ISBugl3

  • Family ISKra4
  • Group ISAzba1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_012718 ND Burkholderia glumae
Burkholderia glumae BGR1 plasmid bglu_2p
DNA section
IS Length : 1576 bp

Ends


IR Length : 39/40

IRL : GAGGTCCGCTAATTCTGGGAGTGGAACAAAGCTGGGGGAGTGCTCTGCAG
IRR : GAGGTCCGCTAATTCTGGGAGTGGAACAAAGTTGGGGGAGGCATGCGTCG

Insertion site


Left flankDirect repeatRight flankDR Length
ACCTCGTGTTAACAAATCCG0

DNA sequence

GAGGTCCGCTAATTCTGGGAGTGGAACAAAGCTGGGGGAGTGCTCTGCAGTCTGATACGCTGGCCTCGTCGAAGCAACAAATTGGGGGCAAGAATGTCGC
CTATTCAATGGGAGGTTGAGCTACGCAGAGTTGATGGCGGCGGCGAATGCCAGGTCGTTGGCCTCGGCAAGTTGAGGCGGCCTGACGCGTCCCGCGCGAC
AGTCTCCGACTTTGGTATCTCGCTTGCAGAGGCCCGCGCATTGCTCGGCGTGCTGCAGCAGGCGGTGACTCAACAGCAGGTTCTCGCGTATGACGCAGCC
AAACGCAGGTGTCCTCACTGCGGACGTTTTCGCCGAATCAAGGACTGGCGTTCCCGCGTGTTTGTTACAGCATTGGGCGTGGTCCACATACGAGTTCCGC
GCGTAGTCGCTTGCATGTGCTTGCCAGAACCTCTGGACGAAAACGGCGATATCGCACCATTCCGCGAGTCGGTCTGCCCGATCGCAAAATTTTTGCCGGC
GCGCATTACGCCTGAGGTCTCGTACCTGTGCGCGCGTGATGGCGCCCAGATGCCCTATCGTTCAGCTGCAAAGCACATTGGCGAGTTGTGTGGCATACCC
AAGCTGTCGCACATGTGCGTTCGGCGGCAGACGATTGGTGTGGGTCAGGATATCGAAGACCGGGAGGTCGAAGCAGGGTGGCTTGCGGCCACCCATACCT
CTCGCAGCGCCGACCGACTGGGGTTGGCGATAGACAGTACGGTCGTAACAGGCAATGCGTTGGAGGAAACCACCAAGATCGAAGTCGTTGCCGGGCGCAT
CATTCGAGACGGACACTGCGGTCGACGCTTCGCCTGCGTCACGTTACGCCGTAGCCTCACGTCCATGCTTGTCGCCGCAGCGCTGAAGAACAGCGGTTGG
CATGCCGGAACCGAAGTGGATGTCGTGAACGACGGCGCACAGGGCATGCGCTCCCTGGTCACCGATGTGGTACCGCACGTTGCAACACCAATGCTCGACT
GGTTTCACTTGGCCATGAAGCTGCATGCGGTAAAGACGTCGCTGTTCGCGAGCACGTTCGAGCCCGCACCCGCTATCCTACAAAGATGCCGAAGACTCTG
GGCGAAGATTCGTGACGCGCTGTGGCGCGGGCGAGCGGCGCTCGGTATCGAACTCACGCGTACGCTCGAGGCTTCGCTCGCGGAGGCCGCACCGTTGATG
AAGCCGTTCTATGCGAGCACCACCATGACTGCGGTAGGGGCGACCCTGCGGCTACGTGCGTTTCTCGAGAACAATGCGCCGATCCTGGTTGACTACGCGA
AAGCGAGGCAGCAGGGGCGTCGCATCTCGACCGCGCCGGCGGAATCTGTCATGAATCACGTCGTCAACCGGCGCATGTCGAAACGCCAGCAGATGCGGTG
GTCAGTCAAGGGCGCGCATCTCTTGCTGCAGACCCGCGTCAGCTTGCTCGACGGCTGCTTGCTGGGGCACTTCAAGCTGCATTTCCCGCACTTTCGCTCC
CCGGAGTTCTCGACCGGCGCGTGACACGACGCATGCCTCCCCCAACTTTGTTCCACTCCCAGAATTAGCGGACCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1431 bp476 aa941524+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSPIQWEVELRRVDGGGECQVVGLGKLRRPDASRATVSDFGISLAEARALLGVLQQAVTQQQVLAYDAAKRRCPHCGRFRRIKDWRSRVFVTALGVVHIR
VPRVVACMCLPEPLDENGDIAPFRESVCPIAKFLPARITPEVSYLCARDGAQMPYRSAAKHIGELCGIPKLSHMCVRRQTIGVGQDIEDREVEAGWLAAT
HTSRSADRLGLAIDSTVVTGNALEETTKIEVVAGRIIRDGHCGRRFACVTLRRSLTSMLVAAALKNSGWHAGTEVDVVNDGAQGMRSLVTDVVPHVATPM
LDWFHLAMKLHAVKTSLFASTFEPAPAILQRCRRLWAKIRDALWRGRAALGIELTRTLEASLAEAAPLMKPFYASTTMTAVGATLRLRAFLENNAPILVD
YAKARQQGRRISTAPAESVMNHVVNRRMSKRQQMRWSVKGAHLLLQTRVSLLDGCLLGHFKLHFPHFRSPEFSTGA

 

Blast result :
Comments
ISBugl3 is 47% aa similar to ISRli1.
References
1] ISfinder annotation (2013)
2] Lim,J., Lee,T.H., Nahm,B.H., Choi,Y.D., Kim,M. and Hwang,I.(2009) J. Bacteriol. 191 (11), 3758-3759.