAAGCAAAGGCACAGCCTCTGGTCATA
CTGACTTCTGATGGTAAAGGAGTTGTCATGCGAACGGAAGCTTTACGAGAAGCCACTCGAAAAAAAGCAGAAAGTAAGAAAATTAATAAAAGTGACCGTC
ATTTTTTGAATAAAAACAAATCAAATTCAAAGCGAATGGCTACAGTGGCATCAGTTTATGAAGTGGCCAGATTTATACGTAAACCGGAAGAGATAACTGA
GGAATTTTTTTCAGCAACGGACTCAAAAAAGAAGAGCAAACGACCTCGCCCAAAAGCAAAACGAGTATGGGCTAGTTTGGAAAAATGTCGTTACGAAGTC
ATTAATGAAATATTTGAAGAAGCTCTACAGCGAGACCCATCAAATAACAAAGAATGGGTAGTTCTCGTTGATGGAGACCCTCATCAAATAAAAACATTCA
AAAAATTATCTAACAAATTCTCAGTGAAATTGACAATAATATGTGACATAATTCATATTTTAGAGTATCTTTGGAAAGCTGGGAAGATTTTAAATGATGA
AAAAAAGTTGAAATTATGGGTTTCTAATAAACTAAGTCAGATTCTTAATGGTAAAAGTAGCTTTGTGGCATCAGGTATAAGACGTTCAGCTACATGCCGC
CAATTAAAAAATCGGGAAGCAATAGACTCTTGTGCTACGTATTTGCTTAATCATTCAAAATATTTGAAATATAATGAATATTTGGAAAAAGGTTATCCTA
TAGCCACTGGAGTTATCGAAGGAGCTTGCCGTTATTTAGTAAAAGACCGAATGGATATAACTGGTGCTAGATGGAGTTTGCAAGGTGCGGAAGCTGTATT
GAAACTAAGAGCTATTAAAATAAGTGGCGATTTCTCAGTTTATTGGGAATTTTATGAGCAGCAACAATATATAAAAAATCATGAAATATTATACCAGACA
CCGTCAGTTCTGGAAAATTAACTCACTAAATTTGGTGCCGTCGTCTTAAAACGACTGCACCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1518 bp505 aa1041621+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MVYCGTISNMINKNCFTFAEDKFLQMIDFFKSNEANSLNLSEAEEYLQEDGRELLRELLVGYLEKRGVGDIGQSVTGADGLKRTHKRLRTKKIKTLFGEV
VINRIAYSGRGVASLFPLDGMLNLPDLDVSYTLQKHLVLEVIKTSFDESIESIKRWTGVSITKDQAKNIIIESANDFNKFYDFQFVKEKNEAKAQPLVIL
TSDGKGVVMRTEALREATRKKAESKKINKSDRHFLNKNKSNSKRMATVASVYEVARFIRKPEEITEEFFSATDSKKKSKRPRPKAKRVWASLEKCRYEVI
NEIFEEALQRDPSNNKEWVVLVDGDPHQIKTFKKLSNKFSVKLTIICDIIHILEYLWKAGKILNDEKKLKLWVSNKLSQILNGKSSFVASGIRRSATCRQ
LKNREAIDSCATYLLNHSKYLKYNEYLEKGYPIATGVIEGACRYLVKDRMDITGARWSLQGAEAVLKLRAIKISGDFSVYWEFYEQQQYIKNHEILYQTP
SVLEN

 

Blast result :
Comments
ISBeg3 is 64% aa similar to ISCasp2.
References
1] ISfinder annotation (2013)
2] Mussmann,M., Hu,F.Z., Richter,M., de Beer,D., Preisler,A., Jorgensen,B.B., Huntemann,M., Glockner,F.O., Amann,R., Koopman,W.J.H., Janto,B., Hogg,J., Boissy,R., Lasken,R.S., Stoodley,P. and Ehrlich,G.D. (2007) Direct submission GenBank.