ISUnCu20

  • Family ISKra4
  • Group ISKra4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
HM454280 ND Uncultured Nitrospirae
Uncultured Nitrospirae bacterium MY2-3C
DNA section
IS Length : 1622 bp

Ends


IR Length : 19/21

IRL : GGGTGCATAAGTTTTTCATGGACAAACATGTGTTAAAAATGATTGTGGAT
IRR : GGGTGCATAAATTTTTGGTGGCGTCAGGCTGCATCCTTTAAATGCGTGAC

Insertion site


Left flankDirect repeatRight flankDR Length
GTTTTTCGGCTTGTCATTA0

DNA sequence

GGGTGCATAAGTTTTTCATGGACAAACATGTGTTAAAAATGATTGTGGATTCTAAAATGGGTGCCCCTTGCGGGTGGGGTTGAGGCAGAGCCCTCCCCTT
TTCCCAAGATGTCCATTGATTTTTATGCGCCCTTTTCGGGCTTGAATGCGACTTGTATGAGGTCATCAAACTGCTTTTATGGTTGACTTGTCATGGGTGC
ATAAGAAAGTGGTGGCGGTTTTTTTAGCCCTCACAAATGTTTTAGAATATATATAGATCAAAGACCTAAAACACTGGAGGGCTATATGAATAATATAACA
AACACAGGAGAAGAAACAAGGCTTAGGCCGACCTCGGATTTAGAAGATATGTTAAAAGGTGCTGTACAAACAATGGTGGGAGATGTTTTTGATATAAACA
CGTTGGAAAGCAATTTAACAGAATTGTTCATGATACTTCGCAAAAAGGTGACGGAGGAAATATTCCACCAAATAGATGTTGAGCATATGGAGTGTAAAGA
ATGTGGAAACAAGATGAAGAACAAGGGTAAAAAACACAGAAAAATAAAGGGCTTAGTAGACTACGATATACATGTCAGGGTGTTTTATTGTGACAAGTGT
GAGCGTTATGAAAGACCATTAGATAAGATAATAGGCAATACTGGACGAATCACATTAGAGGTTAAAGAAGCGATGGTGTTGTTAGGTCAGCGGATACCAT
TTGAAGAGGCTAGTTCTTACATGGAAAAGTTATTAAAAGTGGGGATAAGTCATGAAAGTATACAGGAATTGCTGGAGGGCATAGGAGAAAAGATATCAAA
AGAGGAAGAGGAATTGATAGCAGATGAGATAGATGCCAATGGCTATGTGAAAGATTGGAAAGATGGTAAACCAATCAATGATATAGCATACATGGAATTA
GACGGCAGTATGGTACAAACAAGAGAAGATGATTGGAAAGAAGTAAGAGTTGGAGTTATATTTGCAGAAAAAGACAGATTAGAAGTAGATAAAAACCATA
ATGAGTTGTATCGCAAGAAATATTTCTCGGTATTTAATGATGACAAGAATTCTCTTGCGGAGTTTAAGAATAGGGCTACTTTAGAGGCATACAACTTTGG
ATTTCACAATTATGTAAAACATGTTATTGTTGGAGATGGTGCACCGTGGATATGGGATTATGCTTCTACATATCACCCTGGAGCTATTCAGGTATTAGAC
TACTATCATGCGAGTGAATATCTATGCAATGCAATAAATGCCGTTCAGCTTAAAGACGAAGGACAAAGCAAACAATTAAAAGATTGGTTATGGGAAGGTA
AAATTGAGGAGATAATCAAGTCTTTGGAAAAAGTGCCAAAATGCAAAGAAATTGAAGATTGTTTACGTTATTATCGTAAAAACAGTTCAAGGATGAAGTA
CGGTGAGTATAGAAAAGAAGGTGTTGATATAGGCAGTGGAGTTATAGAAAGCGCGCACCGTGTTGTAGTACAAGTACGAATGAAACAATCCGGTATGCAT
TGGAACAAGAAAAACGTTCAACCTATTGTATCACTAAGAGCATTATATCTATCAGGACGATGGAGTAATATTGTCACGCATTTAAAGGATGCAGCCTGAC
GCCACCAAAAATTTATGCACCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1314 bp437 aa2861599+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNNITNTGEETRLRPTSDLEDMLKGAVQTMVGDVFDINTLESNLTELFMILRKKVTEEIFHQIDVEHMECKECGNKMKNKGKKHRKIKGLVDYDIHVRVF
YCDKCERYERPLDKIIGNTGRITLEVKEAMVLLGQRIPFEEASSYMEKLLKVGISHESIQELLEGIGEKISKEEEELIADEIDANGYVKDWKDGKPINDI
AYMELDGSMVQTREDDWKEVRVGVIFAEKDRLEVDKNHNELYRKKYFSVFNDDKNSLAEFKNRATLEAYNFGFHNYVKHVIVGDGAPWIWDYASTYHPGA
IQVLDYYHASEYLCNAINAVQLKDEGQSKQLKDWLWEGKIEEIIKSLEKVPKCKEIEDCLRYYRKNSSRMKYGEYRKEGVDIGSGVIESAHRVVVQVRMK
QSGMHWNKKNVQPIVSLRALYLSGRWSNIVTHLKDAA

 

Blast result :
Comments
ISUnCu20 is 46% aa similar to ISKra4.
References
1] ISfinder annotation (2013)
2] Lin,W., Jogler,C., Schuler,D. and Pan,Y. (2011) Appl. Environ. Microbiol. 77 (1), 323-326.