ISLfe2
- Family ISKra4
- Group ISKra4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
GG693875 | ND | Leptospirillum ferrodiazotrophum | Leptospirillum ferrodiazotrophum |
DNA section
IS Length : 1803 bp
Ends
IR Length : 23
IRL : GGGTGAGCGACAAATTTTAGGACGCGTCTCCAGTCAAAGATCTTTTGAAC
IRR : GGGTGAGCGACAAATTTTAGGACTTTGACTTGTCGTCTTAAGCGATTGTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CAATCGGCGA | GGATGGCGTT | 0 |
DNA sequence
GGGTGAGCGACAAATTTTAGGACGCGTCTCCAGTCAAAGATCTTTTGAACGACATCGCCCGCAGAACATTGACTGACATACATGTTGATGGCCACGCAAG
AGGCGCTGGACATTCCTGTACAATTTTGTTATGGATAGAAGGATGTTGGAAAAAATTCCCCCCTTCTTCCATAGGAGCGTTCCATGAGCCCTCGAAAAAG
ACCCCCCACGGACCCGACATCCTCCCCGGCCGATCAGGCCCAGGAAACTCTTCTCGCCATGGAGGTGGCCTTGCGTCAGAAGATTGGAGAAGCCCCGGAG
GGATCTGAAGAAAAGAGTCATCTTCAGGAGCTCCTCTCTCTTCTTTCTGGGCAAAAGACTCCCGAGGCTCCCCCCACGGCCTCAAAAGTCCCCACCCCCT
CGTTTGCCTCGATCCTCGAGGAGATGGGCGTGCCGATGATCCGCTCCTCCCGGCGATTGGATTTCGGGGCCATGGAAAGGGCCATGAAAGACCGGATGCT
CGAAGAGACTGCCCGAACCCTCGAGTCTCGCCTCAACGAGGAGATCACACGCCACCCGGCCCCCTTCCTCTGTCCGGCCTGCGGGCGCCCCCTCCAGAGC
AAGGGCATGAAGTCCAAGACCTTTATGACGTCGTTCGGAGAGGTCACGCTCCGACGGCGTTACGGGTTTTGTCGCTCCTGCCGGAAGGGGTGCTTCCCCG
ACGATGCCCGCCTGGGACTCGACGCCACAGGATTCTCTCCCGAGGTTCAGTATCTGGCCGGCCTCTTTGGAGCCGAGACGGACTTTCTGGAAGCGAGCAC
CCTGCTGTTTTGCGCCGCCCGGATCCGGCTTCCGGAAAAGCAGGTCGAGCGGCTCGCCAAGTCCCTCGGGGAGCTGATCGACCAAGACGAACGGGAGCAT
GTCGACCTCGAGCCTCACCGCCTTCCCCAAGGTCCCCTTTATATCGGCATGGATGGGACCGGGGTCCCGATGCAGTCGCGCGAGACAGCCGGGAGAAAAG
GCAAACAGAAAGACGGCTCGTCCAAGACGCGCGAGGCCAAGATGATCGACATCTGGGAGGCCAATACGCAAAACGAGCGGGGAATCCCGATCCGGGATCC
CGGATCGGTCTCCTACTCGGCGGCCATCGAAAGCGCCTCCTGCCCGGACGTCGGTCGGGAGCTCTCGGACTTTGCCAGGCGGGTCGAACGCGAGGCCACA
CGACGAGGGGCCGCACAAGCCCGGCAGATTGTCGTCATCGGCGATGGAGCGGCCTGGATCTGGAAAACCGCCGAATACCTCTTTCCCGGAGCTCTCTGCA
TTGTGGACCGCTTCCACGCCAAGCAGCACCTCTCCGAACTCTCGCATGCCCTTTTCGGCGACTCTCCCAAGGCCGAAGAATGGAGACATTGTCGTTACGA
GGAGCTCGATGAAGGTCGGATGGACGATCTGCTCAAGGAGATCGGAATCTATGCCTCACGCTTCCCGGAAGCCGAGCAATGTCGGACTTATTTTCAGAAC
AACCGGGAGCGAATGCGCTACCCGGAGTTCCGGGCCCGGGGGCTCTGTACCTCAAGTGGCGTCGTCGAGGCGGGCTGCAAGTCGATCGTCGGGAGCCGCC
TCAAAAAGTCGGGCATGCATTGGAGCGTCACCGGAGCGAATGCCATCCTGGCCCTCCGGTGCACGATCAAGAGCGGACGCTACGAGTCGTTCTGGGAACG
TAAAGCCAGACAATGGGCAGCCTGAATGGAAACATGCAACATAATGAAACAAAAACAATCGCTTAAGACGACAAGTCAAAGTCCTAAAATTTGTCGCTCA
CCC
AGGCGCTGGACATTCCTGTACAATTTTGTTATGGATAGAAGGATGTTGGAAAAAATTCCCCCCTTCTTCCATAGGAGCGTTCCATGAGCCCTCGAAAAAG
ACCCCCCACGGACCCGACATCCTCCCCGGCCGATCAGGCCCAGGAAACTCTTCTCGCCATGGAGGTGGCCTTGCGTCAGAAGATTGGAGAAGCCCCGGAG
GGATCTGAAGAAAAGAGTCATCTTCAGGAGCTCCTCTCTCTTCTTTCTGGGCAAAAGACTCCCGAGGCTCCCCCCACGGCCTCAAAAGTCCCCACCCCCT
CGTTTGCCTCGATCCTCGAGGAGATGGGCGTGCCGATGATCCGCTCCTCCCGGCGATTGGATTTCGGGGCCATGGAAAGGGCCATGAAAGACCGGATGCT
CGAAGAGACTGCCCGAACCCTCGAGTCTCGCCTCAACGAGGAGATCACACGCCACCCGGCCCCCTTCCTCTGTCCGGCCTGCGGGCGCCCCCTCCAGAGC
AAGGGCATGAAGTCCAAGACCTTTATGACGTCGTTCGGAGAGGTCACGCTCCGACGGCGTTACGGGTTTTGTCGCTCCTGCCGGAAGGGGTGCTTCCCCG
ACGATGCCCGCCTGGGACTCGACGCCACAGGATTCTCTCCCGAGGTTCAGTATCTGGCCGGCCTCTTTGGAGCCGAGACGGACTTTCTGGAAGCGAGCAC
CCTGCTGTTTTGCGCCGCCCGGATCCGGCTTCCGGAAAAGCAGGTCGAGCGGCTCGCCAAGTCCCTCGGGGAGCTGATCGACCAAGACGAACGGGAGCAT
GTCGACCTCGAGCCTCACCGCCTTCCCCAAGGTCCCCTTTATATCGGCATGGATGGGACCGGGGTCCCGATGCAGTCGCGCGAGACAGCCGGGAGAAAAG
GCAAACAGAAAGACGGCTCGTCCAAGACGCGCGAGGCCAAGATGATCGACATCTGGGAGGCCAATACGCAAAACGAGCGGGGAATCCCGATCCGGGATCC
CGGATCGGTCTCCTACTCGGCGGCCATCGAAAGCGCCTCCTGCCCGGACGTCGGTCGGGAGCTCTCGGACTTTGCCAGGCGGGTCGAACGCGAGGCCACA
CGACGAGGGGCCGCACAAGCCCGGCAGATTGTCGTCATCGGCGATGGAGCGGCCTGGATCTGGAAAACCGCCGAATACCTCTTTCCCGGAGCTCTCTGCA
TTGTGGACCGCTTCCACGCCAAGCAGCACCTCTCCGAACTCTCGCATGCCCTTTTCGGCGACTCTCCCAAGGCCGAAGAATGGAGACATTGTCGTTACGA
GGAGCTCGATGAAGGTCGGATGGACGATCTGCTCAAGGAGATCGGAATCTATGCCTCACGCTTCCCGGAAGCCGAGCAATGTCGGACTTATTTTCAGAAC
AACCGGGAGCGAATGCGCTACCCGGAGTTCCGGGCCCGGGGGCTCTGTACCTCAAGTGGCGTCGTCGAGGCGGGCTGCAAGTCGATCGTCGGGAGCCGCC
TCAAAAAGTCGGGCATGCATTGGAGCGTCACCGGAGCGAATGCCATCCTGGCCCTCCGGTGCACGATCAAGAGCGGACGCTACGAGTCGTTCTGGGAACG
TAAAGCCAGACAATGGGCAGCCTGAATGGAAACATGCAACATAATGAAACAAAAACAATCGCTTAAGACGACAAGTCAAAGTCCTAAAATTTGTCGCTCA
CCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1542 bp | 513 aa | 184 | 1725 | + | No |
Chemistry : DDE
ORF sequence :
MSPRKRPPTDPTSSPADQAQETLLAMEVALRQKIGEAPEGSEEKSHLQELLSLLSGQKTPEAPPTASKVPTPSFASILEEMGVPMIRSSRRLDFGAMERA
MKDRMLEETARTLESRLNEEITRHPAPFLCPACGRPLQSKGMKSKTFMTSFGEVTLRRRYGFCRSCRKGCFPDDARLGLDATGFSPEVQYLAGLFGAETD
FLEASTLLFCAARIRLPEKQVERLAKSLGELIDQDEREHVDLEPHRLPQGPLYIGMDGTGVPMQSRETAGRKGKQKDGSSKTREAKMIDIWEANTQNERG
IPIRDPGSVSYSAAIESASCPDVGRELSDFARRVEREATRRGAAQARQIVVIGDGAAWIWKTAEYLFPGALCIVDRFHAKQHLSELSHALFGDSPKAEEW
RHCRYEELDEGRMDDLLKEIGIYASRFPEAEQCRTYFQNNRERMRYPEFRARGLCTSSGVVEAGCKSIVGSRLKKSGMHWSVTGANAILALRCTIKSGRY
ESFWERKARQWAA
MKDRMLEETARTLESRLNEEITRHPAPFLCPACGRPLQSKGMKSKTFMTSFGEVTLRRRYGFCRSCRKGCFPDDARLGLDATGFSPEVQYLAGLFGAETD
FLEASTLLFCAARIRLPEKQVERLAKSLGELIDQDEREHVDLEPHRLPQGPLYIGMDGTGVPMQSRETAGRKGKQKDGSSKTREAKMIDIWEANTQNERG
IPIRDPGSVSYSAAIESASCPDVGRELSDFARRVEREATRRGAAQARQIVVIGDGAAWIWKTAEYLFPGALCIVDRFHAKQHLSELSHALFGDSPKAEEW
RHCRYEELDEGRMDDLLKEIGIYASRFPEAEQCRTYFQNNRERMRYPEFRARGLCTSSGVVEAGCKSIVGSRLKKSGMHWSVTGANAILALRCTIKSGRY
ESFWERKARQWAA
Blast result :
Comments
ISLfe2 is 94% aa similar to ISLfe1.
References
1] ISfinder annotation (2013)
2] Goltsman,D.S., Denef,V.J., Singer,S.W., VerBerkmoes,N.C., Lefsrud,M., Mueller,R.S., Dick,G.J., Sun,C.L., Wheeler,K.E., Zemla,A., Baker,B.J., Hauser,L., Land,M., Shah,M.B., Thelen,M.P., Hettich,R.L. and Banfield,J.F. (2009) Appl. Environ. Microbiol. 75 (13), 4599-4615.
2] Goltsman,D.S., Denef,V.J., Singer,S.W., VerBerkmoes,N.C., Lefsrud,M., Mueller,R.S., Dick,G.J., Sun,C.L., Wheeler,K.E., Zemla,A., Baker,B.J., Hauser,L., Land,M., Shah,M.B., Thelen,M.P., Hettich,R.L. and Banfield,J.F. (2009) Appl. Environ. Microbiol. 75 (13), 4599-4615.