ISUnCu18

  • Family ISKra4
  • Group ISAzba1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AB266131 ND uncultured bacterium
uncultured bacterium
DNA section
IS Length : 1434 bp

Ends


IR Length : 22/23

IRL : GGGAGTGGGCAAAACCTGGTGGTCGACGTGGTAGGGTAAGGTTTCGGAAC
IRR : GGGAGTGGGCAAAACTTGGTGGTTAAGCGGCCCGCTTTGAGACGCCTAGC

Insertion site


Left flankDirect repeatRight flankDR Length
GTTTTCATAGAGTCTTGGCT0

DNA sequence

GGGAGTGGGCAAAACCTGGTGGTCGACGTGGTAGGGTAAGGTTTCGGAACAAGGCGGGACCCACCATGGATGTAAGCATTTTTATCGAGACGACGTTTGA
CGATGGAGAAACCAAGAGGCGCAATATCGGTCGACTTCGCCGTGCGCCGGATGAGTTTGGTTCCGAGAATGTGGGCCTTCTCCTCGACGACGCAAAGACC
TTGTTGAGGCGCTTGCAGGAAGCGATTTTGCAAGATCAGGTCGGTGAAGCAATAGAGGCTCGCCGGAAATGCGATGGCTGTGGCAAACACCGCGCGATCC
ATGATGATCGAGGCCGTATTCTCGATACTCTTTTCGGGCGAATTCGGGTGAAGTGGCCAAGGCTTCGACGCTGCTTATGCCAACCCACTCGGATCGCGAA
ATCTGGACCGCAATCACCACTCGCCGGGCTGTTCTCTGACCGTGCGACTCCCGAACTTCGGCGCCTGCAGGCTGAATTGGGGGCCAGGCACTCGTTTCGG
GAAGCCGCTCGATTGATCGAAATGTTCCTGCCCTGTTCGGCTCAGTCGAACACGACCGTTCGAAATCGCTTGGGTCGCACTGCCGACGAGTTGGGCCACG
ACGACGCAAGCCAAGGAGACGCGGATACAATCGCACCGCCCGCCCCACTGACCGTTTTCCTGGATGGTGCGCATATACGATGTCGGCCGGAGTACCAGAA
ACGCCACCTGGATGTCGTGGTCGGCAAGGTTGAAAGCCTCTATATGAGCCGGCGGTTTGGCCTCGTGCAACAAGCCGCCAGTTCTCCTGCAAAGCAGCTC
CGAAATGACTTGATTGCGCAGGGCTGGGACGGTCAGAGCAAAGTGACCGTGATTTCAGACGGCGAACCTGCACTGCCGAATTTGGTGAGGCGTGCCGTTC
GAGGTCCCGTCACCCACATACTGGACTGGTGGCATATATCGATGCGGGTCAAGCACATTGAAAATGCGGTGCGGGGGCTTCTGCAATCGAAGGGCTTTTC
AGGGTTGCCGCTCCTCTTCGAGCGACCTTCCGATACACTGCGTTGGCACCTCTGGCACGGCAAAGTGATGACCGCCGCGACAATCCTCAAGGTTCTTCAG
ATCGATTGCGATCGTCTGCACGCCGAAACCCGAGAATTACGAGACGCGGCCAAGCGGGTCAAAGCCCGGTGCCAGGACCTCTATTCCTACCTTGCGAACA
ACTTCGACGCGCTCGTAGACTACGGCCATCGACACCGGAATGGCCTCGCAGTTTCGTCGTCCCGGGCAGAAGGCTGTGTTGATGACATCGGCAACACCCG
CATGGGCAAGCGGCGGCGCATGAGATGGTCACCGCGGGGCGCGCATCGGGTTGCCGTCACTCGGGCCGCTGTCCTTGACGGAAGGCTAGGCGTCTCAAAG
CGGGCCGCTTAACCACCAAGTTTTGCCCACTCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1347 bp448 aa661412+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDVSIFIETTFDDGETKRRNIGRLRRAPDEFGSENVGLLLDDAKTLLRRLQEAILQDQVGEAIEARRKCDGCGKHRAIHDDRGRILDTLFGRIRVKWPRL
RRCLCQPTRIAKSGPQSPLAGLFSDRATPELRRLQAELGARHSFREAARLIEMFLPCSAQSNTTVRNRLGRTADELGHDDASQGDADTIAPPAPLTVFLD
GAHIRCRPEYQKRHLDVVVGKVESLYMSRRFGLVQQAASSPAKQLRNDLIAQGWDGQSKVTVISDGEPALPNLVRRAVRGPVTHILDWWHISMRVKHIEN
AVRGLLQSKGFSGLPLLFERPSDTLRWHLWHGKVMTAATILKVLQIDCDRLHAETRELRDAAKRVKARCQDLYSYLANNFDALVDYGHRHRNGLAVSSSR
AEGCVDDIGNTRMGKRRRMRWSPRGAHRVAVTRAAVLDGRLGVSKRAA

 

Blast result :
Comments
ISUnCu18 is 96% aa similar to ISSusp3.
References
1] ISfinder annotation (2013)
2] Suenaga,H., Ohnuki,T. and Miyazaki,K. (2007) Environ. Microbiol. 9 (9), 2289-2297.
3] Suenaga,H., Koyama,Y., Miyakoshi,M., Miyazaki,R., Yano,H., Sota,M., Ohtsubo,Y., Tsuda,M. and Miyazaki,K. (2009) ISME J 3 (12), 1335-1348.