ISUnCu20
- Family ISKra4
- Group ISKra4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
HM454280 | ND | Uncultured Nitrospirae | Uncultured Nitrospirae bacterium MY2-3C |
DNA section
IS Length : 1622 bp
Ends
IR Length : 19/21
IRL : GGGTGCATAAGTTTTTCATGGACAAACATGTGTTAAAAATGATTGTGGAT
IRR : GGGTGCATAAATTTTTGGTGGCGTCAGGCTGCATCCTTTAAATGCGTGAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTTTTTCGG | CTTGTCATTA | 0 |
DNA sequence
GGGTGCATAAGTTTTTCATGGACAAACATGTGTTAAAAATGATTGTGGATTCTAAAATGGGTGCCCCTTGCGGGTGGGGTTGAGGCAGAGCCCTCCCCTT
TTCCCAAGATGTCCATTGATTTTTATGCGCCCTTTTCGGGCTTGAATGCGACTTGTATGAGGTCATCAAACTGCTTTTATGGTTGACTTGTCATGGGTGC
ATAAGAAAGTGGTGGCGGTTTTTTTAGCCCTCACAAATGTTTTAGAATATATATAGATCAAAGACCTAAAACACTGGAGGGCTATATGAATAATATAACA
AACACAGGAGAAGAAACAAGGCTTAGGCCGACCTCGGATTTAGAAGATATGTTAAAAGGTGCTGTACAAACAATGGTGGGAGATGTTTTTGATATAAACA
CGTTGGAAAGCAATTTAACAGAATTGTTCATGATACTTCGCAAAAAGGTGACGGAGGAAATATTCCACCAAATAGATGTTGAGCATATGGAGTGTAAAGA
ATGTGGAAACAAGATGAAGAACAAGGGTAAAAAACACAGAAAAATAAAGGGCTTAGTAGACTACGATATACATGTCAGGGTGTTTTATTGTGACAAGTGT
GAGCGTTATGAAAGACCATTAGATAAGATAATAGGCAATACTGGACGAATCACATTAGAGGTTAAAGAAGCGATGGTGTTGTTAGGTCAGCGGATACCAT
TTGAAGAGGCTAGTTCTTACATGGAAAAGTTATTAAAAGTGGGGATAAGTCATGAAAGTATACAGGAATTGCTGGAGGGCATAGGAGAAAAGATATCAAA
AGAGGAAGAGGAATTGATAGCAGATGAGATAGATGCCAATGGCTATGTGAAAGATTGGAAAGATGGTAAACCAATCAATGATATAGCATACATGGAATTA
GACGGCAGTATGGTACAAACAAGAGAAGATGATTGGAAAGAAGTAAGAGTTGGAGTTATATTTGCAGAAAAAGACAGATTAGAAGTAGATAAAAACCATA
ATGAGTTGTATCGCAAGAAATATTTCTCGGTATTTAATGATGACAAGAATTCTCTTGCGGAGTTTAAGAATAGGGCTACTTTAGAGGCATACAACTTTGG
ATTTCACAATTATGTAAAACATGTTATTGTTGGAGATGGTGCACCGTGGATATGGGATTATGCTTCTACATATCACCCTGGAGCTATTCAGGTATTAGAC
TACTATCATGCGAGTGAATATCTATGCAATGCAATAAATGCCGTTCAGCTTAAAGACGAAGGACAAAGCAAACAATTAAAAGATTGGTTATGGGAAGGTA
AAATTGAGGAGATAATCAAGTCTTTGGAAAAAGTGCCAAAATGCAAAGAAATTGAAGATTGTTTACGTTATTATCGTAAAAACAGTTCAAGGATGAAGTA
CGGTGAGTATAGAAAAGAAGGTGTTGATATAGGCAGTGGAGTTATAGAAAGCGCGCACCGTGTTGTAGTACAAGTACGAATGAAACAATCCGGTATGCAT
TGGAACAAGAAAAACGTTCAACCTATTGTATCACTAAGAGCATTATATCTATCAGGACGATGGAGTAATATTGTCACGCATTTAAAGGATGCAGCCTGAC
GCCACCAAAAATTTATGCACCC
TTCCCAAGATGTCCATTGATTTTTATGCGCCCTTTTCGGGCTTGAATGCGACTTGTATGAGGTCATCAAACTGCTTTTATGGTTGACTTGTCATGGGTGC
ATAAGAAAGTGGTGGCGGTTTTTTTAGCCCTCACAAATGTTTTAGAATATATATAGATCAAAGACCTAAAACACTGGAGGGCTATATGAATAATATAACA
AACACAGGAGAAGAAACAAGGCTTAGGCCGACCTCGGATTTAGAAGATATGTTAAAAGGTGCTGTACAAACAATGGTGGGAGATGTTTTTGATATAAACA
CGTTGGAAAGCAATTTAACAGAATTGTTCATGATACTTCGCAAAAAGGTGACGGAGGAAATATTCCACCAAATAGATGTTGAGCATATGGAGTGTAAAGA
ATGTGGAAACAAGATGAAGAACAAGGGTAAAAAACACAGAAAAATAAAGGGCTTAGTAGACTACGATATACATGTCAGGGTGTTTTATTGTGACAAGTGT
GAGCGTTATGAAAGACCATTAGATAAGATAATAGGCAATACTGGACGAATCACATTAGAGGTTAAAGAAGCGATGGTGTTGTTAGGTCAGCGGATACCAT
TTGAAGAGGCTAGTTCTTACATGGAAAAGTTATTAAAAGTGGGGATAAGTCATGAAAGTATACAGGAATTGCTGGAGGGCATAGGAGAAAAGATATCAAA
AGAGGAAGAGGAATTGATAGCAGATGAGATAGATGCCAATGGCTATGTGAAAGATTGGAAAGATGGTAAACCAATCAATGATATAGCATACATGGAATTA
GACGGCAGTATGGTACAAACAAGAGAAGATGATTGGAAAGAAGTAAGAGTTGGAGTTATATTTGCAGAAAAAGACAGATTAGAAGTAGATAAAAACCATA
ATGAGTTGTATCGCAAGAAATATTTCTCGGTATTTAATGATGACAAGAATTCTCTTGCGGAGTTTAAGAATAGGGCTACTTTAGAGGCATACAACTTTGG
ATTTCACAATTATGTAAAACATGTTATTGTTGGAGATGGTGCACCGTGGATATGGGATTATGCTTCTACATATCACCCTGGAGCTATTCAGGTATTAGAC
TACTATCATGCGAGTGAATATCTATGCAATGCAATAAATGCCGTTCAGCTTAAAGACGAAGGACAAAGCAAACAATTAAAAGATTGGTTATGGGAAGGTA
AAATTGAGGAGATAATCAAGTCTTTGGAAAAAGTGCCAAAATGCAAAGAAATTGAAGATTGTTTACGTTATTATCGTAAAAACAGTTCAAGGATGAAGTA
CGGTGAGTATAGAAAAGAAGGTGTTGATATAGGCAGTGGAGTTATAGAAAGCGCGCACCGTGTTGTAGTACAAGTACGAATGAAACAATCCGGTATGCAT
TGGAACAAGAAAAACGTTCAACCTATTGTATCACTAAGAGCATTATATCTATCAGGACGATGGAGTAATATTGTCACGCATTTAAAGGATGCAGCCTGAC
GCCACCAAAAATTTATGCACCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1314 bp | 437 aa | 286 | 1599 | + | No |
Chemistry : DDE
ORF sequence :
MNNITNTGEETRLRPTSDLEDMLKGAVQTMVGDVFDINTLESNLTELFMILRKKVTEEIFHQIDVEHMECKECGNKMKNKGKKHRKIKGLVDYDIHVRVF
YCDKCERYERPLDKIIGNTGRITLEVKEAMVLLGQRIPFEEASSYMEKLLKVGISHESIQELLEGIGEKISKEEEELIADEIDANGYVKDWKDGKPINDI
AYMELDGSMVQTREDDWKEVRVGVIFAEKDRLEVDKNHNELYRKKYFSVFNDDKNSLAEFKNRATLEAYNFGFHNYVKHVIVGDGAPWIWDYASTYHPGA
IQVLDYYHASEYLCNAINAVQLKDEGQSKQLKDWLWEGKIEEIIKSLEKVPKCKEIEDCLRYYRKNSSRMKYGEYRKEGVDIGSGVIESAHRVVVQVRMK
QSGMHWNKKNVQPIVSLRALYLSGRWSNIVTHLKDAA
YCDKCERYERPLDKIIGNTGRITLEVKEAMVLLGQRIPFEEASSYMEKLLKVGISHESIQELLEGIGEKISKEEEELIADEIDANGYVKDWKDGKPINDI
AYMELDGSMVQTREDDWKEVRVGVIFAEKDRLEVDKNHNELYRKKYFSVFNDDKNSLAEFKNRATLEAYNFGFHNYVKHVIVGDGAPWIWDYASTYHPGA
IQVLDYYHASEYLCNAINAVQLKDEGQSKQLKDWLWEGKIEEIIKSLEKVPKCKEIEDCLRYYRKNSSRMKYGEYRKEGVDIGSGVIESAHRVVVQVRMK
QSGMHWNKKNVQPIVSLRALYLSGRWSNIVTHLKDAA
Blast result :
Comments
ISUnCu20 is 46% aa similar to ISKra4.
References
1] ISfinder annotation (2013)
2] Lin,W., Jogler,C., Schuler,D. and Pan,Y. (2011) Appl. Environ. Microbiol. 77 (1), 323-326.
2] Lin,W., Jogler,C., Schuler,D. and Pan,Y. (2011) Appl. Environ. Microbiol. 77 (1), 323-326.