ISBte1
- Family ISKra4
- Group ISAzba1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AKAU01000295 | ND | Burkholderia terrae | Burkholderia terrae BS001 |
DNA section
IS Length : 2143 bp
Ends
IR Length : 21/23
IRL : GAGACCACGCCAAAGCGGGGGCTGGAATCGGGTCTGCGAATATGACTGAA
IRR : GAGACCGCGCCAAAGCAGGGGCTATGCCGCGATATCGTGAGCGTGCTCGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GATTGAAAAT | CTAATACGCT | 0 |
DNA sequence
GAGACCACGCCAAAGCGGGGGCTGGAATCGGGTCTGCGAATATGACTGAAGGATGCGTCTATAGTGCCTCGATGGACTCCAGCCCTTCCGAAGCGACTTC
CGTTCTCCAGTTGCGAATCAGTCTACGCGGCGTCAGCCCGCCGGTCTGGCGGCGACTCTTGATTCCCGAGCAAATCACGATTGCGCAGCTGCATCAGGTG
ATGCAGCTCGCCATGGGTTGGAACGACGAGCACCTGCACCGGTTCGTCATCCGCGGGTGGCGTTACGGCGGACATCGCGACGGCGCGTTGCAATTCTTCG
ACGGCCCAGACACCCTGTCCGTGGCGGCATTTGGCCTGCACGAACATGAGCGTTTTGCCTATCTGTACGACTTCACCGCGTGCTGGTTACATGACGTGCG
CGTCGAGCGGCGAACGTGCAACCAGCGGTCAAGGCCACTACCACGCTGTGTCGCGGGCGCCGGGCGTTGTCCGCCCGAAGAGGCCGGAGGTCCCGAGAGA
TACATGACGGCCCTGGAAGTGCACAGCGAGTTCGAGTTTTTCGAGTGGCTCGAGACGCTGCGCGAAAACCCGATCGAGGTGAATCATCTGCGCGTTGAGG
CCGATGAATGGCTCTTCTGGCTGGATCGGCGTTTCGACTGGCGAGCGGCGAATGAACGGCTGCACACGTTGGCGCTGTAAGCTGACTACCCAGGCGACGT
GCCGGGCGGGAGGCTGCCATGCAGATCAGCGTGCAGATTGTGGTGCAGACGGAAGTCGACGCGCAGGCGCGCGTCACGGAGATTGCCCATTTCGAACGGG
ATAGTTTCGAGGCCGGCTCACTCGGCCTGCATCTTGAGGAGGCGAAGGCGCTGCTGGGCCGGCTGCAGCGCTCGATGATTGACGCACAGGCCGCTGAAGC
GATTGCGCGGCTGAGCATGTGCCCGAACTGCGGCTCCCGTCTGACCGTCAAGGGCCGCCGTCGCCTGGTCTACCGCTCGGTGTTTGGCCGGCTATCGTTT
GATAGCCCGCGGCTGTACCAATGCCGTTGCTCCGGGAGCGCGCGCCGGTCCTTCAGCCCGCTGGCCAGTTGCCTGCGTGAGCGGACGAGTCCCGAATTGC
AGTATCTCGAGGCCAGGTTTGCCGCGTTGATGTCGTATGGGCTCACCGTCCGGGTACTGGAGGAGGTATTACCGCTTGAGCATGTGCTGGCGGCTACCAC
GATCCGGAGGCGCGTCGCCACACTGGGCCATCGCCTTGAGAGCTCGAACGCCGCGATCGCCGCCGAGCAACGGCGATACGTCGATCTGTCTGCTGGCCGA
TGCGCTATTCCGCAGCACAATTCAATACGCGCCGTGGGAATCGACGGCGGATACATCCGCCTGGCCGGACACAGCAGTCGGCAAGACGGCTGGTTCGAAG
TCATCGTCGGAAAATCACTACGCGACGACGGTCGCGGACACAGCTTCGCTTACGTTCGCACACTCGAGCACGAGCCTGCCGATCGGATGCTGGCATTTCT
TGCGCAGGAAGGCGTCGGCGCGGACCAGCCGGTAACTTTCCTGTCCGACGGCGGCGACACCGTTCGCCGCGCCCAGCTCGACTTTGGCGATTGCGGCGAG
AGGGTACTCGACTGGTTTCACGTCGCCATGCGGGTACAGAATCTCGAACAGATGATCAAGGGGTTACCGGACCGCGACGAACGGTCAAGTGTCGACGTGC
TGATCGACAGGCTGCGCAGTGCAAAGTGGCACCTCTGGCACGGTCGCCCCTATCCGGCACTGCAGCGGCTTGAAAGCCTGGGCTGGGAACTCGCAACGGA
TGGCAGTCCCGGGGAGACCAGGCTGCTGGCCAAACTGGAGGAGTTCATCGGTTACCTCGAGAACAACCAGCGCTTTATCGTGAACTACGGAGACCGCTAC
CGTCATGGCGAGCCAATCACCTCGAGCTTCGTCGAGTCGGCTGTCAACCAGGTGGTCAGCAAGCGTTTTGTGAAGCGGCAGCAGATGGCGTGGCGACCGG
CTCATGCGCAAGGCCTTCTCCAGGTGAGGACGGCCGTCCTGAATGAGCAGTTACGATCATGCTTCGAGCGATGGTATCCGACGCTCGCGAGCAACGAGCA
CGCTCACGATATCGCGGCATAGCCCCTGCTTTGGCGCGGTCTC
CGTTCTCCAGTTGCGAATCAGTCTACGCGGCGTCAGCCCGCCGGTCTGGCGGCGACTCTTGATTCCCGAGCAAATCACGATTGCGCAGCTGCATCAGGTG
ATGCAGCTCGCCATGGGTTGGAACGACGAGCACCTGCACCGGTTCGTCATCCGCGGGTGGCGTTACGGCGGACATCGCGACGGCGCGTTGCAATTCTTCG
ACGGCCCAGACACCCTGTCCGTGGCGGCATTTGGCCTGCACGAACATGAGCGTTTTGCCTATCTGTACGACTTCACCGCGTGCTGGTTACATGACGTGCG
CGTCGAGCGGCGAACGTGCAACCAGCGGTCAAGGCCACTACCACGCTGTGTCGCGGGCGCCGGGCGTTGTCCGCCCGAAGAGGCCGGAGGTCCCGAGAGA
TACATGACGGCCCTGGAAGTGCACAGCGAGTTCGAGTTTTTCGAGTGGCTCGAGACGCTGCGCGAAAACCCGATCGAGGTGAATCATCTGCGCGTTGAGG
CCGATGAATGGCTCTTCTGGCTGGATCGGCGTTTCGACTGGCGAGCGGCGAATGAACGGCTGCACACGTTGGCGCTGTAAGCTGACTACCCAGGCGACGT
GCCGGGCGGGAGGCTGCCATGCAGATCAGCGTGCAGATTGTGGTGCAGACGGAAGTCGACGCGCAGGCGCGCGTCACGGAGATTGCCCATTTCGAACGGG
ATAGTTTCGAGGCCGGCTCACTCGGCCTGCATCTTGAGGAGGCGAAGGCGCTGCTGGGCCGGCTGCAGCGCTCGATGATTGACGCACAGGCCGCTGAAGC
GATTGCGCGGCTGAGCATGTGCCCGAACTGCGGCTCCCGTCTGACCGTCAAGGGCCGCCGTCGCCTGGTCTACCGCTCGGTGTTTGGCCGGCTATCGTTT
GATAGCCCGCGGCTGTACCAATGCCGTTGCTCCGGGAGCGCGCGCCGGTCCTTCAGCCCGCTGGCCAGTTGCCTGCGTGAGCGGACGAGTCCCGAATTGC
AGTATCTCGAGGCCAGGTTTGCCGCGTTGATGTCGTATGGGCTCACCGTCCGGGTACTGGAGGAGGTATTACCGCTTGAGCATGTGCTGGCGGCTACCAC
GATCCGGAGGCGCGTCGCCACACTGGGCCATCGCCTTGAGAGCTCGAACGCCGCGATCGCCGCCGAGCAACGGCGATACGTCGATCTGTCTGCTGGCCGA
TGCGCTATTCCGCAGCACAATTCAATACGCGCCGTGGGAATCGACGGCGGATACATCCGCCTGGCCGGACACAGCAGTCGGCAAGACGGCTGGTTCGAAG
TCATCGTCGGAAAATCACTACGCGACGACGGTCGCGGACACAGCTTCGCTTACGTTCGCACACTCGAGCACGAGCCTGCCGATCGGATGCTGGCATTTCT
TGCGCAGGAAGGCGTCGGCGCGGACCAGCCGGTAACTTTCCTGTCCGACGGCGGCGACACCGTTCGCCGCGCCCAGCTCGACTTTGGCGATTGCGGCGAG
AGGGTACTCGACTGGTTTCACGTCGCCATGCGGGTACAGAATCTCGAACAGATGATCAAGGGGTTACCGGACCGCGACGAACGGTCAAGTGTCGACGTGC
TGATCGACAGGCTGCGCAGTGCAAAGTGGCACCTCTGGCACGGTCGCCCCTATCCGGCACTGCAGCGGCTTGAAAGCCTGGGCTGGGAACTCGCAACGGA
TGGCAGTCCCGGGGAGACCAGGCTGCTGGCCAAACTGGAGGAGTTCATCGGTTACCTCGAGAACAACCAGCGCTTTATCGTGAACTACGGAGACCGCTAC
CGTCATGGCGAGCCAATCACCTCGAGCTTCGTCGAGTCGGCTGTCAACCAGGTGGTCAGCAAGCGTTTTGTGAAGCGGCAGCAGATGGCGTGGCGACCGG
CTCATGCGCAAGGCCTTCTCCAGGTGAGGACGGCCGTCCTGAATGAGCAGTTACGATCATGCTTCGAGCGATGGTATCCGACGCTCGCGAGCAACGAGCA
CGCTCACGATATCGCGGCATAGCCCCTGCTTTGGCGCGGTCTC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
639 bp | 212 aa | 42 | 680 | + | No |
Annotation : plasmid pRIA4b ORF-3 family proteinDescription :
ORF sequence :
MTEGCVYSASMDSSPSEATSVLQLRISLRGVSPPVWRRLLIPEQITIAQLHQVMQLAMGWNDEHLHRFVIRGWRYGGHRDGALQFFDGPDTLSVAAFGLH
EHERFAYLYDFTACWLHDVRVERRTCNQRSRPLPRCVAGAGRCPPEEAGGPERYMTALEVHSEFEFFEWLETLRENPIEVNHLRVEADEWLFWLDRRFDW
RAANERLHTLAL
EHERFAYLYDFTACWLHDVRVERRTCNQRSRPLPRCVAGAGRCPPEEAGGPERYMTALEVHSEFEFFEWLETLRENPIEVNHLRVEADEWLFWLDRRFDW
RAANERLHTLAL
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1404 bp | 467 aa | 719 | 2122 | + | No |
Chemistry : DDE
ORF sequence :
MQISVQIVVQTEVDAQARVTEIAHFERDSFEAGSLGLHLEEAKALLGRLQRSMIDAQAAEAIARLSMCPNCGSRLTVKGRRRLVYRSVFGRLSFDSPRLY
QCRCSGSARRSFSPLASCLRERTSPELQYLEARFAALMSYGLTVRVLEEVLPLEHVLAATTIRRRVATLGHRLESSNAAIAAEQRRYVDLSAGRCAIPQH
NSIRAVGIDGGYIRLAGHSSRQDGWFEVIVGKSLRDDGRGHSFAYVRTLEHEPADRMLAFLAQEGVGADQPVTFLSDGGDTVRRAQLDFGDCGERVLDWF
HVAMRVQNLEQMIKGLPDRDERSSVDVLIDRLRSAKWHLWHGRPYPALQRLESLGWELATDGSPGETRLLAKLEEFIGYLENNQRFIVNYGDRYRHGEPI
TSSFVESAVNQVVSKRFVKRQQMAWRPAHAQGLLQVRTAVLNEQLRSCFERWYPTLASNEHAHDIAA
QCRCSGSARRSFSPLASCLRERTSPELQYLEARFAALMSYGLTVRVLEEVLPLEHVLAATTIRRRVATLGHRLESSNAAIAAEQRRYVDLSAGRCAIPQH
NSIRAVGIDGGYIRLAGHSSRQDGWFEVIVGKSLRDDGRGHSFAYVRTLEHEPADRMLAFLAQEGVGADQPVTFLSDGGDTVRRAQLDFGDCGERVLDWF
HVAMRVQNLEQMIKGLPDRDERSSVDVLIDRLRSAKWHLWHGRPYPALQRLESLGWELATDGSPGETRLLAKLEEFIGYLENNQRFIVNYGDRYRHGEPI
TSSFVESAVNQVVSKRFVKRQQMAWRPAHAQGLLQVRTAVLNEQLRSCFERWYPTLASNEHAHDIAA
Blast result :
Comments
ISBte1 is 59% aa (ORFB : the transposase) similar to ISAfe13.
ORFA is a passenger gene annotated as Plasmid pRiA4b ORF-3-like protein.
ORFA is a passenger gene annotated as Plasmid pRiA4b ORF-3-like protein.
References
1] ISfidner annotation (2013)
2] Nazir,R., Hansen,M.A., Sorensen,S. and van Elsas,J.D. (2012) Direct submission GenBank.
2] Nazir,R., Hansen,M.A., Sorensen,S. and van Elsas,J.D. (2012) Direct submission GenBank.