ISBte2

  • Family ISKra4
  • Group ISAzba1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AKAU01000277 ND Burkholderia terrae
Burkholderia terrae BS001
DNA section
IS Length : 1517 bp

Ends


IR Length : 23/24

IRL : GGGAGCGTTAAATACCTTGGGGTTTCAGCGCAGGGCGCCTAGGATTCCGG
IRR : GGGAGCGTTAAAAACCTTGGGGTTGTAACTGCTGCGATGCCAACCCGAGC

Insertion site


Left flankDirect repeatRight flankDR Length
CGCCCCAAGTTTGCTCTATT0

DNA sequence

GGGAGCGTTAAATACCTTGGGGTTTCAGCGCAGGGCGCCTAGGATTCCGGCAATCATGGCCGCCGGAGTTGGAGATGAAAGTCACAATTCGCGTCGAGAT
CACCACCGATTGGGATGAAACAGGCACGTTCGAAATCTGTCAGCTCGAACGTCCCTATCGCCAACTTGAGCCGGACAAGGTCGGGCTGTCATTGGCCGAA
GGAAAAGATTTGCTGCACAGGCTTCAGAAGATTGTCGTCGCTGCGCAAGCTGAAGAGGTCTGCACGCTGCGACGCTTCTGGACCCGTTGTCACCGGTTCC
TCGAACTCAAGGATCGGCGGATCCGCAAGGTGGATACGGTCTTCGGTACCGTGCCCTTTCGCAGTGCCCGGATCGTTTGCTGTCCATGCGAGACGCCGTT
GCAGATGGAGTATCCGTACAGTCCGATGACCGAATTCGTTCCGGAGCGGGCGACCACGGAACTACTGTCGCTTGAGGCCAGGCTTTCGGCACAGATGCCG
TATCGGCAGGTCGTTACCATGATGCGCGAGTTCCTGCCTGTGCGGGAGACATCGAACCATGTGACCGTGCGAAACAGGGCGCTACGCGTGGGTGCGCGCA
TTGAAGCGGTTCAGCCAGCTGCATGTCGCGCACCGAAGGAAGAGACGGAGTGGACCCTGACCATCGACGGAGGATTCGTTCGAGGGCGACGCGAATCTGA
GTGTTCCAGCTTTGAGGTTGTGACGGGGCGCTTGAGCGCCAGAGACCAGACGTCGCGCGTATTCGCGTTCGTGAGAAACAGGTTGCCGGATATCGTGGAT
CGCCTCACCACCCTTGTGAAGGCCGCAACCGGAAGCGATCAACCGAAACTGTCGGTCATAACCGATGGTGCCAATGGCCTGCAGTCAATCGCTTGTCGAT
TGCCGTTTTCTCCTACACCTGTCCTGGACTGGTTCCATATATCAATGAGGGTGAGGTATCTCGAGCTGATCATCAAGGGCATGGGTGGTGCGCGGACGGA
AACGGAAAAGGCCGCCCGACGTGTGCTGATCTCCGGCGTTGACAAGCTGCGCTGGTGCTTCTGGCATGCCAGGCTGGAGAAGGCGAAAGACCGGATGCAG
GGCATCCTGCTCCTCTGCCGGGTGATCGTGGCTGAAACGCCGGGCGTTGTAGAAAGTCTGGCGCAGCTCGACTATCGGACTCGTGAACTTGTGGAATACG
TCGAAGCGAATGGCGGATCAACGATGAACTATGGCGCACAACATCGTCGTGGCAAACCTATCTCGACCGCCTCGGCCGAGTCTGCAGTCAATCAGGTGCT
CAATCAGCGCATGTGCAAGCGGCAACAGATGCGCTGGTCTCCGATCGGGGCTCATCTGCTTGCCCAGGTCCGATGTGCTGTCATCAACGGTGACCTTGTT
CAAGACTTGCGAGATATGAGCCACCACGGCAACCATTGTCGCGCGAAGCTGCCGAGTTCCTGGCGCAGCTCGGGTTGGCATCGCAGCAGTTACAACCCCA
AGGTTTTTAACGCTCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1443 bp481 aa751517+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKVTIRVEITTDWDETGTFEICQLERPYRQLEPDKVGLSLAEGKDLLHRLQKIVVAAQAEEVCTLRRFWTRCHRFLELKDRRIRKVDTVFGTVPFRSARI
VCCPCETPLQMEYPYSPMTEFVPERATTELLSLEARLSAQMPYRQVVTMMREFLPVRETSNHVTVRNRALRVGARIEAVQPAACRAPKEETEWTLTIDGG
FVRGRRESECSSFEVVTGRLSARDQTSRVFAFVRNRLPDIVDRLTTLVKAATGSDQPKLSVITDGANGLQSIACRLPFSPTPVLDWFHISMRVRYLELII
KGMGGARTETEKAARRVLISGVDKLRWCFWHARLEKAKDRMQGILLLCRVIVAETPGVVESLAQLDYRTRELVEYVEANGGSTMNYGAQHRRGKPISTAS
AESAVNQVLNQRMCKRQQMRWSPIGAHLLAQVRCAVINGDLVQDLRDMSHHGNHCRAKLPSSWRSSGWHRSSYNPKVFNAPLLYCRPRMLEQILPAAPGV
SAPRAFR

 

Blast result :
Comments
ISBte2 is 51% aa similar to ISRssp6.
The STOP codon is missing, the transposase was in silico truncated at the end of the IS.
References
1] ISfinder annotation (2013)
2] Nazir,R., Hansen,M.A., Sorensen,S. and van Elsas,J.D. (2012) Direct submission GenBank.