ISSfr3

  • Family ISKra4
  • Group ISAzba1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_016812 ND Sinorhizobium fredii
Sinorhizobium fredii HH103
DNA section
IS Length : 1448 bp

Ends


IR Length : 23/26

IRL : GGGAGTGGGAAAAAGGTGGGGGTAAGAAATTTCGGCTAAGCAGGCGCCTT
IRR : GGGAGCGGGAAAAAGCTGGGGGTTAGGCTGCGAGGTCGAGCTTTGCTTGT

Insertion site


Left flankDirect repeatRight flankDR Length
GAAGCAATGTAGTTTTGGTG0

DNA sequence

GGGAGTGGGAAAAAGGTGGGGGTAAGAAATTTCGGCTAAGCAGGCGCCTTTTCTGAAGGGGCATTCGTTGGCGTCGCACTTAAAGATGATCATCTCGGTC
GAGCTTGTTGGCATTGACGGCGTGTCGCAGCGTTGCGAAATTGCCAAGGTCGACCGGTCTCTCGATGGGGCCCGTCTCAACAATTTTGGCCTCTCCCTCG
AAGAGGCCAAGGACATACAGCGGCGCTTACAACAGGAACTGACCCAGTTTCAGACGGATCAAGCCGCCCAGCGAGATCGGAAGTGCCAAGACTGTAACCG
CCGTCGCTCGGTGCATGATAGTAGGTACCGCACGATCCATTCGCTCTTTGGATCTTGCCACGTGCGTGTGCCGCGGTGGTGCCGCTGTGCATGCGGATCG
ACCGCGAGGTTGGGCACGGGATGCGTCGAAACCCTGTTGAATGGCCGAGCTACCCCGGAGTTGGAGCGCATCCAAGCCGAACTGGGCTCCCGGTTGTCAT
TTCGAGAAGCAGCCCGTGTACTTGACATCTTTGTGCCGGCCACGCGGCCTCATAATCATCGAACCGTAAGCAACCGGCTGGGCAAGGTTGCCGATCAGAT
CGAAAAGTGGGACGTCGCGGGCCCCTATCGTATCAGTCGCGCCGGCAAGTCTCCAGTTTCCGTTTTCATTGATGGCGCCTATATTCGCGCGGTTCCCGGC
TATCAAAGCCGGCATTTCGAGATCGCGATGGGACGCGTGGTTGCGCAAGGCCGAGCACCGCGTCAGTTTGCCGGTGCGCCGAATATTGCTACCGGCAAAC
ACGATATCGTTCGCGCGGCGATGCGCGCGCAAGGATGGCTGCCTGGCCGAGACGTCACCGTCTTTAGTGACGGAGAGGTCGGGCTGCAGAGCATCGTGCT
CAGCGCAACACGCCAGCCCGTCACGCATATTCTCGACTGGTTTCACCTGTCGATGCGGCTGCGGCACATTGAGCAGGCCTGGGAGGGCATCAGGCATCTG
CAAAATCTGGATGTCTATCTGCAAAGCGTCGCGGTCCATGTGCCCAGGCTTCGGTATCTCCTCTGGAGCGGATATGTCCGAGAGGCAAGCGAAGCCGTAA
AGCAGATGCTCGGCCAATTGGATCAGCATCTCGGTTTTCACGACGCCCCCGGCAAACTCAGGCGCCTATACGAGCTGATCAACAATCTTGGCACCTACCT
GGGGCAGAACGCAGCTTCGATCGTCAACTACTGTCGGCGATACTGGTCCGGTCAGCCGATATCCAGTTCGCCGGCCGAAAGTGCCGCCAACAGCCTCGTC
AATGCCCGTATGAATAAGAAGCGGCAAATGCGTTGGACACCGATCGGCGCTCATCGGGTTCTTCAAGTCCGAGCCGCCGTCGCGGACGGCCGTCTCAAAC
AAGCAAAGCTCGACCTCGCAGCCTAACCCCCAGCTTTTTCCCGCTCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1347 bp452 aa801426+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MASHLKMIISVELVGIDGVSQRCEIAKVDRSLDGARLNNFGLSLEEAKDIQRRLQQELTQFQTDQAAQRDRKCQDCNRRRSVHDSRYRTIHSLFGSCHVR
VPRWCRCACGSTARLGTGCVETLLNGRATPELERIQAELGSRLSFREAARVLDIFVPATRPHNHRTVSNRLGKVADQIEKWDVAGPYRISRAGKSPVSVF
IDGAYIRAVPGYQSRHFEIAMGRVVAQGRAPRQFAGAPNIATGKHDIVRAAMRAQGWLPGRDVTVFSDGEVGLQSIVLSATRQPVTHILDWFHLSMRLRH
IEQAWEGIRHLQNLDVYLQSVAVHVPRLRYLLWSGYVREASEAVKQMLGQLDQHLGFHDAPGKLRRLYELINNLGTYLGQNAASIVNYCRRYWSGQPISS
SPAESAANSLVNARMNKKRQMRWTPIGAHRVLQVRAAVADGRLKQAKLDLAA

 

Blast result :
Comments
ISSfr3 is 57% aa similar to ISSusp3.
References
1] ISfinder annotation (2013)
2] Weidner,S., Becker,A., Bonilla,I., Jaenicke,S., Lloret,J., Margaret,I., Puhler,A., Ruiz-Sainz,J.E., Schneiker-Bekel,S., Szczepanowski,R., Vinardell,J.M., Zehner,S. and Gottfert,M. (2012) J. Bacteriol. 194 (6), 1617-1618.