IS5Sa2
- Family IS5
- Group IS1031
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AB001339 | ND | Synechocystis sp. | Synechocystis sp. PCC6803 |
DNA section
IS Length : 908 bp
Ends
IR Length : 16/17
IRL : GAGCTCATTTATAAAGTCTTGTAATGGATAGCAAGTAGGAGAAGAAAAAA
IRR : GAGCCCATTTATAAAGTGGTAGAAGTAGCAGAAAGACGACGCAACATAAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACTCTCAACC | ATA | GCAGCCCGCA | 3 |
DNA sequence
GAGCTCATTTATAAAGTCTTGTAATGGATAGCAAGTAGGAGAAGAAAAAAAGGAAAACTAAGAGTAAGAGCAGAAGGAGACAAAGAGCATGAAAAGTCTG
ACAGCCTATGAAACAGACCTGAGCGATGCAGAATGGGCAATACTTGAACCAATGATTCCTCCCGCAAAGCCCGGAGGACACCCACGAACCACAGATATGC
GAGCGGTTTGTAATGGTATTTACTACCAACTAAAAACGGGTTGTCAATGGGCAATGTTACCCCATGACTTTCCTCCTAGTAGCACGGTCTATAGCTATTA
CCGTAAATGGCAACGTCATGGCGTGTGGGAAAGGCTCAATCTAAGGCTGTTGGAGCAATGCCGCCTCCAGAGTGGCAAGAGCCTTGAGCCCAGCGTGATA
GCGGCAGATAGTCAATCGGTAAAAACCACCGAAAAAAGGGGGAAGTCTACGGTTTTGACGGAGGTAAGAAGGTGAAAGGACGAAAGCGTCATCTAATCGT
CGATAGTCTGGGCTTAGTCTTAAAAGTGATAGTGACCGAAGCAAATGCAAGTGAACGCATCGTCACAGCTTATGCTCTGATGAGTTTGCTTGAAGAAGGA
ACTCAACTCCTCGAGTCTGTCAAGAGCATGTTAGTAGACCAGGGTTATCGAGGTGATACCTTTGGGTTAGCCATCTGGCTCTTAATTCAAGCCAAAGTCC
AGGTGATTAGTCGTTCAGGGAAGTCTTTTGAGGTCTTACCAAAAAGATGGATTGTCGAGAGGACGTTCGGTTGGTTGAACTGGTATCGTCGTTTGAGTAA
GGATTATGAGCATCTACCAGAAATGAGCGAAGCGGCTATTTATGCCGTGATGACTCGCATTATGTTGCGTCGTCTTTCTGCTACTTCTACCACTTTATAA
ATGGGCTC
ACAGCCTATGAAACAGACCTGAGCGATGCAGAATGGGCAATACTTGAACCAATGATTCCTCCCGCAAAGCCCGGAGGACACCCACGAACCACAGATATGC
GAGCGGTTTGTAATGGTATTTACTACCAACTAAAAACGGGTTGTCAATGGGCAATGTTACCCCATGACTTTCCTCCTAGTAGCACGGTCTATAGCTATTA
CCGTAAATGGCAACGTCATGGCGTGTGGGAAAGGCTCAATCTAAGGCTGTTGGAGCAATGCCGCCTCCAGAGTGGCAAGAGCCTTGAGCCCAGCGTGATA
GCGGCAGATAGTCAATCGGTAAAAACCACCGAAAAAAGGGGGAAGTCTACGGTTTTGACGGAGGTAAGAAGGTGAAAGGACGAAAGCGTCATCTAATCGT
CGATAGTCTGGGCTTAGTCTTAAAAGTGATAGTGACCGAAGCAAATGCAAGTGAACGCATCGTCACAGCTTATGCTCTGATGAGTTTGCTTGAAGAAGGA
ACTCAACTCCTCGAGTCTGTCAAGAGCATGTTAGTAGACCAGGGTTATCGAGGTGATACCTTTGGGTTAGCCATCTGGCTCTTAATTCAAGCCAAAGTCC
AGGTGATTAGTCGTTCAGGGAAGTCTTTTGAGGTCTTACCAAAAAGATGGATTGTCGAGAGGACGTTCGGTTGGTTGAACTGGTATCGTCGTTTGAGTAA
GGATTATGAGCATCTACCAGAAATGAGCGAAGCGGCTATTTATGCCGTGATGACTCGCATTATGTTGCGTCGTCTTTCTGCTACTTCTACCACTTTATAA
ATGGGCTC
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
387 bp | 128 aa | 89 | 475 | + | No |
Description : First part of the transposase
ORF sequence :
MKSLTAYETDLSDAEWAILEPMIPPAKPGGHPRTTDMRAVCNGIYYQLKTGCQWAMLPHDFPPSSTVYSYYRKWQRHGVWERLNLRLLEQCRLQSGKSLE
PSVIAADSQSVKTTEKRGKSTVLTEVRR
PSVIAADSQSVKTTEKRGKSTVLTEVRR
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
489 bp | 162 aa | 412 | 900 | + | No |
Description : Second part of the transposase
ORF sequence :
SIGKNHRKKGEVYGFDGGKKVKGRKRHLIVDSLGLVLKVIVTEANASERIVTAYALMSLLEEGTQLLESVKSMLVDQGYRGDTFGLAIWLLIQAKVQVIS
RSGKSFEVLPKRWIVERTFGWLNWYRRLSKDYEHLPEMSEAAIYAVMTRIMLRRLSATSTTL
RSGKSFEVLPKRWIVERTFGWLNWYRRLSKDYEHLPEMSEAAIYAVMTRIMLRRLSATSTTL
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
812 bp | 270 aa | 89 | 900 | + | Yes |
Chemistry : DDE
ORF sequence :
MKSLTAYETDLSDAEWAILEPMIPPAKPGGHPRTTDMRAVCNGIYYQLKTGCQWAMLPHDFPPSSTVYSYYRKWQRHGVWERLNLRLLEQCRLQSGKSLE
PSVIAADSQSVKTTEKKGEVYGFDGGKKVKGRKRHLIVDSLGLVLKVIVTEANASERIVTAYALMSLLEEGTQLLESVKSMLVDQGYRGDTFGLAIWLLI
QAKVQVISRSGKSFEVLPKRWIVERTFGWLNWYRRLSKDYEHLPEMSEAAIYAVMTRIMLRRLSATSTTL
PSVIAADSQSVKTTEKKGEVYGFDGGKKVKGRKRHLIVDSLGLVLKVIVTEANASERIVTAYALMSLLEEGTQLLESVKSMLVDQGYRGDTFGLAIWLLI
QAKVQVISRSGKSFEVLPKRWIVERTFGWLNWYRRLSKDYEHLPEMSEAAIYAVMTRIMLRRLSATSTTL
Blast result :
Comments
See Synechocystis sp. Genome (cf. genome section in ISDatabase).
IS5Sa2 is 83% aa similar to ISAva7. The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
IS5Sa2 is 83% aa similar to ISAva7. The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1]Kaneko,T., Sato,S., Kotani,H., Tanaka,A., Asamizu,E., Nakamura,Y., Miyajima,N., Hirosawa,M., Sugiura,M., Sasamoto,S., Kimura,T., Hosouchi,T., Matsuno,A., Muraki,A., Nakazaki,N., Naruo,K., Okumura,S., Shimpo,S., Takeuchi,C., Wada,T., Watanabe,A., Yamada,M., Yasuda,M. and Tabata,S.(1996) DNA Res. 3 (3), 109-136