ISLesp3
- Family ISKra4
- Group ISKra4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_JH993797 | ND | Leptolyngbya sp. | Leptolyngbya sp. PCC 7375 |
DNA section
IS Length : 1385 bp
Ends
IR Length : 19/24
IRL : GGGTATGACCTCACTTGGATGTAAGTTTCCGAGGTTTCGGCTAAAATAAA
IRR : GGGTATGACCTCGGACTGATGTAAAGATAAAATCTAGCCTTCGAGAGAGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCAGTGGAAA | GATTAGAT | AGTCTATAAA | 8 |
DNA sequence
GGGTATGACCTCACTTGGATGTAAGTTTCCGAGGTTTCGGCTAAAATAAAAGTATTGTCTACAGGGCCGTTAACATGCCAGCATCGATTGTTAGTAGTGA
GGCTAATAGTGTCACGATACAGATAACTATTCCCTTTGGCACGACGATGTTAGGCAGCGAGAATGAGATTCAGCAAGGGCTGAATTTAGCCGGTCAACTG
GCGACAGAAAAAGCTCTCGAACAATTCGATAGTGATGGTAGTCCCATTGAACGCTCAGGACAGCGTTGGACGAGCAAAGGCAAGGATGCGAAGGTCTATC
AAAGCCCCTATGGTCCGGTGCAGGTAGCACGTCATCTCTACCAAACGTCCGAGGGTGGGAGTACCTTCTGCCCCTTGGAAACCGATGCGCGCATGATCAG
AACGGCAACCCCTCGCTTTGCTAAACAGATTAGCCACAAATATGCTGAGATGAGCAGTGTGCGGGTGGCAGAAGACCTCAACGAAAATCATGGTCGTGTA
GTGGCCCGTTCGTTTATCCAAAATCTAGCAGACACCGTGGGGACTGTGGCCATGGCAAAAGAGGAGGATTGGCATTATCAGACCCCCAAGGTCTCGGAGC
CGGTAGCAACAGTTAGTCTAGGCCTCGATGGGACCTGTATGTTGTTGTGTGAGGAGGGGGAACGCCAAGCCATGGTCGGTACGTTGAGTTTGTATAACGC
TCAGGGAGAGCGTCTGCATACCACGTACGTAGCTGCCCCGCCTGAATATGGACGACACCTCTTTCTCGACCGGATGTCCCGTGAGGTTGAGCATGTGCTG
AGCCTGTATCCGGATGCGCATCGGCAAGGATTAGCAGATGGTGCGCCTGAAAATTGGGACTTTCTCGGCCCCTATGTCGATTCACAAGTGTTAGATTTCT
ACCATGCCAGTGGCTACTTGGAAACCGTCGCTAAAGTCCTATTTCCTCGACGTCGAAAGCACCGTCAAGCCTGGTTAGAGAAACAAGCTCATCGCTTAAA
ACACGACGTTGGAGCGGCGGTTGCGCTGTTAGATGAGTTTAAAAAAATCGACCTCAATGCCCTCAGTGCCAAGAAAAAAGAACAGATGGAGTCGGTCATC
ACGTATTTTCGCAATCACCACGCTCAAATGGATTACGCTCAAACTCAGGCAGAAAATCGTCCGATTGGGTCGGGAGTCACCGAAGCGGCCTGCAAAGTCA
TCGTCAAGCAACGATTATGTGGGTCTGGGATGAAGTGGAAGGGAACGGGGGCTGGGGTGGTATTAAGTTTGAGAACACTCACGTATACAACAGGCAGATG
GCAACAGTTTTGGACCAAAATTAATCAGTATGGATTCTCTCTCGAAGGCTAGATTTTATCTTTACATCAGTCCGAGGTCATACCC
GGCTAATAGTGTCACGATACAGATAACTATTCCCTTTGGCACGACGATGTTAGGCAGCGAGAATGAGATTCAGCAAGGGCTGAATTTAGCCGGTCAACTG
GCGACAGAAAAAGCTCTCGAACAATTCGATAGTGATGGTAGTCCCATTGAACGCTCAGGACAGCGTTGGACGAGCAAAGGCAAGGATGCGAAGGTCTATC
AAAGCCCCTATGGTCCGGTGCAGGTAGCACGTCATCTCTACCAAACGTCCGAGGGTGGGAGTACCTTCTGCCCCTTGGAAACCGATGCGCGCATGATCAG
AACGGCAACCCCTCGCTTTGCTAAACAGATTAGCCACAAATATGCTGAGATGAGCAGTGTGCGGGTGGCAGAAGACCTCAACGAAAATCATGGTCGTGTA
GTGGCCCGTTCGTTTATCCAAAATCTAGCAGACACCGTGGGGACTGTGGCCATGGCAAAAGAGGAGGATTGGCATTATCAGACCCCCAAGGTCTCGGAGC
CGGTAGCAACAGTTAGTCTAGGCCTCGATGGGACCTGTATGTTGTTGTGTGAGGAGGGGGAACGCCAAGCCATGGTCGGTACGTTGAGTTTGTATAACGC
TCAGGGAGAGCGTCTGCATACCACGTACGTAGCTGCCCCGCCTGAATATGGACGACACCTCTTTCTCGACCGGATGTCCCGTGAGGTTGAGCATGTGCTG
AGCCTGTATCCGGATGCGCATCGGCAAGGATTAGCAGATGGTGCGCCTGAAAATTGGGACTTTCTCGGCCCCTATGTCGATTCACAAGTGTTAGATTTCT
ACCATGCCAGTGGCTACTTGGAAACCGTCGCTAAAGTCCTATTTCCTCGACGTCGAAAGCACCGTCAAGCCTGGTTAGAGAAACAAGCTCATCGCTTAAA
ACACGACGTTGGAGCGGCGGTTGCGCTGTTAGATGAGTTTAAAAAAATCGACCTCAATGCCCTCAGTGCCAAGAAAAAAGAACAGATGGAGTCGGTCATC
ACGTATTTTCGCAATCACCACGCTCAAATGGATTACGCTCAAACTCAGGCAGAAAATCGTCCGATTGGGTCGGGAGTCACCGAAGCGGCCTGCAAAGTCA
TCGTCAAGCAACGATTATGTGGGTCTGGGATGAAGTGGAAGGGAACGGGGGCTGGGGTGGTATTAAGTTTGAGAACACTCACGTATACAACAGGCAGATG
GCAACAGTTTTGGACCAAAATTAATCAGTATGGATTCTCTCTCGAAGGCTAGATTTTATCTTTACATCAGTCCGAGGTCATACCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1278 bp | 425 aa | 75 | 1352 | + | No |
Chemistry : DDE
ORF sequence :
MPASIVSSEANSVTIQITIPFGTTMLGSENEIQQGLNLAGQLATEKALEQFDSDGSPIERSGQRWTSKGKDAKVYQSPYGPVQVARHLYQTSEGGSTFCP
LETDARMIRTATPRFAKQISHKYAEMSSVRVAEDLNENHGRVVARSFIQNLADTVGTVAMAKEEDWHYQTPKVSEPVATVSLGLDGTCMLLCEEGERQAM
VGTLSLYNAQGERLHTTYVAAPPEYGRHLFLDRMSREVEHVLSLYPDAHRQGLADGAPENWDFLGPYVDSQVLDFYHASGYLETVAKVLFPRRRKHRQAW
LEKQAHRLKHDVGAAVALLDEFKKIDLNALSAKKKEQMESVITYFRNHHAQMDYAQTQAENRPIGSGVTEAACKVIVKQRLCGSGMKWKGTGAGVVLSLR
TLTYTTGRWQQFWTKINQYGFSLEG
LETDARMIRTATPRFAKQISHKYAEMSSVRVAEDLNENHGRVVARSFIQNLADTVGTVAMAKEEDWHYQTPKVSEPVATVSLGLDGTCMLLCEEGERQAM
VGTLSLYNAQGERLHTTYVAAPPEYGRHLFLDRMSREVEHVLSLYPDAHRQGLADGAPENWDFLGPYVDSQVLDFYHASGYLETVAKVLFPRRRKHRQAW
LEKQAHRLKHDVGAAVALLDEFKKIDLNALSAKKKEQMESVITYFRNHHAQMDYAQTQAENRPIGSGVTEAACKVIVKQRLCGSGMKWKGTGAGVVLSLR
TLTYTTGRWQQFWTKINQYGFSLEG
Blast result :
Comments
ISLesp3 is 68% aa similar to ISLdr1.
References
1] ISfinder annotation (2013)
2] Kerfeld,C.A., Huntemann,M., Wei,C.-L., Han,J., Detter,J.C., Han,C., Tapia,R., Chen,A., Kyrpides,N., Mavromatis,K., Markowitz,V., Szeto,E., Ivanova,N., Mikhailova,N., Ovchinnikova,G., Pagani,I., Pati,A., Goodwin,L., Nordberg,H.P., Cantor,M.N., Hua,S.X., Woyke,T., Eisen,J. and Klenk,H.-P. (2012) Direct submission GenBank.
2] Kerfeld,C.A., Huntemann,M., Wei,C.-L., Han,J., Detter,J.C., Han,C., Tapia,R., Chen,A., Kyrpides,N., Mavromatis,K., Markowitz,V., Szeto,E., Ivanova,N., Mikhailova,N., Ovchinnikova,G., Pagani,I., Pati,A., Goodwin,L., Nordberg,H.P., Cantor,M.N., Hua,S.X., Woyke,T., Eisen,J. and Klenk,H.-P. (2012) Direct submission GenBank.