ISCysp26
- Family ISKra4
- Group ISMich2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAXW01000006 | ND | Cyanothece sp. | Cyanothece sp. CCY0110 |
DNA section
IS Length : 1758 bp
Ends
IR Length : 20
IRL : GGGAGCATCCCATTTTTGTATTTAGACTGTTTAATACGATGCAAATACTT
IRR : GGGAGCATCCCATTTTTGTAGAAACAAAGCATTATTCGCGGAAACTATTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTTTTTTAAT | TCTTTTTG | TGCTGATTTT | 8 |
DNA sequence
GGGAGCATCCCATTTTTGTATTTAGACTGTTTAATACGATGCAAATACTTCGCGAAGAACCATCGCGAATAAGTTTAAATGTTTATGCAATCGAATTAAT
TCTGACATAATGGGGGTGTAAACATTGAAGATTATCCCGTTATGACTCCATCAGAAAGACTTGAGTTAGAAGCCTGTATTAACAGAGCCAGTGAAATACT
TTATAATAATGTTGAAGAAGAATCTTTAAAGACTCTTGAAGATATTGAAATTACTGTAAGGGAGCAGGTTTTAGAGAATGTTAGTCCTCAAATCACCCTT
TTTTTATTGAAAGAAAAACAAAAACGAGAAAAGGAAGAAAGCGAAAAATAAAAAGTTGTGTGGGACAGTTAAAAATTACTGCATCTCAATGTAATCGGTT
GGGTGTTAGTTCCTATACTCGTCATAGTCCCCTCTTAGAAAAGTGTTGTTTACTGTTAAGTGCTAACGAATCTTATCAAAATGCTGAAGAGGATATGTTA
TTATTAATGGGCTTTAAAGTGGGGCATTCAACTCATCACCGAAAAGTCCAAAAACTAGATAATTTATTACCAGATGTTAAACAAGGTTGTAGTGAGATAT
CTGTTGATGGAGGAAAAATTAGGTTAAGAGGAAAAAAGGGACAAAAAAGTTATTGGAAAGATTATAAAACGGCGAGATTACAAGGAATCTATTACGGTGC
TTTTTTTCAGGATAATCAATCTTTAGTCGATTGGATTAATAGCCAAGAATTAACCAATCCACTTTATTGTTTAGGAGATGGACATGATGGAATATGGAAT
ATAATGGCTGAAATTGGAGATAAAGAAAATAGGATTGAGATTTTGGATTGGTATCATTTAATAGAAAATCTCTACAAAGTTGAAGGGAAAAGATACCAGT
TTGAACAAATTAAGGCTTATTTATGGATGGGGCAGACCTCAGAGGCGATTAGCTATCTACGTGACCAGAACCCAGTGGGGAGTAATCAGTTTTGCAACTA
TCTAATTAAACGGAAATCTCGCATCATTAATTACCATTATTATAGCTGGCAAAAAATTTGTTCAATCGGTAGCGGGGCTGTAGAATCGGCGGTTAAACAA
ATAGCTCACCGCGTCAAAATAACCGGCGCACAGTGGAAATATGAAACCGTTAATAATATTCTACAACTGCGTTGTGCTTATCTCAATGGTCAACTAGCTA
TTTAAAACGGATAAAATTGTAAAAGTTAAATAAGTTGCTTATTAATTCGCGTATTATAATGGCGAATTACTTCAACATGGGGTTTAATATTGATGGGACG
CAAAAAATATATCGAGAGTGAGCAAGATAAATTAGATAGAATGCAGAGATTAACCGAAGCTATTGCTGAAATAGAGTCATATTTGCAGTTTTTTGAGGAT
AAGGGAGAACAAGCTGATAGTGGTTGTTGGGTCGTTCGTTATCAAGTGAGGCAAAAAGACAAAATTTATTGGTATTACAAGTTACAAGCAGATAGACGTA
TATTTGAGCAGAAAAACAGTCAATCTCTTAGCAAATACCAACATTTAGGCAAAGCTGGTACAATTGCCCATGTCGATGCTGTCATGGGAGTCCTCAGACG
GACTATCATCACCGAATTAGAGTCTACCTTGATTTCTCTGAAAAGCTGTGTAGTTGATATCGCTTATGATGAAGAACATAAAAGTAGATAACTAGAAATT
TATTTCGCGAATAGTTTCCGCGAATAATGCTTTGTTTCTACAAAAATGGGATGCTCCC
TCTGACATAATGGGGGTGTAAACATTGAAGATTATCCCGTTATGACTCCATCAGAAAGACTTGAGTTAGAAGCCTGTATTAACAGAGCCAGTGAAATACT
TTATAATAATGTTGAAGAAGAATCTTTAAAGACTCTTGAAGATATTGAAATTACTGTAAGGGAGCAGGTTTTAGAGAATGTTAGTCCTCAAATCACCCTT
TTTTTATTGAAAGAAAAACAAAAACGAGAAAAGGAAGAAAGCGAAAAATAAAAAGTTGTGTGGGACAGTTAAAAATTACTGCATCTCAATGTAATCGGTT
GGGTGTTAGTTCCTATACTCGTCATAGTCCCCTCTTAGAAAAGTGTTGTTTACTGTTAAGTGCTAACGAATCTTATCAAAATGCTGAAGAGGATATGTTA
TTATTAATGGGCTTTAAAGTGGGGCATTCAACTCATCACCGAAAAGTCCAAAAACTAGATAATTTATTACCAGATGTTAAACAAGGTTGTAGTGAGATAT
CTGTTGATGGAGGAAAAATTAGGTTAAGAGGAAAAAAGGGACAAAAAAGTTATTGGAAAGATTATAAAACGGCGAGATTACAAGGAATCTATTACGGTGC
TTTTTTTCAGGATAATCAATCTTTAGTCGATTGGATTAATAGCCAAGAATTAACCAATCCACTTTATTGTTTAGGAGATGGACATGATGGAATATGGAAT
ATAATGGCTGAAATTGGAGATAAAGAAAATAGGATTGAGATTTTGGATTGGTATCATTTAATAGAAAATCTCTACAAAGTTGAAGGGAAAAGATACCAGT
TTGAACAAATTAAGGCTTATTTATGGATGGGGCAGACCTCAGAGGCGATTAGCTATCTACGTGACCAGAACCCAGTGGGGAGTAATCAGTTTTGCAACTA
TCTAATTAAACGGAAATCTCGCATCATTAATTACCATTATTATAGCTGGCAAAAAATTTGTTCAATCGGTAGCGGGGCTGTAGAATCGGCGGTTAAACAA
ATAGCTCACCGCGTCAAAATAACCGGCGCACAGTGGAAATATGAAACCGTTAATAATATTCTACAACTGCGTTGTGCTTATCTCAATGGTCAACTAGCTA
TTTAAAACGGATAAAATTGTAAAAGTTAAATAAGTTGCTTATTAATTCGCGTATTATAATGGCGAATTACTTCAACATGGGGTTTAATATTGATGGGACG
CAAAAAATATATCGAGAGTGAGCAAGATAAATTAGATAGAATGCAGAGATTAACCGAAGCTATTGCTGAAATAGAGTCATATTTGCAGTTTTTTGAGGAT
AAGGGAGAACAAGCTGATAGTGGTTGTTGGGTCGTTCGTTATCAAGTGAGGCAAAAAGACAAAATTTATTGGTATTACAAGTTACAAGCAGATAGACGTA
TATTTGAGCAGAAAAACAGTCAATCTCTTAGCAAATACCAACATTTAGGCAAAGCTGGTACAATTGCCCATGTCGATGCTGTCATGGGAGTCCTCAGACG
GACTATCATCACCGAATTAGAGTCTACCTTGATTTCTCTGAAAAGCTGTGTAGTTGATATCGCTTATGATGAAGAACATAAAAGTAGATAACTAGAAATT
TATTTCGCGAATAGTTTCCGCGAATAATGCTTTGTTTCTACAAAAATGGGATGCTCCC
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 4
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
210 bp | 69 aa | 142 | 351 | + | No |
Description : First part of the transposase
ORF sequence :
MTPSERLELEACINRASEILYNNVEEESLKTLEDIEITVREQVLENVSPQITLFLLKEKQKREKEESEK
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
921 bp | 306 aa | 285 | 1205 | + | No |
Description : Second part of the transposase
ORF sequence :
SSNHPFFIERKTKTRKGRKRKIKSCVGQLKITASQCNRLGVSSYTRHSPLLEKCCLLLSANESYQNAEEDMLLLMGFKVGHSTHHRKVQKLDNLLPDVKQ
GCSEISVDGGKIRLRGKKGQKSYWKDYKTARLQGIYYGAFFQDNQSLVDWINSQELTNPLYCLGDGHDGIWNIMAEIGDKENRIEILDWYHLIENLYKVE
GKRYQFEQIKAYLWMGQTSEAISYLRDQNPVGSNQFCNYLIKRKSRIINYHYYSWQKICSIGSGAVESAVKQIAHRVKITGAQWKYETVNNILQLRCAYL
NGQLAI
GCSEISVDGGKIRLRGKKGQKSYWKDYKTARLQGIYYGAFFQDNQSLVDWINSQELTNPLYCLGDGHDGIWNIMAEIGDKENRIEILDWYHLIENLYKVE
GKRYQFEQIKAYLWMGQTSEAISYLRDQNPVGSNQFCNYLIKRKSRIINYHYYSWQKICSIGSGAVESAVKQIAHRVKITGAQWKYETVNNILQLRCAYL
NGQLAI
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1064 bp | 354 aa | 142 | 1205 | + | Yes |
Chemistry : DDE
ORF sequence :
MTPSERLELEACINRASEILYNNVEEESLKTLEDIEITVREQVLENVSPQITLFFIERKTKTRKGRKRKIKSCVGQLKITASQCNRLGVSSYTRHSPLLE
KCCLLLSANESYQNAEEDMLLLMGFKVGHSTHHRKVQKLDNLLPDVKQGCSEISVDGGKIRLRGKKGQKSYWKDYKTARLQGIYYGAFFQDNQSLVDWIN
SQELTNPLYCLGDGHDGIWNIMAEIGDKENRIEILDWYHLIENLYKVEGKRYQFEQIKAYLWMGQTSEAISYLRDQNPVGSNQFCNYLIKRKSRIINYHY
YSWQKICSIGSGAVESAVKQIAHRVKITGAQWKYETVNNILQLRCAYLNGQLAI
KCCLLLSANESYQNAEEDMLLLMGFKVGHSTHHRKVQKLDNLLPDVKQGCSEISVDGGKIRLRGKKGQKSYWKDYKTARLQGIYYGAFFQDNQSLVDWIN
SQELTNPLYCLGDGHDGIWNIMAEIGDKENRIEILDWYHLIENLYKVEGKRYQFEQIKAYLWMGQTSEAISYLRDQNPVGSNQFCNYLIKRKSRIINYHY
YSWQKICSIGSGAVESAVKQIAHRVKITGAQWKYETVNNILQLRCAYLNGQLAI
Blast result :ORF 4
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
399 bp | 132 aa | 1293 | 1691 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MGRKKYIESEQDKLDRMQRLTEAIAEIESYLQFFEDKGEQADSGCWVVRYQVRQKDKIYWYYKLQADRRIFEQKNSQSLSKYQHLGKAGTIAHVDAVMGV
LRRTIITELESTLISLKSCVVDIAYDEEHKSR
LRRTIITELESTLISLKSCVVDIAYDEEHKSR
Blast result :
Comments
ISCysp26 is 74% aa similar to ISMic1.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
ORF4 is a passenger gene annotated as hypothetical protein.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
ORF4 is a passenger gene annotated as hypothetical protein.
References
1] ISfinder annotation (2013)
2] Stal,L., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.
2] Stal,L., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.