ISUnCu18
- Family ISKra4
- Group ISAzba1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AB266131 | ND | uncultured bacterium | uncultured bacterium |
DNA section
IS Length : 1434 bp
Ends
IR Length : 22/23
IRL : GGGAGTGGGCAAAACCTGGTGGTCGACGTGGTAGGGTAAGGTTTCGGAAC
IRR : GGGAGTGGGCAAAACTTGGTGGTTAAGCGGCCCGCTTTGAGACGCCTAGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTTTTCATAG | AGTCTTGGCT | 0 |
DNA sequence
GGGAGTGGGCAAAACCTGGTGGTCGACGTGGTAGGGTAAGGTTTCGGAACAAGGCGGGACCCACCATGGATGTAAGCATTTTTATCGAGACGACGTTTGA
CGATGGAGAAACCAAGAGGCGCAATATCGGTCGACTTCGCCGTGCGCCGGATGAGTTTGGTTCCGAGAATGTGGGCCTTCTCCTCGACGACGCAAAGACC
TTGTTGAGGCGCTTGCAGGAAGCGATTTTGCAAGATCAGGTCGGTGAAGCAATAGAGGCTCGCCGGAAATGCGATGGCTGTGGCAAACACCGCGCGATCC
ATGATGATCGAGGCCGTATTCTCGATACTCTTTTCGGGCGAATTCGGGTGAAGTGGCCAAGGCTTCGACGCTGCTTATGCCAACCCACTCGGATCGCGAA
ATCTGGACCGCAATCACCACTCGCCGGGCTGTTCTCTGACCGTGCGACTCCCGAACTTCGGCGCCTGCAGGCTGAATTGGGGGCCAGGCACTCGTTTCGG
GAAGCCGCTCGATTGATCGAAATGTTCCTGCCCTGTTCGGCTCAGTCGAACACGACCGTTCGAAATCGCTTGGGTCGCACTGCCGACGAGTTGGGCCACG
ACGACGCAAGCCAAGGAGACGCGGATACAATCGCACCGCCCGCCCCACTGACCGTTTTCCTGGATGGTGCGCATATACGATGTCGGCCGGAGTACCAGAA
ACGCCACCTGGATGTCGTGGTCGGCAAGGTTGAAAGCCTCTATATGAGCCGGCGGTTTGGCCTCGTGCAACAAGCCGCCAGTTCTCCTGCAAAGCAGCTC
CGAAATGACTTGATTGCGCAGGGCTGGGACGGTCAGAGCAAAGTGACCGTGATTTCAGACGGCGAACCTGCACTGCCGAATTTGGTGAGGCGTGCCGTTC
GAGGTCCCGTCACCCACATACTGGACTGGTGGCATATATCGATGCGGGTCAAGCACATTGAAAATGCGGTGCGGGGGCTTCTGCAATCGAAGGGCTTTTC
AGGGTTGCCGCTCCTCTTCGAGCGACCTTCCGATACACTGCGTTGGCACCTCTGGCACGGCAAAGTGATGACCGCCGCGACAATCCTCAAGGTTCTTCAG
ATCGATTGCGATCGTCTGCACGCCGAAACCCGAGAATTACGAGACGCGGCCAAGCGGGTCAAAGCCCGGTGCCAGGACCTCTATTCCTACCTTGCGAACA
ACTTCGACGCGCTCGTAGACTACGGCCATCGACACCGGAATGGCCTCGCAGTTTCGTCGTCCCGGGCAGAAGGCTGTGTTGATGACATCGGCAACACCCG
CATGGGCAAGCGGCGGCGCATGAGATGGTCACCGCGGGGCGCGCATCGGGTTGCCGTCACTCGGGCCGCTGTCCTTGACGGAAGGCTAGGCGTCTCAAAG
CGGGCCGCTTAACCACCAAGTTTTGCCCACTCCC
CGATGGAGAAACCAAGAGGCGCAATATCGGTCGACTTCGCCGTGCGCCGGATGAGTTTGGTTCCGAGAATGTGGGCCTTCTCCTCGACGACGCAAAGACC
TTGTTGAGGCGCTTGCAGGAAGCGATTTTGCAAGATCAGGTCGGTGAAGCAATAGAGGCTCGCCGGAAATGCGATGGCTGTGGCAAACACCGCGCGATCC
ATGATGATCGAGGCCGTATTCTCGATACTCTTTTCGGGCGAATTCGGGTGAAGTGGCCAAGGCTTCGACGCTGCTTATGCCAACCCACTCGGATCGCGAA
ATCTGGACCGCAATCACCACTCGCCGGGCTGTTCTCTGACCGTGCGACTCCCGAACTTCGGCGCCTGCAGGCTGAATTGGGGGCCAGGCACTCGTTTCGG
GAAGCCGCTCGATTGATCGAAATGTTCCTGCCCTGTTCGGCTCAGTCGAACACGACCGTTCGAAATCGCTTGGGTCGCACTGCCGACGAGTTGGGCCACG
ACGACGCAAGCCAAGGAGACGCGGATACAATCGCACCGCCCGCCCCACTGACCGTTTTCCTGGATGGTGCGCATATACGATGTCGGCCGGAGTACCAGAA
ACGCCACCTGGATGTCGTGGTCGGCAAGGTTGAAAGCCTCTATATGAGCCGGCGGTTTGGCCTCGTGCAACAAGCCGCCAGTTCTCCTGCAAAGCAGCTC
CGAAATGACTTGATTGCGCAGGGCTGGGACGGTCAGAGCAAAGTGACCGTGATTTCAGACGGCGAACCTGCACTGCCGAATTTGGTGAGGCGTGCCGTTC
GAGGTCCCGTCACCCACATACTGGACTGGTGGCATATATCGATGCGGGTCAAGCACATTGAAAATGCGGTGCGGGGGCTTCTGCAATCGAAGGGCTTTTC
AGGGTTGCCGCTCCTCTTCGAGCGACCTTCCGATACACTGCGTTGGCACCTCTGGCACGGCAAAGTGATGACCGCCGCGACAATCCTCAAGGTTCTTCAG
ATCGATTGCGATCGTCTGCACGCCGAAACCCGAGAATTACGAGACGCGGCCAAGCGGGTCAAAGCCCGGTGCCAGGACCTCTATTCCTACCTTGCGAACA
ACTTCGACGCGCTCGTAGACTACGGCCATCGACACCGGAATGGCCTCGCAGTTTCGTCGTCCCGGGCAGAAGGCTGTGTTGATGACATCGGCAACACCCG
CATGGGCAAGCGGCGGCGCATGAGATGGTCACCGCGGGGCGCGCATCGGGTTGCCGTCACTCGGGCCGCTGTCCTTGACGGAAGGCTAGGCGTCTCAAAG
CGGGCCGCTTAACCACCAAGTTTTGCCCACTCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1347 bp | 448 aa | 66 | 1412 | + | No |
Chemistry : DDE
ORF sequence :
MDVSIFIETTFDDGETKRRNIGRLRRAPDEFGSENVGLLLDDAKTLLRRLQEAILQDQVGEAIEARRKCDGCGKHRAIHDDRGRILDTLFGRIRVKWPRL
RRCLCQPTRIAKSGPQSPLAGLFSDRATPELRRLQAELGARHSFREAARLIEMFLPCSAQSNTTVRNRLGRTADELGHDDASQGDADTIAPPAPLTVFLD
GAHIRCRPEYQKRHLDVVVGKVESLYMSRRFGLVQQAASSPAKQLRNDLIAQGWDGQSKVTVISDGEPALPNLVRRAVRGPVTHILDWWHISMRVKHIEN
AVRGLLQSKGFSGLPLLFERPSDTLRWHLWHGKVMTAATILKVLQIDCDRLHAETRELRDAAKRVKARCQDLYSYLANNFDALVDYGHRHRNGLAVSSSR
AEGCVDDIGNTRMGKRRRMRWSPRGAHRVAVTRAAVLDGRLGVSKRAA
RRCLCQPTRIAKSGPQSPLAGLFSDRATPELRRLQAELGARHSFREAARLIEMFLPCSAQSNTTVRNRLGRTADELGHDDASQGDADTIAPPAPLTVFLD
GAHIRCRPEYQKRHLDVVVGKVESLYMSRRFGLVQQAASSPAKQLRNDLIAQGWDGQSKVTVISDGEPALPNLVRRAVRGPVTHILDWWHISMRVKHIEN
AVRGLLQSKGFSGLPLLFERPSDTLRWHLWHGKVMTAATILKVLQIDCDRLHAETRELRDAAKRVKARCQDLYSYLANNFDALVDYGHRHRNGLAVSSSR
AEGCVDDIGNTRMGKRRRMRWSPRGAHRVAVTRAAVLDGRLGVSKRAA
Blast result :
Comments
ISUnCu18 is 96% aa similar to ISSusp3.
References
1] ISfinder annotation (2013)
2] Suenaga,H., Ohnuki,T. and Miyazaki,K. (2007) Environ. Microbiol. 9 (9), 2289-2297.
3] Suenaga,H., Koyama,Y., Miyakoshi,M., Miyazaki,R., Yano,H., Sota,M., Ohtsubo,Y., Tsuda,M. and Miyazaki,K. (2009) ISME J 3 (12), 1335-1348.
2] Suenaga,H., Ohnuki,T. and Miyazaki,K. (2007) Environ. Microbiol. 9 (9), 2289-2297.
3] Suenaga,H., Koyama,Y., Miyakoshi,M., Miyazaki,R., Yano,H., Sota,M., Ohtsubo,Y., Tsuda,M. and Miyazaki,K. (2009) ISME J 3 (12), 1335-1348.