ISBte1

  • Family ISKra4
  • Group ISAzba1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AKAU01000295 ND Burkholderia terrae
Burkholderia terrae BS001
DNA section
IS Length : 2143 bp

Ends


IR Length : 21/23

IRL : GAGACCACGCCAAAGCGGGGGCTGGAATCGGGTCTGCGAATATGACTGAA
IRR : GAGACCGCGCCAAAGCAGGGGCTATGCCGCGATATCGTGAGCGTGCTCGT

Insertion site


Left flankDirect repeatRight flankDR Length
GATTGAAAATCTAATACGCT0

DNA sequence

GAGACCACGCCAAAGCGGGGGCTGGAATCGGGTCTGCGAATATGACTGAAGGATGCGTCTATAGTGCCTCGATGGACTCCAGCCCTTCCGAAGCGACTTC
CGTTCTCCAGTTGCGAATCAGTCTACGCGGCGTCAGCCCGCCGGTCTGGCGGCGACTCTTGATTCCCGAGCAAATCACGATTGCGCAGCTGCATCAGGTG
ATGCAGCTCGCCATGGGTTGGAACGACGAGCACCTGCACCGGTTCGTCATCCGCGGGTGGCGTTACGGCGGACATCGCGACGGCGCGTTGCAATTCTTCG
ACGGCCCAGACACCCTGTCCGTGGCGGCATTTGGCCTGCACGAACATGAGCGTTTTGCCTATCTGTACGACTTCACCGCGTGCTGGTTACATGACGTGCG
CGTCGAGCGGCGAACGTGCAACCAGCGGTCAAGGCCACTACCACGCTGTGTCGCGGGCGCCGGGCGTTGTCCGCCCGAAGAGGCCGGAGGTCCCGAGAGA
TACATGACGGCCCTGGAAGTGCACAGCGAGTTCGAGTTTTTCGAGTGGCTCGAGACGCTGCGCGAAAACCCGATCGAGGTGAATCATCTGCGCGTTGAGG
CCGATGAATGGCTCTTCTGGCTGGATCGGCGTTTCGACTGGCGAGCGGCGAATGAACGGCTGCACACGTTGGCGCTGTAAGCTGACTACCCAGGCGACGT
GCCGGGCGGGAGGCTGCCATGCAGATCAGCGTGCAGATTGTGGTGCAGACGGAAGTCGACGCGCAGGCGCGCGTCACGGAGATTGCCCATTTCGAACGGG
ATAGTTTCGAGGCCGGCTCACTCGGCCTGCATCTTGAGGAGGCGAAGGCGCTGCTGGGCCGGCTGCAGCGCTCGATGATTGACGCACAGGCCGCTGAAGC
GATTGCGCGGCTGAGCATGTGCCCGAACTGCGGCTCCCGTCTGACCGTCAAGGGCCGCCGTCGCCTGGTCTACCGCTCGGTGTTTGGCCGGCTATCGTTT
GATAGCCCGCGGCTGTACCAATGCCGTTGCTCCGGGAGCGCGCGCCGGTCCTTCAGCCCGCTGGCCAGTTGCCTGCGTGAGCGGACGAGTCCCGAATTGC
AGTATCTCGAGGCCAGGTTTGCCGCGTTGATGTCGTATGGGCTCACCGTCCGGGTACTGGAGGAGGTATTACCGCTTGAGCATGTGCTGGCGGCTACCAC
GATCCGGAGGCGCGTCGCCACACTGGGCCATCGCCTTGAGAGCTCGAACGCCGCGATCGCCGCCGAGCAACGGCGATACGTCGATCTGTCTGCTGGCCGA
TGCGCTATTCCGCAGCACAATTCAATACGCGCCGTGGGAATCGACGGCGGATACATCCGCCTGGCCGGACACAGCAGTCGGCAAGACGGCTGGTTCGAAG
TCATCGTCGGAAAATCACTACGCGACGACGGTCGCGGACACAGCTTCGCTTACGTTCGCACACTCGAGCACGAGCCTGCCGATCGGATGCTGGCATTTCT
TGCGCAGGAAGGCGTCGGCGCGGACCAGCCGGTAACTTTCCTGTCCGACGGCGGCGACACCGTTCGCCGCGCCCAGCTCGACTTTGGCGATTGCGGCGAG
AGGGTACTCGACTGGTTTCACGTCGCCATGCGGGTACAGAATCTCGAACAGATGATCAAGGGGTTACCGGACCGCGACGAACGGTCAAGTGTCGACGTGC
TGATCGACAGGCTGCGCAGTGCAAAGTGGCACCTCTGGCACGGTCGCCCCTATCCGGCACTGCAGCGGCTTGAAAGCCTGGGCTGGGAACTCGCAACGGA
TGGCAGTCCCGGGGAGACCAGGCTGCTGGCCAAACTGGAGGAGTTCATCGGTTACCTCGAGAACAACCAGCGCTTTATCGTGAACTACGGAGACCGCTAC
CGTCATGGCGAGCCAATCACCTCGAGCTTCGTCGAGTCGGCTGTCAACCAGGTGGTCAGCAAGCGTTTTGTGAAGCGGCAGCAGATGGCGTGGCGACCGG
CTCATGCGCAAGGCCTTCTCCAGGTGAGGACGGCCGTCCTGAATGAGCAGTTACGATCATGCTTCGAGCGATGGTATCCGACGCTCGCGAGCAACGAGCA
CGCTCACGATATCGCGGCATAGCCCCTGCTTTGGCGCGGTCTC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
639 bp212 aa42680+No
ORF function : Passenger Gene
Annotation : plasmid pRIA4b ORF-3 family proteinDescription :

ORF sequence :

MTEGCVYSASMDSSPSEATSVLQLRISLRGVSPPVWRRLLIPEQITIAQLHQVMQLAMGWNDEHLHRFVIRGWRYGGHRDGALQFFDGPDTLSVAAFGLH
EHERFAYLYDFTACWLHDVRVERRTCNQRSRPLPRCVAGAGRCPPEEAGGPERYMTALEVHSEFEFFEWLETLRENPIEVNHLRVEADEWLFWLDRRFDW
RAANERLHTLAL

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1404 bp467 aa7192122+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQISVQIVVQTEVDAQARVTEIAHFERDSFEAGSLGLHLEEAKALLGRLQRSMIDAQAAEAIARLSMCPNCGSRLTVKGRRRLVYRSVFGRLSFDSPRLY
QCRCSGSARRSFSPLASCLRERTSPELQYLEARFAALMSYGLTVRVLEEVLPLEHVLAATTIRRRVATLGHRLESSNAAIAAEQRRYVDLSAGRCAIPQH
NSIRAVGIDGGYIRLAGHSSRQDGWFEVIVGKSLRDDGRGHSFAYVRTLEHEPADRMLAFLAQEGVGADQPVTFLSDGGDTVRRAQLDFGDCGERVLDWF
HVAMRVQNLEQMIKGLPDRDERSSVDVLIDRLRSAKWHLWHGRPYPALQRLESLGWELATDGSPGETRLLAKLEEFIGYLENNQRFIVNYGDRYRHGEPI
TSSFVESAVNQVVSKRFVKRQQMAWRPAHAQGLLQVRTAVLNEQLRSCFERWYPTLASNEHAHDIAA

 

Blast result :
Comments
ISBte1 is 59% aa (ORFB : the transposase) similar to ISAfe13.
ORFA is a passenger gene annotated as Plasmid pRiA4b ORF-3-like protein.
References
1] ISfidner annotation (2013)
2] Nazir,R., Hansen,M.A., Sorensen,S. and van Elsas,J.D. (2012) Direct submission GenBank.