ISLfe1

  • Family ISKra4
  • Group ISKra4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
GG693873.1 ND Leptospirillum ferrodiazotrophum
Leptospirillum ferrodiazotrophum
DNA section
IS Length : 1800 bp

Ends


IR Length : 23

IRL : GGGTGAGCGACAAATTTTAGGACGCGCCTCCCGTCAAGGATCTTGGGAAC
IRR : GGGTGAGCGACAAATTTTAGGACTTAGATATATCGTCTTAAGTCTTTGTT

Insertion site


Left flankDirect repeatRight flankDR Length
CAAGGGAGGCATCCTCAGGGGGCGCCCCA9

DNA sequence

GGGTGAGCGACAAATTTTAGGACGCGCCTCCCGTCAAGGATCTTGGGAACGACATGGCCCGCAGAACATTGACTGACAGACATGTTGATGGCCAGGCAAG
ACGCGCTGGACATTCCTGTATGATTTTGTTATGGATAGAAGGACGTTAGAAAAACTTCCCCCTTCTTCCATAGGAGCGTTCCATGAGCCCTCGAAAAAGA
CCCCCTGCGGACCCGACATCTCCCCCGGCCGATCAGGCCCAGGAAGCCCTTCGCACCATGGAGGCGGCCTTGCGTCAGAAGATTGGAGCGGCCCCGAAGG
GCTCCGACGAAAAGAGACATCTTCAGGAGCTTCTCTCTCTTCTTTCCGGACAAAAGACTCCCGAGGCTCCCCCCACGGCCTCAAAAGCCCCCACCCCCTC
GTTTGCCTCGATCCTCGAGGAGGTGAGCCAGCCGATGATCCGCTCCTCCCGACGATTGGACTTCGGAGCCATGGAGAGGGCCATGAAAGACCGGATGCTC
GAAGAGACGGCCCGAACCCTCGAGTCTCGCCTGAACGAGGAGATTACCCGCCACCCGGCCCCCTTCCGTTGTCCGGCCTGCGGGCGCCTCCTTCAGAGCA
AGGGGATGAAATCCAAGACCTTTATGACGTCGCTCGGAGAGATCACCCTCCGCCGGCGTTACGGGTTTTGTCGCTCCTGCCGGAAGGGGAGCTTCCCCGA
CGATGCCCGCCTGGGACTCGACGAGACAGGCGTCTCTCCCGAGGTTCAGTATCTGGCCGGCCTCTTTGGCGCCGAGACGGACTTTTTGAGAGCGAGCGAC
CTGCTTTTTTGCGCCGCTCGGATCCGGCTTCCGGAAAAGCAGGTCGAGCGGCTCGCCAAGTCCCTTGGGGAGCAGATCGCTCAAGACGAACGGGAGCATG
TCGAGCTCGAGCCTCACCGCCTCCCCCAGGGCCCCCTTTATATCGGGATGGATGGGACGGGTGTACCGATCCAGTCGCGCGAGACAGCCGGGAGACGCGG
CAAGCAGAAAGACGGCTCCTCCAAGACTCGCGAGGCCAAGATGATCGACATCTGGGAGGCCCATACGCAAAACGAGCGGGGAATCCCGATCCGGGACCCC
GGATCGGTCTCCTACTCGGCGGCCATCGAAAGTGCCTCCTGCCCGGACTTCGCGCAGATGCCCTCCGACTTTGCCCGGCGGGTCGAGCGCGAGGCCTCCC
GACGCGGGGCCGCACAGGCCCGTCAGATTGTCGTCATCGGCGATGGTGCCGCCTGGATCTGGAAAACCGCCGAATCCCTCTTTCCCGGAGCTCTCTGCAT
TGTGGACCGCTTCCATGCCAAGCAGCACCTCTCCGAACTCTCGAAGGCCCTCTTCGGCGACACTCCCAAGGCCAAGGAGTGGACCCATTGTCGCTACGAG
GAGCTCGATGAAGGTCGGATGGACGATCTGCTCAAGGAGATCGGAATCTACGCCTCCCGATTCCCGGAAGCCGCCCAATGCCGCACCTATTTTCAGAACA
ACCGGGAGCGAATGCGCTACCCGGAGTTCCGGGCCCTGGGGCTCTGTACCTCAAGCGGGGTCGTCGAGGCCGGCTGCAAGTCGATCGTCGGGGGCCGCCT
CAAAAAATCCGGCATGCACTGGAGCGTCGCCGGAGCCAACGCCATCCTGGCCCTGCGGTGCACGATCAAGAGCGGACGCTACGAGTCGTTCTGGGAGCGC
AAAGCCAGTCAATGGGCCGCCTGAATGGAGACATGCAATATAATGCAAAAAACAAAGACTTAAGACGATATATCTAAGTCCTAAAATTTGTCGCTCACCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1467 bp488 aa2581724+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MEAALRQKIGAAPKGSDEKRHLQELLSLLSGQKTPEAPPTASKAPTPSFASILEEVSQPMIRSSRRLDFGAMERAMKDRMLEETARTLESRLNEEITRHP
APFRCPACGRLLQSKGMKSKTFMTSLGEITLRRRYGFCRSCRKGSFPDDARLGLDETGVSPEVQYLAGLFGAETDFLRASDLLFCAARIRLPEKQVERLA
KSLGEQIAQDEREHVELEPHRLPQGPLYIGMDGTGVPIQSRETAGRRGKQKDGSSKTREAKMIDIWEAHTQNERGIPIRDPGSVSYSAAIESASCPDFAQ
MPSDFARRVEREASRRGAAQARQIVVIGDGAAWIWKTAESLFPGALCIVDRFHAKQHLSELSKALFGDTPKAKEWTHCRYEELDEGRMDDLLKEIGIYAS
RFPEAAQCRTYFQNNRERMRYPEFRALGLCTSSGVVEAGCKSIVGGRLKKSGMHWSVAGANAILALRCTIKSGRYESFWERKASQWAA

 

Blast result :
Comments
ISLfe1 is 44% aa similar to ISSiac4.
References