ISBugl3
- Family ISKra4
- Group ISAzba1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_012718 | ND | Burkholderia glumae | Burkholderia glumae BGR1 plasmid bglu_2p |
DNA section
IS Length : 1576 bp
Ends
IR Length : 39/40
IRL : GAGGTCCGCTAATTCTGGGAGTGGAACAAAGCTGGGGGAGTGCTCTGCAG
IRR : GAGGTCCGCTAATTCTGGGAGTGGAACAAAGTTGGGGGAGGCATGCGTCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACCTCGTGTT | AACAAATCCG | 0 |
DNA sequence
GAGGTCCGCTAATTCTGGGAGTGGAACAAAGCTGGGGGAGTGCTCTGCAGTCTGATACGCTGGCCTCGTCGAAGCAACAAATTGGGGGCAAGAATGTCGC
CTATTCAATGGGAGGTTGAGCTACGCAGAGTTGATGGCGGCGGCGAATGCCAGGTCGTTGGCCTCGGCAAGTTGAGGCGGCCTGACGCGTCCCGCGCGAC
AGTCTCCGACTTTGGTATCTCGCTTGCAGAGGCCCGCGCATTGCTCGGCGTGCTGCAGCAGGCGGTGACTCAACAGCAGGTTCTCGCGTATGACGCAGCC
AAACGCAGGTGTCCTCACTGCGGACGTTTTCGCCGAATCAAGGACTGGCGTTCCCGCGTGTTTGTTACAGCATTGGGCGTGGTCCACATACGAGTTCCGC
GCGTAGTCGCTTGCATGTGCTTGCCAGAACCTCTGGACGAAAACGGCGATATCGCACCATTCCGCGAGTCGGTCTGCCCGATCGCAAAATTTTTGCCGGC
GCGCATTACGCCTGAGGTCTCGTACCTGTGCGCGCGTGATGGCGCCCAGATGCCCTATCGTTCAGCTGCAAAGCACATTGGCGAGTTGTGTGGCATACCC
AAGCTGTCGCACATGTGCGTTCGGCGGCAGACGATTGGTGTGGGTCAGGATATCGAAGACCGGGAGGTCGAAGCAGGGTGGCTTGCGGCCACCCATACCT
CTCGCAGCGCCGACCGACTGGGGTTGGCGATAGACAGTACGGTCGTAACAGGCAATGCGTTGGAGGAAACCACCAAGATCGAAGTCGTTGCCGGGCGCAT
CATTCGAGACGGACACTGCGGTCGACGCTTCGCCTGCGTCACGTTACGCCGTAGCCTCACGTCCATGCTTGTCGCCGCAGCGCTGAAGAACAGCGGTTGG
CATGCCGGAACCGAAGTGGATGTCGTGAACGACGGCGCACAGGGCATGCGCTCCCTGGTCACCGATGTGGTACCGCACGTTGCAACACCAATGCTCGACT
GGTTTCACTTGGCCATGAAGCTGCATGCGGTAAAGACGTCGCTGTTCGCGAGCACGTTCGAGCCCGCACCCGCTATCCTACAAAGATGCCGAAGACTCTG
GGCGAAGATTCGTGACGCGCTGTGGCGCGGGCGAGCGGCGCTCGGTATCGAACTCACGCGTACGCTCGAGGCTTCGCTCGCGGAGGCCGCACCGTTGATG
AAGCCGTTCTATGCGAGCACCACCATGACTGCGGTAGGGGCGACCCTGCGGCTACGTGCGTTTCTCGAGAACAATGCGCCGATCCTGGTTGACTACGCGA
AAGCGAGGCAGCAGGGGCGTCGCATCTCGACCGCGCCGGCGGAATCTGTCATGAATCACGTCGTCAACCGGCGCATGTCGAAACGCCAGCAGATGCGGTG
GTCAGTCAAGGGCGCGCATCTCTTGCTGCAGACCCGCGTCAGCTTGCTCGACGGCTGCTTGCTGGGGCACTTCAAGCTGCATTTCCCGCACTTTCGCTCC
CCGGAGTTCTCGACCGGCGCGTGACACGACGCATGCCTCCCCCAACTTTGTTCCACTCCCAGAATTAGCGGACCTC
CTATTCAATGGGAGGTTGAGCTACGCAGAGTTGATGGCGGCGGCGAATGCCAGGTCGTTGGCCTCGGCAAGTTGAGGCGGCCTGACGCGTCCCGCGCGAC
AGTCTCCGACTTTGGTATCTCGCTTGCAGAGGCCCGCGCATTGCTCGGCGTGCTGCAGCAGGCGGTGACTCAACAGCAGGTTCTCGCGTATGACGCAGCC
AAACGCAGGTGTCCTCACTGCGGACGTTTTCGCCGAATCAAGGACTGGCGTTCCCGCGTGTTTGTTACAGCATTGGGCGTGGTCCACATACGAGTTCCGC
GCGTAGTCGCTTGCATGTGCTTGCCAGAACCTCTGGACGAAAACGGCGATATCGCACCATTCCGCGAGTCGGTCTGCCCGATCGCAAAATTTTTGCCGGC
GCGCATTACGCCTGAGGTCTCGTACCTGTGCGCGCGTGATGGCGCCCAGATGCCCTATCGTTCAGCTGCAAAGCACATTGGCGAGTTGTGTGGCATACCC
AAGCTGTCGCACATGTGCGTTCGGCGGCAGACGATTGGTGTGGGTCAGGATATCGAAGACCGGGAGGTCGAAGCAGGGTGGCTTGCGGCCACCCATACCT
CTCGCAGCGCCGACCGACTGGGGTTGGCGATAGACAGTACGGTCGTAACAGGCAATGCGTTGGAGGAAACCACCAAGATCGAAGTCGTTGCCGGGCGCAT
CATTCGAGACGGACACTGCGGTCGACGCTTCGCCTGCGTCACGTTACGCCGTAGCCTCACGTCCATGCTTGTCGCCGCAGCGCTGAAGAACAGCGGTTGG
CATGCCGGAACCGAAGTGGATGTCGTGAACGACGGCGCACAGGGCATGCGCTCCCTGGTCACCGATGTGGTACCGCACGTTGCAACACCAATGCTCGACT
GGTTTCACTTGGCCATGAAGCTGCATGCGGTAAAGACGTCGCTGTTCGCGAGCACGTTCGAGCCCGCACCCGCTATCCTACAAAGATGCCGAAGACTCTG
GGCGAAGATTCGTGACGCGCTGTGGCGCGGGCGAGCGGCGCTCGGTATCGAACTCACGCGTACGCTCGAGGCTTCGCTCGCGGAGGCCGCACCGTTGATG
AAGCCGTTCTATGCGAGCACCACCATGACTGCGGTAGGGGCGACCCTGCGGCTACGTGCGTTTCTCGAGAACAATGCGCCGATCCTGGTTGACTACGCGA
AAGCGAGGCAGCAGGGGCGTCGCATCTCGACCGCGCCGGCGGAATCTGTCATGAATCACGTCGTCAACCGGCGCATGTCGAAACGCCAGCAGATGCGGTG
GTCAGTCAAGGGCGCGCATCTCTTGCTGCAGACCCGCGTCAGCTTGCTCGACGGCTGCTTGCTGGGGCACTTCAAGCTGCATTTCCCGCACTTTCGCTCC
CCGGAGTTCTCGACCGGCGCGTGACACGACGCATGCCTCCCCCAACTTTGTTCCACTCCCAGAATTAGCGGACCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1431 bp | 476 aa | 94 | 1524 | + | No |
Chemistry : DDE
ORF sequence :
MSPIQWEVELRRVDGGGECQVVGLGKLRRPDASRATVSDFGISLAEARALLGVLQQAVTQQQVLAYDAAKRRCPHCGRFRRIKDWRSRVFVTALGVVHIR
VPRVVACMCLPEPLDENGDIAPFRESVCPIAKFLPARITPEVSYLCARDGAQMPYRSAAKHIGELCGIPKLSHMCVRRQTIGVGQDIEDREVEAGWLAAT
HTSRSADRLGLAIDSTVVTGNALEETTKIEVVAGRIIRDGHCGRRFACVTLRRSLTSMLVAAALKNSGWHAGTEVDVVNDGAQGMRSLVTDVVPHVATPM
LDWFHLAMKLHAVKTSLFASTFEPAPAILQRCRRLWAKIRDALWRGRAALGIELTRTLEASLAEAAPLMKPFYASTTMTAVGATLRLRAFLENNAPILVD
YAKARQQGRRISTAPAESVMNHVVNRRMSKRQQMRWSVKGAHLLLQTRVSLLDGCLLGHFKLHFPHFRSPEFSTGA
VPRVVACMCLPEPLDENGDIAPFRESVCPIAKFLPARITPEVSYLCARDGAQMPYRSAAKHIGELCGIPKLSHMCVRRQTIGVGQDIEDREVEAGWLAAT
HTSRSADRLGLAIDSTVVTGNALEETTKIEVVAGRIIRDGHCGRRFACVTLRRSLTSMLVAAALKNSGWHAGTEVDVVNDGAQGMRSLVTDVVPHVATPM
LDWFHLAMKLHAVKTSLFASTFEPAPAILQRCRRLWAKIRDALWRGRAALGIELTRTLEASLAEAAPLMKPFYASTTMTAVGATLRLRAFLENNAPILVD
YAKARQQGRRISTAPAESVMNHVVNRRMSKRQQMRWSVKGAHLLLQTRVSLLDGCLLGHFKLHFPHFRSPEFSTGA
Blast result :
Comments
ISBugl3 is 47% aa similar to ISRli1.
References
1] ISfinder annotation (2013)
2] Lim,J., Lee,T.H., Nahm,B.H., Choi,Y.D., Kim,M. and Hwang,I.(2009) J. Bacteriol. 191 (11), 3758-3759.
2] Lim,J., Lee,T.H., Nahm,B.H., Choi,Y.D., Kim,M. and Hwang,I.(2009) J. Bacteriol. 191 (11), 3758-3759.