ISLesp3

  • Family ISKra4
  • Group ISKra4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_JH993797 ND Leptolyngbya sp.
Leptolyngbya sp. PCC 7375
DNA section
IS Length : 1385 bp

Ends


IR Length : 19/24

IRL : GGGTATGACCTCACTTGGATGTAAGTTTCCGAGGTTTCGGCTAAAATAAA
IRR : GGGTATGACCTCGGACTGATGTAAAGATAAAATCTAGCCTTCGAGAGAGA

Insertion site


Left flankDirect repeatRight flankDR Length
TCAGTGGAAAGATTAGATAGTCTATAAA8

DNA sequence

GGGTATGACCTCACTTGGATGTAAGTTTCCGAGGTTTCGGCTAAAATAAAAGTATTGTCTACAGGGCCGTTAACATGCCAGCATCGATTGTTAGTAGTGA
GGCTAATAGTGTCACGATACAGATAACTATTCCCTTTGGCACGACGATGTTAGGCAGCGAGAATGAGATTCAGCAAGGGCTGAATTTAGCCGGTCAACTG
GCGACAGAAAAAGCTCTCGAACAATTCGATAGTGATGGTAGTCCCATTGAACGCTCAGGACAGCGTTGGACGAGCAAAGGCAAGGATGCGAAGGTCTATC
AAAGCCCCTATGGTCCGGTGCAGGTAGCACGTCATCTCTACCAAACGTCCGAGGGTGGGAGTACCTTCTGCCCCTTGGAAACCGATGCGCGCATGATCAG
AACGGCAACCCCTCGCTTTGCTAAACAGATTAGCCACAAATATGCTGAGATGAGCAGTGTGCGGGTGGCAGAAGACCTCAACGAAAATCATGGTCGTGTA
GTGGCCCGTTCGTTTATCCAAAATCTAGCAGACACCGTGGGGACTGTGGCCATGGCAAAAGAGGAGGATTGGCATTATCAGACCCCCAAGGTCTCGGAGC
CGGTAGCAACAGTTAGTCTAGGCCTCGATGGGACCTGTATGTTGTTGTGTGAGGAGGGGGAACGCCAAGCCATGGTCGGTACGTTGAGTTTGTATAACGC
TCAGGGAGAGCGTCTGCATACCACGTACGTAGCTGCCCCGCCTGAATATGGACGACACCTCTTTCTCGACCGGATGTCCCGTGAGGTTGAGCATGTGCTG
AGCCTGTATCCGGATGCGCATCGGCAAGGATTAGCAGATGGTGCGCCTGAAAATTGGGACTTTCTCGGCCCCTATGTCGATTCACAAGTGTTAGATTTCT
ACCATGCCAGTGGCTACTTGGAAACCGTCGCTAAAGTCCTATTTCCTCGACGTCGAAAGCACCGTCAAGCCTGGTTAGAGAAACAAGCTCATCGCTTAAA
ACACGACGTTGGAGCGGCGGTTGCGCTGTTAGATGAGTTTAAAAAAATCGACCTCAATGCCCTCAGTGCCAAGAAAAAAGAACAGATGGAGTCGGTCATC
ACGTATTTTCGCAATCACCACGCTCAAATGGATTACGCTCAAACTCAGGCAGAAAATCGTCCGATTGGGTCGGGAGTCACCGAAGCGGCCTGCAAAGTCA
TCGTCAAGCAACGATTATGTGGGTCTGGGATGAAGTGGAAGGGAACGGGGGCTGGGGTGGTATTAAGTTTGAGAACACTCACGTATACAACAGGCAGATG
GCAACAGTTTTGGACCAAAATTAATCAGTATGGATTCTCTCTCGAAGGCTAGATTTTATCTTTACATCAGTCCGAGGTCATACCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1278 bp425 aa751352+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPASIVSSEANSVTIQITIPFGTTMLGSENEIQQGLNLAGQLATEKALEQFDSDGSPIERSGQRWTSKGKDAKVYQSPYGPVQVARHLYQTSEGGSTFCP
LETDARMIRTATPRFAKQISHKYAEMSSVRVAEDLNENHGRVVARSFIQNLADTVGTVAMAKEEDWHYQTPKVSEPVATVSLGLDGTCMLLCEEGERQAM
VGTLSLYNAQGERLHTTYVAAPPEYGRHLFLDRMSREVEHVLSLYPDAHRQGLADGAPENWDFLGPYVDSQVLDFYHASGYLETVAKVLFPRRRKHRQAW
LEKQAHRLKHDVGAAVALLDEFKKIDLNALSAKKKEQMESVITYFRNHHAQMDYAQTQAENRPIGSGVTEAACKVIVKQRLCGSGMKWKGTGAGVVLSLR
TLTYTTGRWQQFWTKINQYGFSLEG

 

Blast result :
Comments
ISLesp3 is 68% aa similar to ISLdr1.
References
1] ISfinder annotation (2013)
2] Kerfeld,C.A., Huntemann,M., Wei,C.-L., Han,J., Detter,J.C., Han,C., Tapia,R., Chen,A., Kyrpides,N., Mavromatis,K., Markowitz,V., Szeto,E., Ivanova,N., Mikhailova,N., Ovchinnikova,G., Pagani,I., Pati,A., Goodwin,L., Nordberg,H.P., Cantor,M.N., Hua,S.X., Woyke,T., Eisen,J. and Klenk,H.-P. (2012) Direct submission GenBank.