ISLfe2

  • Family ISKra4
  • Group ISKra4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
GG693875 ND Leptospirillum ferrodiazotrophum
Leptospirillum ferrodiazotrophum
DNA section
IS Length : 1803 bp

Ends


IR Length : 23

IRL : GGGTGAGCGACAAATTTTAGGACGCGTCTCCAGTCAAAGATCTTTTGAAC
IRR : GGGTGAGCGACAAATTTTAGGACTTTGACTTGTCGTCTTAAGCGATTGTT

Insertion site


Left flankDirect repeatRight flankDR Length
CAATCGGCGAGGATGGCGTT0

DNA sequence

GGGTGAGCGACAAATTTTAGGACGCGTCTCCAGTCAAAGATCTTTTGAACGACATCGCCCGCAGAACATTGACTGACATACATGTTGATGGCCACGCAAG
AGGCGCTGGACATTCCTGTACAATTTTGTTATGGATAGAAGGATGTTGGAAAAAATTCCCCCCTTCTTCCATAGGAGCGTTCCATGAGCCCTCGAAAAAG
ACCCCCCACGGACCCGACATCCTCCCCGGCCGATCAGGCCCAGGAAACTCTTCTCGCCATGGAGGTGGCCTTGCGTCAGAAGATTGGAGAAGCCCCGGAG
GGATCTGAAGAAAAGAGTCATCTTCAGGAGCTCCTCTCTCTTCTTTCTGGGCAAAAGACTCCCGAGGCTCCCCCCACGGCCTCAAAAGTCCCCACCCCCT
CGTTTGCCTCGATCCTCGAGGAGATGGGCGTGCCGATGATCCGCTCCTCCCGGCGATTGGATTTCGGGGCCATGGAAAGGGCCATGAAAGACCGGATGCT
CGAAGAGACTGCCCGAACCCTCGAGTCTCGCCTCAACGAGGAGATCACACGCCACCCGGCCCCCTTCCTCTGTCCGGCCTGCGGGCGCCCCCTCCAGAGC
AAGGGCATGAAGTCCAAGACCTTTATGACGTCGTTCGGAGAGGTCACGCTCCGACGGCGTTACGGGTTTTGTCGCTCCTGCCGGAAGGGGTGCTTCCCCG
ACGATGCCCGCCTGGGACTCGACGCCACAGGATTCTCTCCCGAGGTTCAGTATCTGGCCGGCCTCTTTGGAGCCGAGACGGACTTTCTGGAAGCGAGCAC
CCTGCTGTTTTGCGCCGCCCGGATCCGGCTTCCGGAAAAGCAGGTCGAGCGGCTCGCCAAGTCCCTCGGGGAGCTGATCGACCAAGACGAACGGGAGCAT
GTCGACCTCGAGCCTCACCGCCTTCCCCAAGGTCCCCTTTATATCGGCATGGATGGGACCGGGGTCCCGATGCAGTCGCGCGAGACAGCCGGGAGAAAAG
GCAAACAGAAAGACGGCTCGTCCAAGACGCGCGAGGCCAAGATGATCGACATCTGGGAGGCCAATACGCAAAACGAGCGGGGAATCCCGATCCGGGATCC
CGGATCGGTCTCCTACTCGGCGGCCATCGAAAGCGCCTCCTGCCCGGACGTCGGTCGGGAGCTCTCGGACTTTGCCAGGCGGGTCGAACGCGAGGCCACA
CGACGAGGGGCCGCACAAGCCCGGCAGATTGTCGTCATCGGCGATGGAGCGGCCTGGATCTGGAAAACCGCCGAATACCTCTTTCCCGGAGCTCTCTGCA
TTGTGGACCGCTTCCACGCCAAGCAGCACCTCTCCGAACTCTCGCATGCCCTTTTCGGCGACTCTCCCAAGGCCGAAGAATGGAGACATTGTCGTTACGA
GGAGCTCGATGAAGGTCGGATGGACGATCTGCTCAAGGAGATCGGAATCTATGCCTCACGCTTCCCGGAAGCCGAGCAATGTCGGACTTATTTTCAGAAC
AACCGGGAGCGAATGCGCTACCCGGAGTTCCGGGCCCGGGGGCTCTGTACCTCAAGTGGCGTCGTCGAGGCGGGCTGCAAGTCGATCGTCGGGAGCCGCC
TCAAAAAGTCGGGCATGCATTGGAGCGTCACCGGAGCGAATGCCATCCTGGCCCTCCGGTGCACGATCAAGAGCGGACGCTACGAGTCGTTCTGGGAACG
TAAAGCCAGACAATGGGCAGCCTGAATGGAAACATGCAACATAATGAAACAAAAACAATCGCTTAAGACGACAAGTCAAAGTCCTAAAATTTGTCGCTCA
CCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1542 bp513 aa1841725+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSPRKRPPTDPTSSPADQAQETLLAMEVALRQKIGEAPEGSEEKSHLQELLSLLSGQKTPEAPPTASKVPTPSFASILEEMGVPMIRSSRRLDFGAMERA
MKDRMLEETARTLESRLNEEITRHPAPFLCPACGRPLQSKGMKSKTFMTSFGEVTLRRRYGFCRSCRKGCFPDDARLGLDATGFSPEVQYLAGLFGAETD
FLEASTLLFCAARIRLPEKQVERLAKSLGELIDQDEREHVDLEPHRLPQGPLYIGMDGTGVPMQSRETAGRKGKQKDGSSKTREAKMIDIWEANTQNERG
IPIRDPGSVSYSAAIESASCPDVGRELSDFARRVEREATRRGAAQARQIVVIGDGAAWIWKTAEYLFPGALCIVDRFHAKQHLSELSHALFGDSPKAEEW
RHCRYEELDEGRMDDLLKEIGIYASRFPEAEQCRTYFQNNRERMRYPEFRARGLCTSSGVVEAGCKSIVGSRLKKSGMHWSVTGANAILALRCTIKSGRY
ESFWERKARQWAA

 

Blast result :
Comments
ISLfe2 is 94% aa similar to ISLfe1.
References
1] ISfinder annotation (2013)
2] Goltsman,D.S., Denef,V.J., Singer,S.W., VerBerkmoes,N.C., Lefsrud,M., Mueller,R.S., Dick,G.J., Sun,C.L., Wheeler,K.E., Zemla,A., Baker,B.J., Hauser,L., Land,M., Shah,M.B., Thelen,M.P., Hettich,R.L. and Banfield,J.F. (2009) Appl. Environ. Microbiol. 75 (13), 4599-4615.