ISMet1

  • Family ISKra4
  • Group ISAzba1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FO000002 ND Methylocystis sp.
Methylocystis sp. SC2 plasmid 2
DNA section
IS Length : 1557 bp

Ends


IR Length : 26/28

IRL : GGGACCGTTAAATTAACTGGGGCGCCACGGAGCTTTAACTTCTGTTAATG
IRR : GGGACCGTTAAATTAACTGGGGTGCTACTCTGCTCTGAGGAGTGGCGGCG

Insertion site


Left flankDirect repeatRight flankDR Length
AACGGCCAGACCCGTCCGCG0

DNA sequence

GGGACCGTTAAATTAACTGGGGCGCCACGGAGCTTTAACTTCTGTTAATGAAAAGAGTTGCCGGCTTCGTAGGAGACGGCAATGCGGTGGATGATTACAA
TTGAAGGCACGGATGAATTTGGCGCGGCGCATCGGTCCGAGATAGCTCTGGAAAAAGATTTGAACAGTTTGACGGCGGGAGCTGTGGGCTTTTCTATCGA
GGACGGCAAGACGATCATGGCCCACCTGCAGCAGGTCATCGTGAAGCAGCAATGCGAGACCTACGTCTTGGTTCGCCGATTTTGCATGGATTGCGAGCGC
TTTCGACGCATCAAGGACTACAGCAAGCGAAAGATCAGAACGGTGTTTGGCTGCGTCGAGGTTCGTAATCCACGCATCCTGAATTGCCAACGCTGCGTGC
CGTATTTCCGCGACGCTTCAGCAGTCCTGCGGGATTTTTTCCCCGACCAGGCGACGCCGGAATTGATGGAGCTATCGGCTCGCCTCGGCAGTTTGATGCC
CTACCGCAAAGCGGCAGATGTCATCGCGGAGTTTTTGCCCGTCAAATCGTCTGAGTCCTTCGTCACGGTTCGCCATCGCACGCTCGCTCTCGGCAAGCGG
CTCGATGAAAAGGCGCGAGATCGCGCCTGGTTCGATCCGCCACACGCTGACGAGCGCGAGCAGATCGAGCTTGATCTGCCAAATGATCCCGAGCGAGAGT
TCGTTGTCAGCATTGACACAGCCCATATCAAAGGTGCCTCCGAGGCGGACGGGCGAACCTTTGAGATCGCAGTTGCGCGATGCGGCCGCGGACGACGCGG
CTCCCGTCCCGGTCACTATTTCGTGACGGCAGACACTTCGAAACAAGAACTACGGCTGCGCACGCTTCAAGCGCTTCAGAGCGAGGGCTACGTGGGTCGC
GGCGAAATTACCGTGTTGTCTGATGGCGCGGAGATTATGAAGCGGCTACCTCGCAATTTGCCGCGTCCGACCAGGCATATCGTTGATTGGTTCCACATCG
CTATGAAAATCCAGCCCCTACAGCAAGTCGCCGATCATATCGTTCGCTGGCGCGACGAATGGACAAATGAAACCGTCGTTTTCGATGAGGAGATCCGCGC
CTTGAAGTGGAAGCTGTGGCATGGACAGGTCGATCGAGCGATAGAACACCTCGGGGAAATCATCGCAGACATGTCGATGTTACGCGAGCAAGGCGACCTG
GGCGCCGGCCGCATATGGCAATTGGCGCAACCGCTTCTGACTTACATCCGTCAAAACAAGTCTGCGATCGTCGATTACGGAGCTCGATATCGGTCGGGAC
GACGGATCGCCACTGCGCTGGCCGAATCCGCAGTGAATTCGCTGACCGCACGCCGCATGGTCAAAAAACAACAGATGCGATGGTCAAAGCGCGGCGCTCA
TCTGATGCTGCAGGTGCGCGCCGCGGTCATGAACGGAAACTTGCGTGAGCAGTTGTCCTACGAACCGCCAGTCTTCAAATCGCGTTTGAACTGACTGTTT
CAGCCGACGCCGCCACTCCTCAGAGCAGAGTAGCACCCCAGTTAATTTAACGGTCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1413 bp467 aa821494+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MITIEGTDEFGAAHRSEIALEKDLNSLTAGAVGFSIEDGKTIMAHLQQVIVKQQCETYVLVRRFCMDCERFRRIKDYSKRKIRTVFGCVEVRNPRILNCQ
RCVPYFRDASAVLRDFFPDQATPELMELSARLGSLMPYRKAADVIAEFLPVKSSESFVTVRHRTLALGKRLDEKARDRAWFDPPHADEREQIELDLPNDP
EREFVVSIDTAHIKGASEADGRTFEIAVARCGRGRRGSRPGHYFVTADTSKQELRLRTLQALQSEGYVGRGEITVLSDGAEIMKRLPRNLPRPTRHIVDW
FHIAMKIQPLQQVADHIVRWRDEWTNETVVFDEEIRALKWKLWHGQVDRAIEHLGEIIADMSMLREQGDLGAGRIWQLAQPLLTYIRQNKSAIVDYGARY
RSGRRIATALAESAVNSLTARRMVKKQQMRWSKRGAHLMLQVRAAVMNGNLREQLSYEPPVFKSRLN

 

Blast result :
Comments
ISMet1 is 52% aa similar to ISAzba1.
References
1] ISfinder annotation (2013)
2] Dam,B., Kube,M., Dam,S., Reinhardt,R. and Liesack,W. (2012) Appl. Environ. Microbiol. 78 (12), 4373-4379.