ISBte2
- Family ISKra4
- Group ISAzba1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AKAU01000277 | ND | Burkholderia terrae | Burkholderia terrae BS001 |
DNA section
IS Length : 1517 bp
Ends
IR Length : 23/24
IRL : GGGAGCGTTAAATACCTTGGGGTTTCAGCGCAGGGCGCCTAGGATTCCGG
IRR : GGGAGCGTTAAAAACCTTGGGGTTGTAACTGCTGCGATGCCAACCCGAGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGCCCCAAGT | TTGCTCTATT | 0 |
DNA sequence
GGGAGCGTTAAATACCTTGGGGTTTCAGCGCAGGGCGCCTAGGATTCCGGCAATCATGGCCGCCGGAGTTGGAGATGAAAGTCACAATTCGCGTCGAGAT
CACCACCGATTGGGATGAAACAGGCACGTTCGAAATCTGTCAGCTCGAACGTCCCTATCGCCAACTTGAGCCGGACAAGGTCGGGCTGTCATTGGCCGAA
GGAAAAGATTTGCTGCACAGGCTTCAGAAGATTGTCGTCGCTGCGCAAGCTGAAGAGGTCTGCACGCTGCGACGCTTCTGGACCCGTTGTCACCGGTTCC
TCGAACTCAAGGATCGGCGGATCCGCAAGGTGGATACGGTCTTCGGTACCGTGCCCTTTCGCAGTGCCCGGATCGTTTGCTGTCCATGCGAGACGCCGTT
GCAGATGGAGTATCCGTACAGTCCGATGACCGAATTCGTTCCGGAGCGGGCGACCACGGAACTACTGTCGCTTGAGGCCAGGCTTTCGGCACAGATGCCG
TATCGGCAGGTCGTTACCATGATGCGCGAGTTCCTGCCTGTGCGGGAGACATCGAACCATGTGACCGTGCGAAACAGGGCGCTACGCGTGGGTGCGCGCA
TTGAAGCGGTTCAGCCAGCTGCATGTCGCGCACCGAAGGAAGAGACGGAGTGGACCCTGACCATCGACGGAGGATTCGTTCGAGGGCGACGCGAATCTGA
GTGTTCCAGCTTTGAGGTTGTGACGGGGCGCTTGAGCGCCAGAGACCAGACGTCGCGCGTATTCGCGTTCGTGAGAAACAGGTTGCCGGATATCGTGGAT
CGCCTCACCACCCTTGTGAAGGCCGCAACCGGAAGCGATCAACCGAAACTGTCGGTCATAACCGATGGTGCCAATGGCCTGCAGTCAATCGCTTGTCGAT
TGCCGTTTTCTCCTACACCTGTCCTGGACTGGTTCCATATATCAATGAGGGTGAGGTATCTCGAGCTGATCATCAAGGGCATGGGTGGTGCGCGGACGGA
AACGGAAAAGGCCGCCCGACGTGTGCTGATCTCCGGCGTTGACAAGCTGCGCTGGTGCTTCTGGCATGCCAGGCTGGAGAAGGCGAAAGACCGGATGCAG
GGCATCCTGCTCCTCTGCCGGGTGATCGTGGCTGAAACGCCGGGCGTTGTAGAAAGTCTGGCGCAGCTCGACTATCGGACTCGTGAACTTGTGGAATACG
TCGAAGCGAATGGCGGATCAACGATGAACTATGGCGCACAACATCGTCGTGGCAAACCTATCTCGACCGCCTCGGCCGAGTCTGCAGTCAATCAGGTGCT
CAATCAGCGCATGTGCAAGCGGCAACAGATGCGCTGGTCTCCGATCGGGGCTCATCTGCTTGCCCAGGTCCGATGTGCTGTCATCAACGGTGACCTTGTT
CAAGACTTGCGAGATATGAGCCACCACGGCAACCATTGTCGCGCGAAGCTGCCGAGTTCCTGGCGCAGCTCGGGTTGGCATCGCAGCAGTTACAACCCCA
AGGTTTTTAACGCTCCC
CACCACCGATTGGGATGAAACAGGCACGTTCGAAATCTGTCAGCTCGAACGTCCCTATCGCCAACTTGAGCCGGACAAGGTCGGGCTGTCATTGGCCGAA
GGAAAAGATTTGCTGCACAGGCTTCAGAAGATTGTCGTCGCTGCGCAAGCTGAAGAGGTCTGCACGCTGCGACGCTTCTGGACCCGTTGTCACCGGTTCC
TCGAACTCAAGGATCGGCGGATCCGCAAGGTGGATACGGTCTTCGGTACCGTGCCCTTTCGCAGTGCCCGGATCGTTTGCTGTCCATGCGAGACGCCGTT
GCAGATGGAGTATCCGTACAGTCCGATGACCGAATTCGTTCCGGAGCGGGCGACCACGGAACTACTGTCGCTTGAGGCCAGGCTTTCGGCACAGATGCCG
TATCGGCAGGTCGTTACCATGATGCGCGAGTTCCTGCCTGTGCGGGAGACATCGAACCATGTGACCGTGCGAAACAGGGCGCTACGCGTGGGTGCGCGCA
TTGAAGCGGTTCAGCCAGCTGCATGTCGCGCACCGAAGGAAGAGACGGAGTGGACCCTGACCATCGACGGAGGATTCGTTCGAGGGCGACGCGAATCTGA
GTGTTCCAGCTTTGAGGTTGTGACGGGGCGCTTGAGCGCCAGAGACCAGACGTCGCGCGTATTCGCGTTCGTGAGAAACAGGTTGCCGGATATCGTGGAT
CGCCTCACCACCCTTGTGAAGGCCGCAACCGGAAGCGATCAACCGAAACTGTCGGTCATAACCGATGGTGCCAATGGCCTGCAGTCAATCGCTTGTCGAT
TGCCGTTTTCTCCTACACCTGTCCTGGACTGGTTCCATATATCAATGAGGGTGAGGTATCTCGAGCTGATCATCAAGGGCATGGGTGGTGCGCGGACGGA
AACGGAAAAGGCCGCCCGACGTGTGCTGATCTCCGGCGTTGACAAGCTGCGCTGGTGCTTCTGGCATGCCAGGCTGGAGAAGGCGAAAGACCGGATGCAG
GGCATCCTGCTCCTCTGCCGGGTGATCGTGGCTGAAACGCCGGGCGTTGTAGAAAGTCTGGCGCAGCTCGACTATCGGACTCGTGAACTTGTGGAATACG
TCGAAGCGAATGGCGGATCAACGATGAACTATGGCGCACAACATCGTCGTGGCAAACCTATCTCGACCGCCTCGGCCGAGTCTGCAGTCAATCAGGTGCT
CAATCAGCGCATGTGCAAGCGGCAACAGATGCGCTGGTCTCCGATCGGGGCTCATCTGCTTGCCCAGGTCCGATGTGCTGTCATCAACGGTGACCTTGTT
CAAGACTTGCGAGATATGAGCCACCACGGCAACCATTGTCGCGCGAAGCTGCCGAGTTCCTGGCGCAGCTCGGGTTGGCATCGCAGCAGTTACAACCCCA
AGGTTTTTAACGCTCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1443 bp | 481 aa | 75 | 1517 | + | No |
Chemistry : DDE
ORF sequence :
MKVTIRVEITTDWDETGTFEICQLERPYRQLEPDKVGLSLAEGKDLLHRLQKIVVAAQAEEVCTLRRFWTRCHRFLELKDRRIRKVDTVFGTVPFRSARI
VCCPCETPLQMEYPYSPMTEFVPERATTELLSLEARLSAQMPYRQVVTMMREFLPVRETSNHVTVRNRALRVGARIEAVQPAACRAPKEETEWTLTIDGG
FVRGRRESECSSFEVVTGRLSARDQTSRVFAFVRNRLPDIVDRLTTLVKAATGSDQPKLSVITDGANGLQSIACRLPFSPTPVLDWFHISMRVRYLELII
KGMGGARTETEKAARRVLISGVDKLRWCFWHARLEKAKDRMQGILLLCRVIVAETPGVVESLAQLDYRTRELVEYVEANGGSTMNYGAQHRRGKPISTAS
AESAVNQVLNQRMCKRQQMRWSPIGAHLLAQVRCAVINGDLVQDLRDMSHHGNHCRAKLPSSWRSSGWHRSSYNPKVFNAPLLYCRPRMLEQILPAAPGV
SAPRAFR
VCCPCETPLQMEYPYSPMTEFVPERATTELLSLEARLSAQMPYRQVVTMMREFLPVRETSNHVTVRNRALRVGARIEAVQPAACRAPKEETEWTLTIDGG
FVRGRRESECSSFEVVTGRLSARDQTSRVFAFVRNRLPDIVDRLTTLVKAATGSDQPKLSVITDGANGLQSIACRLPFSPTPVLDWFHISMRVRYLELII
KGMGGARTETEKAARRVLISGVDKLRWCFWHARLEKAKDRMQGILLLCRVIVAETPGVVESLAQLDYRTRELVEYVEANGGSTMNYGAQHRRGKPISTAS
AESAVNQVLNQRMCKRQQMRWSPIGAHLLAQVRCAVINGDLVQDLRDMSHHGNHCRAKLPSSWRSSGWHRSSYNPKVFNAPLLYCRPRMLEQILPAAPGV
SAPRAFR
Blast result :
Comments
ISBte2 is 51% aa similar to ISRssp6.
The STOP codon is missing, the transposase was in silico truncated at the end of the IS.
The STOP codon is missing, the transposase was in silico truncated at the end of the IS.
References
1] ISfinder annotation (2013)
2] Nazir,R., Hansen,M.A., Sorensen,S. and van Elsas,J.D. (2012) Direct submission GenBank.
2] Nazir,R., Hansen,M.A., Sorensen,S. and van Elsas,J.D. (2012) Direct submission GenBank.