ISSfr3
- Family ISKra4
- Group ISAzba1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_016812 | ND | Sinorhizobium fredii | Sinorhizobium fredii HH103 |
DNA section
IS Length : 1448 bp
Ends
IR Length : 23/26
IRL : GGGAGTGGGAAAAAGGTGGGGGTAAGAAATTTCGGCTAAGCAGGCGCCTT
IRR : GGGAGCGGGAAAAAGCTGGGGGTTAGGCTGCGAGGTCGAGCTTTGCTTGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAAGCAATGT | AGTTTTGGTG | 0 |
DNA sequence
GGGAGTGGGAAAAAGGTGGGGGTAAGAAATTTCGGCTAAGCAGGCGCCTTTTCTGAAGGGGCATTCGTTGGCGTCGCACTTAAAGATGATCATCTCGGTC
GAGCTTGTTGGCATTGACGGCGTGTCGCAGCGTTGCGAAATTGCCAAGGTCGACCGGTCTCTCGATGGGGCCCGTCTCAACAATTTTGGCCTCTCCCTCG
AAGAGGCCAAGGACATACAGCGGCGCTTACAACAGGAACTGACCCAGTTTCAGACGGATCAAGCCGCCCAGCGAGATCGGAAGTGCCAAGACTGTAACCG
CCGTCGCTCGGTGCATGATAGTAGGTACCGCACGATCCATTCGCTCTTTGGATCTTGCCACGTGCGTGTGCCGCGGTGGTGCCGCTGTGCATGCGGATCG
ACCGCGAGGTTGGGCACGGGATGCGTCGAAACCCTGTTGAATGGCCGAGCTACCCCGGAGTTGGAGCGCATCCAAGCCGAACTGGGCTCCCGGTTGTCAT
TTCGAGAAGCAGCCCGTGTACTTGACATCTTTGTGCCGGCCACGCGGCCTCATAATCATCGAACCGTAAGCAACCGGCTGGGCAAGGTTGCCGATCAGAT
CGAAAAGTGGGACGTCGCGGGCCCCTATCGTATCAGTCGCGCCGGCAAGTCTCCAGTTTCCGTTTTCATTGATGGCGCCTATATTCGCGCGGTTCCCGGC
TATCAAAGCCGGCATTTCGAGATCGCGATGGGACGCGTGGTTGCGCAAGGCCGAGCACCGCGTCAGTTTGCCGGTGCGCCGAATATTGCTACCGGCAAAC
ACGATATCGTTCGCGCGGCGATGCGCGCGCAAGGATGGCTGCCTGGCCGAGACGTCACCGTCTTTAGTGACGGAGAGGTCGGGCTGCAGAGCATCGTGCT
CAGCGCAACACGCCAGCCCGTCACGCATATTCTCGACTGGTTTCACCTGTCGATGCGGCTGCGGCACATTGAGCAGGCCTGGGAGGGCATCAGGCATCTG
CAAAATCTGGATGTCTATCTGCAAAGCGTCGCGGTCCATGTGCCCAGGCTTCGGTATCTCCTCTGGAGCGGATATGTCCGAGAGGCAAGCGAAGCCGTAA
AGCAGATGCTCGGCCAATTGGATCAGCATCTCGGTTTTCACGACGCCCCCGGCAAACTCAGGCGCCTATACGAGCTGATCAACAATCTTGGCACCTACCT
GGGGCAGAACGCAGCTTCGATCGTCAACTACTGTCGGCGATACTGGTCCGGTCAGCCGATATCCAGTTCGCCGGCCGAAAGTGCCGCCAACAGCCTCGTC
AATGCCCGTATGAATAAGAAGCGGCAAATGCGTTGGACACCGATCGGCGCTCATCGGGTTCTTCAAGTCCGAGCCGCCGTCGCGGACGGCCGTCTCAAAC
AAGCAAAGCTCGACCTCGCAGCCTAACCCCCAGCTTTTTCCCGCTCCC
GAGCTTGTTGGCATTGACGGCGTGTCGCAGCGTTGCGAAATTGCCAAGGTCGACCGGTCTCTCGATGGGGCCCGTCTCAACAATTTTGGCCTCTCCCTCG
AAGAGGCCAAGGACATACAGCGGCGCTTACAACAGGAACTGACCCAGTTTCAGACGGATCAAGCCGCCCAGCGAGATCGGAAGTGCCAAGACTGTAACCG
CCGTCGCTCGGTGCATGATAGTAGGTACCGCACGATCCATTCGCTCTTTGGATCTTGCCACGTGCGTGTGCCGCGGTGGTGCCGCTGTGCATGCGGATCG
ACCGCGAGGTTGGGCACGGGATGCGTCGAAACCCTGTTGAATGGCCGAGCTACCCCGGAGTTGGAGCGCATCCAAGCCGAACTGGGCTCCCGGTTGTCAT
TTCGAGAAGCAGCCCGTGTACTTGACATCTTTGTGCCGGCCACGCGGCCTCATAATCATCGAACCGTAAGCAACCGGCTGGGCAAGGTTGCCGATCAGAT
CGAAAAGTGGGACGTCGCGGGCCCCTATCGTATCAGTCGCGCCGGCAAGTCTCCAGTTTCCGTTTTCATTGATGGCGCCTATATTCGCGCGGTTCCCGGC
TATCAAAGCCGGCATTTCGAGATCGCGATGGGACGCGTGGTTGCGCAAGGCCGAGCACCGCGTCAGTTTGCCGGTGCGCCGAATATTGCTACCGGCAAAC
ACGATATCGTTCGCGCGGCGATGCGCGCGCAAGGATGGCTGCCTGGCCGAGACGTCACCGTCTTTAGTGACGGAGAGGTCGGGCTGCAGAGCATCGTGCT
CAGCGCAACACGCCAGCCCGTCACGCATATTCTCGACTGGTTTCACCTGTCGATGCGGCTGCGGCACATTGAGCAGGCCTGGGAGGGCATCAGGCATCTG
CAAAATCTGGATGTCTATCTGCAAAGCGTCGCGGTCCATGTGCCCAGGCTTCGGTATCTCCTCTGGAGCGGATATGTCCGAGAGGCAAGCGAAGCCGTAA
AGCAGATGCTCGGCCAATTGGATCAGCATCTCGGTTTTCACGACGCCCCCGGCAAACTCAGGCGCCTATACGAGCTGATCAACAATCTTGGCACCTACCT
GGGGCAGAACGCAGCTTCGATCGTCAACTACTGTCGGCGATACTGGTCCGGTCAGCCGATATCCAGTTCGCCGGCCGAAAGTGCCGCCAACAGCCTCGTC
AATGCCCGTATGAATAAGAAGCGGCAAATGCGTTGGACACCGATCGGCGCTCATCGGGTTCTTCAAGTCCGAGCCGCCGTCGCGGACGGCCGTCTCAAAC
AAGCAAAGCTCGACCTCGCAGCCTAACCCCCAGCTTTTTCCCGCTCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1347 bp | 452 aa | 80 | 1426 | + | No |
Chemistry : DDE
ORF sequence :
MASHLKMIISVELVGIDGVSQRCEIAKVDRSLDGARLNNFGLSLEEAKDIQRRLQQELTQFQTDQAAQRDRKCQDCNRRRSVHDSRYRTIHSLFGSCHVR
VPRWCRCACGSTARLGTGCVETLLNGRATPELERIQAELGSRLSFREAARVLDIFVPATRPHNHRTVSNRLGKVADQIEKWDVAGPYRISRAGKSPVSVF
IDGAYIRAVPGYQSRHFEIAMGRVVAQGRAPRQFAGAPNIATGKHDIVRAAMRAQGWLPGRDVTVFSDGEVGLQSIVLSATRQPVTHILDWFHLSMRLRH
IEQAWEGIRHLQNLDVYLQSVAVHVPRLRYLLWSGYVREASEAVKQMLGQLDQHLGFHDAPGKLRRLYELINNLGTYLGQNAASIVNYCRRYWSGQPISS
SPAESAANSLVNARMNKKRQMRWTPIGAHRVLQVRAAVADGRLKQAKLDLAA
VPRWCRCACGSTARLGTGCVETLLNGRATPELERIQAELGSRLSFREAARVLDIFVPATRPHNHRTVSNRLGKVADQIEKWDVAGPYRISRAGKSPVSVF
IDGAYIRAVPGYQSRHFEIAMGRVVAQGRAPRQFAGAPNIATGKHDIVRAAMRAQGWLPGRDVTVFSDGEVGLQSIVLSATRQPVTHILDWFHLSMRLRH
IEQAWEGIRHLQNLDVYLQSVAVHVPRLRYLLWSGYVREASEAVKQMLGQLDQHLGFHDAPGKLRRLYELINNLGTYLGQNAASIVNYCRRYWSGQPISS
SPAESAANSLVNARMNKKRQMRWTPIGAHRVLQVRAAVADGRLKQAKLDLAA
Blast result :
Comments
ISSfr3 is 57% aa similar to ISSusp3.
References
1] ISfinder annotation (2013)
2] Weidner,S., Becker,A., Bonilla,I., Jaenicke,S., Lloret,J., Margaret,I., Puhler,A., Ruiz-Sainz,J.E., Schneiker-Bekel,S., Szczepanowski,R., Vinardell,J.M., Zehner,S. and Gottfert,M. (2012) J. Bacteriol. 194 (6), 1617-1618.
2] Weidner,S., Becker,A., Bonilla,I., Jaenicke,S., Lloret,J., Margaret,I., Puhler,A., Ruiz-Sainz,J.E., Schneiker-Bekel,S., Szczepanowski,R., Vinardell,J.M., Zehner,S. and Gottfert,M. (2012) J. Bacteriol. 194 (6), 1617-1618.