ISLfe1
- Family ISKra4
- Group ISKra4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
GG693873.1 | ND | Leptospirillum ferrodiazotrophum | Leptospirillum ferrodiazotrophum |
DNA section
IS Length : 1800 bp
Ends
IR Length : 23
IRL : GGGTGAGCGACAAATTTTAGGACGCGCCTCCCGTCAAGGATCTTGGGAAC
IRR : GGGTGAGCGACAAATTTTAGGACTTAGATATATCGTCTTAAGTCTTTGTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CAAGGGAGGC | ATCCTCAGG | GGGCGCCCCA | 9 |
DNA sequence
GGGTGAGCGACAAATTTTAGGACGCGCCTCCCGTCAAGGATCTTGGGAACGACATGGCCCGCAGAACATTGACTGACAGACATGTTGATGGCCAGGCAAG
ACGCGCTGGACATTCCTGTATGATTTTGTTATGGATAGAAGGACGTTAGAAAAACTTCCCCCTTCTTCCATAGGAGCGTTCCATGAGCCCTCGAAAAAGA
CCCCCTGCGGACCCGACATCTCCCCCGGCCGATCAGGCCCAGGAAGCCCTTCGCACCATGGAGGCGGCCTTGCGTCAGAAGATTGGAGCGGCCCCGAAGG
GCTCCGACGAAAAGAGACATCTTCAGGAGCTTCTCTCTCTTCTTTCCGGACAAAAGACTCCCGAGGCTCCCCCCACGGCCTCAAAAGCCCCCACCCCCTC
GTTTGCCTCGATCCTCGAGGAGGTGAGCCAGCCGATGATCCGCTCCTCCCGACGATTGGACTTCGGAGCCATGGAGAGGGCCATGAAAGACCGGATGCTC
GAAGAGACGGCCCGAACCCTCGAGTCTCGCCTGAACGAGGAGATTACCCGCCACCCGGCCCCCTTCCGTTGTCCGGCCTGCGGGCGCCTCCTTCAGAGCA
AGGGGATGAAATCCAAGACCTTTATGACGTCGCTCGGAGAGATCACCCTCCGCCGGCGTTACGGGTTTTGTCGCTCCTGCCGGAAGGGGAGCTTCCCCGA
CGATGCCCGCCTGGGACTCGACGAGACAGGCGTCTCTCCCGAGGTTCAGTATCTGGCCGGCCTCTTTGGCGCCGAGACGGACTTTTTGAGAGCGAGCGAC
CTGCTTTTTTGCGCCGCTCGGATCCGGCTTCCGGAAAAGCAGGTCGAGCGGCTCGCCAAGTCCCTTGGGGAGCAGATCGCTCAAGACGAACGGGAGCATG
TCGAGCTCGAGCCTCACCGCCTCCCCCAGGGCCCCCTTTATATCGGGATGGATGGGACGGGTGTACCGATCCAGTCGCGCGAGACAGCCGGGAGACGCGG
CAAGCAGAAAGACGGCTCCTCCAAGACTCGCGAGGCCAAGATGATCGACATCTGGGAGGCCCATACGCAAAACGAGCGGGGAATCCCGATCCGGGACCCC
GGATCGGTCTCCTACTCGGCGGCCATCGAAAGTGCCTCCTGCCCGGACTTCGCGCAGATGCCCTCCGACTTTGCCCGGCGGGTCGAGCGCGAGGCCTCCC
GACGCGGGGCCGCACAGGCCCGTCAGATTGTCGTCATCGGCGATGGTGCCGCCTGGATCTGGAAAACCGCCGAATCCCTCTTTCCCGGAGCTCTCTGCAT
TGTGGACCGCTTCCATGCCAAGCAGCACCTCTCCGAACTCTCGAAGGCCCTCTTCGGCGACACTCCCAAGGCCAAGGAGTGGACCCATTGTCGCTACGAG
GAGCTCGATGAAGGTCGGATGGACGATCTGCTCAAGGAGATCGGAATCTACGCCTCCCGATTCCCGGAAGCCGCCCAATGCCGCACCTATTTTCAGAACA
ACCGGGAGCGAATGCGCTACCCGGAGTTCCGGGCCCTGGGGCTCTGTACCTCAAGCGGGGTCGTCGAGGCCGGCTGCAAGTCGATCGTCGGGGGCCGCCT
CAAAAAATCCGGCATGCACTGGAGCGTCGCCGGAGCCAACGCCATCCTGGCCCTGCGGTGCACGATCAAGAGCGGACGCTACGAGTCGTTCTGGGAGCGC
AAAGCCAGTCAATGGGCCGCCTGAATGGAGACATGCAATATAATGCAAAAAACAAAGACTTAAGACGATATATCTAAGTCCTAAAATTTGTCGCTCACCC
ACGCGCTGGACATTCCTGTATGATTTTGTTATGGATAGAAGGACGTTAGAAAAACTTCCCCCTTCTTCCATAGGAGCGTTCCATGAGCCCTCGAAAAAGA
CCCCCTGCGGACCCGACATCTCCCCCGGCCGATCAGGCCCAGGAAGCCCTTCGCACCATGGAGGCGGCCTTGCGTCAGAAGATTGGAGCGGCCCCGAAGG
GCTCCGACGAAAAGAGACATCTTCAGGAGCTTCTCTCTCTTCTTTCCGGACAAAAGACTCCCGAGGCTCCCCCCACGGCCTCAAAAGCCCCCACCCCCTC
GTTTGCCTCGATCCTCGAGGAGGTGAGCCAGCCGATGATCCGCTCCTCCCGACGATTGGACTTCGGAGCCATGGAGAGGGCCATGAAAGACCGGATGCTC
GAAGAGACGGCCCGAACCCTCGAGTCTCGCCTGAACGAGGAGATTACCCGCCACCCGGCCCCCTTCCGTTGTCCGGCCTGCGGGCGCCTCCTTCAGAGCA
AGGGGATGAAATCCAAGACCTTTATGACGTCGCTCGGAGAGATCACCCTCCGCCGGCGTTACGGGTTTTGTCGCTCCTGCCGGAAGGGGAGCTTCCCCGA
CGATGCCCGCCTGGGACTCGACGAGACAGGCGTCTCTCCCGAGGTTCAGTATCTGGCCGGCCTCTTTGGCGCCGAGACGGACTTTTTGAGAGCGAGCGAC
CTGCTTTTTTGCGCCGCTCGGATCCGGCTTCCGGAAAAGCAGGTCGAGCGGCTCGCCAAGTCCCTTGGGGAGCAGATCGCTCAAGACGAACGGGAGCATG
TCGAGCTCGAGCCTCACCGCCTCCCCCAGGGCCCCCTTTATATCGGGATGGATGGGACGGGTGTACCGATCCAGTCGCGCGAGACAGCCGGGAGACGCGG
CAAGCAGAAAGACGGCTCCTCCAAGACTCGCGAGGCCAAGATGATCGACATCTGGGAGGCCCATACGCAAAACGAGCGGGGAATCCCGATCCGGGACCCC
GGATCGGTCTCCTACTCGGCGGCCATCGAAAGTGCCTCCTGCCCGGACTTCGCGCAGATGCCCTCCGACTTTGCCCGGCGGGTCGAGCGCGAGGCCTCCC
GACGCGGGGCCGCACAGGCCCGTCAGATTGTCGTCATCGGCGATGGTGCCGCCTGGATCTGGAAAACCGCCGAATCCCTCTTTCCCGGAGCTCTCTGCAT
TGTGGACCGCTTCCATGCCAAGCAGCACCTCTCCGAACTCTCGAAGGCCCTCTTCGGCGACACTCCCAAGGCCAAGGAGTGGACCCATTGTCGCTACGAG
GAGCTCGATGAAGGTCGGATGGACGATCTGCTCAAGGAGATCGGAATCTACGCCTCCCGATTCCCGGAAGCCGCCCAATGCCGCACCTATTTTCAGAACA
ACCGGGAGCGAATGCGCTACCCGGAGTTCCGGGCCCTGGGGCTCTGTACCTCAAGCGGGGTCGTCGAGGCCGGCTGCAAGTCGATCGTCGGGGGCCGCCT
CAAAAAATCCGGCATGCACTGGAGCGTCGCCGGAGCCAACGCCATCCTGGCCCTGCGGTGCACGATCAAGAGCGGACGCTACGAGTCGTTCTGGGAGCGC
AAAGCCAGTCAATGGGCCGCCTGAATGGAGACATGCAATATAATGCAAAAAACAAAGACTTAAGACGATATATCTAAGTCCTAAAATTTGTCGCTCACCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1467 bp | 488 aa | 258 | 1724 | + | No |
Chemistry : DDE
ORF sequence :
MEAALRQKIGAAPKGSDEKRHLQELLSLLSGQKTPEAPPTASKAPTPSFASILEEVSQPMIRSSRRLDFGAMERAMKDRMLEETARTLESRLNEEITRHP
APFRCPACGRLLQSKGMKSKTFMTSLGEITLRRRYGFCRSCRKGSFPDDARLGLDETGVSPEVQYLAGLFGAETDFLRASDLLFCAARIRLPEKQVERLA
KSLGEQIAQDEREHVELEPHRLPQGPLYIGMDGTGVPIQSRETAGRRGKQKDGSSKTREAKMIDIWEAHTQNERGIPIRDPGSVSYSAAIESASCPDFAQ
MPSDFARRVEREASRRGAAQARQIVVIGDGAAWIWKTAESLFPGALCIVDRFHAKQHLSELSKALFGDTPKAKEWTHCRYEELDEGRMDDLLKEIGIYAS
RFPEAAQCRTYFQNNRERMRYPEFRALGLCTSSGVVEAGCKSIVGGRLKKSGMHWSVAGANAILALRCTIKSGRYESFWERKASQWAA
APFRCPACGRLLQSKGMKSKTFMTSLGEITLRRRYGFCRSCRKGSFPDDARLGLDETGVSPEVQYLAGLFGAETDFLRASDLLFCAARIRLPEKQVERLA
KSLGEQIAQDEREHVELEPHRLPQGPLYIGMDGTGVPIQSRETAGRRGKQKDGSSKTREAKMIDIWEAHTQNERGIPIRDPGSVSYSAAIESASCPDFAQ
MPSDFARRVEREASRRGAAQARQIVVIGDGAAWIWKTAESLFPGALCIVDRFHAKQHLSELSKALFGDTPKAKEWTHCRYEELDEGRMDDLLKEIGIYAS
RFPEAAQCRTYFQNNRERMRYPEFRALGLCTSSGVVEAGCKSIVGGRLKKSGMHWSVAGANAILALRCTIKSGRYESFWERKASQWAA
Blast result :
Comments
ISLfe1 is 44% aa similar to ISSiac4.
References