ISMae43
- Family ISKra4
- Group ISMich2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010296 | ND | Microcystis aeruginosa | Microcystis aeruginosa NIES-843 |
DNA section
IS Length : 1262 bp
Ends
IR Length : 32/37
IRL : GGGAGCATCTCACTTATGCAATGAGTATTAATACTTATAGCCGTCAACAA
IRR : GGGAGCATCTCACCTTTGCAATAAGTAGAAATGCTTAATGATCTCAATAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCCGTTTCCC | GTTTCCCG | CCAGGAATAA | 8 |
AGCTATGTAC | TCTTTAGC | GGAATGCCAC | 8 |
CATTTAAAAC | TTAAAACA/T | TTAAAACAGT | 8 |
GAATAGCTTG | TAAACTGAAT | 0 | |
TAATTTAACC | ATGCGTTATG | 0 |
DNA sequence
GGGAGCATCTCACTTATGCAATGAGTATTAATACTTATAGCCGTCAACAACTAGAAAATCTTCAACTTGATCACAAAGAGAAATGAGATTATAATAGTTA
TAACTTACAATTCAGAATAGCTCTCGATGGGAGGAATAATTCAATGTTATCAGAAAATGAAAAAAGAATTAAAGAGTTATGTCAAGAGTTAGGGCAATGT
CTCTATGAGCAATCCCCAATTAATAAATTTAATAACTTGGGAGAGATAGAGGAGACAGTCAGAGATTTAATGATTCAGTATGTCAACCCAGAAATCGGTA
TTTTTTTGTCAAAACAAGCACAGGAGAAACAGCTGGTCGGACAAGAAAAGTGAAAAGTATTTTGGGGGAATTACCAATTACAGAAAAACAAGCGAAAAAA
TTAGAAATAAAGTCTCGGACTCAGATGAGTCCAATGTTAGAGAAGAACTGTTTGCTATTAAGTGGCGATGAATCCTACGAGAAATCGGCGCAGAAAATCA
AATCATTGACAGGGATTGCTGTTTCTCACAGTACCCAACAACGCCTCGTACATCGCTATGCTTTTGAAGAATTACCGTCTAACCCAGAAGTGGAAGTGGA
AGAAATGAGCCTAGATGGCGGTAAGGTACGACTAAGAACTGCCAAGGGAAAAGCCTTAATTTGGCGTGATTATAAAGCAGTGAGTTTTCATCAACTGGGG
GTAGCGGCTTTTTTTCAAGATAACTCAGCTTTATTAGATTTGGTTAATTCTCAAGTTTTGGCCAAGCCTTTAATTTGTTTAGGAGATGGACATGATGGTA
TCTGGAATTTATTTCGTGAGATAGGAGAGAAACAGGAAAGAATTGAAATATTGGATTGGTATCATTTAATCGAAAACCTCTATAAAGTTGGCGGGTCATT
CCAGCGAATTGAGGAGGTAAAATGTTTTCTCTGGAAGGGGGAAGTGGAGGCGGCTATCTCTTGTTGTGAAGGATGGTCAGAGCCGCAAGTTGAGAATTTT
ATTACTTATTTAAACAAGCATAAACATCGAATTGTCAATTATGGTTATTTGCAGGCAGAGGGGATTTCCATTGGCTCTGGCTCCGTCGAATCAAAAATTA
AACAAATTGCTCATCGTCTTAAAATTACTGGTGCAAGTTGGGAATCTGGTAATGTACCGCAAGTCCTTCGTCATCGCTGTGCTTATCTAAATGGTTGCCT
TTTTTAACTTTTTTATTGAGATCATTAAGCATTTCTACTTATTGCAAAGGTGAGATGCTCCC
TAACTTACAATTCAGAATAGCTCTCGATGGGAGGAATAATTCAATGTTATCAGAAAATGAAAAAAGAATTAAAGAGTTATGTCAAGAGTTAGGGCAATGT
CTCTATGAGCAATCCCCAATTAATAAATTTAATAACTTGGGAGAGATAGAGGAGACAGTCAGAGATTTAATGATTCAGTATGTCAACCCAGAAATCGGTA
TTTTTTTGTCAAAACAAGCACAGGAGAAACAGCTGGTCGGACAAGAAAAGTGAAAAGTATTTTGGGGGAATTACCAATTACAGAAAAACAAGCGAAAAAA
TTAGAAATAAAGTCTCGGACTCAGATGAGTCCAATGTTAGAGAAGAACTGTTTGCTATTAAGTGGCGATGAATCCTACGAGAAATCGGCGCAGAAAATCA
AATCATTGACAGGGATTGCTGTTTCTCACAGTACCCAACAACGCCTCGTACATCGCTATGCTTTTGAAGAATTACCGTCTAACCCAGAAGTGGAAGTGGA
AGAAATGAGCCTAGATGGCGGTAAGGTACGACTAAGAACTGCCAAGGGAAAAGCCTTAATTTGGCGTGATTATAAAGCAGTGAGTTTTCATCAACTGGGG
GTAGCGGCTTTTTTTCAAGATAACTCAGCTTTATTAGATTTGGTTAATTCTCAAGTTTTGGCCAAGCCTTTAATTTGTTTAGGAGATGGACATGATGGTA
TCTGGAATTTATTTCGTGAGATAGGAGAGAAACAGGAAAGAATTGAAATATTGGATTGGTATCATTTAATCGAAAACCTCTATAAAGTTGGCGGGTCATT
CCAGCGAATTGAGGAGGTAAAATGTTTTCTCTGGAAGGGGGAAGTGGAGGCGGCTATCTCTTGTTGTGAAGGATGGTCAGAGCCGCAAGTTGAGAATTTT
ATTACTTATTTAAACAAGCATAAACATCGAATTGTCAATTATGGTTATTTGCAGGCAGAGGGGATTTCCATTGGCTCTGGCTCCGTCGAATCAAAAATTA
AACAAATTGCTCATCGTCTTAAAATTACTGGTGCAAGTTGGGAATCTGGTAATGTACCGCAAGTCCTTCGTCATCGCTGTGCTTATCTAAATGGTTGCCT
TTTTTAACTTTTTTATTGAGATCATTAAGCATTTCTACTTATTGCAAAGGTGAGATGCTCCC
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
310 bp | 69 aa | 144 | 453 | + | No |
Description : First part of the transposase
ORF sequence :
MLSENEKRIKELCQELGQCLYEQSPINKFNNLGEIEETVRDLMIQYVNPEIGIFLSKQAQEKQLVGQEK
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
972 bp | 323 aa | 236 | 1207 | + | No |
Description : Second part of the transposase
ORF sequence :
LGRDRGDSQRFNDSVCQPRNRYFFVKTSTGETAGRTRKVKSILGELPITEKQAKKLEIKSRTQMSPMLEKNCLLLSGDESYEKSAQKIKSLTGIAVSHST
QQRLVHRYAFEELPSNPEVEVEEMSLDGGKVRLRTAKGKALIWRDYKAVSFHQLGVAAFFQDNSALLDLVNSQVLAKPLICLGDGHDGIWNLFREIGEKQ
ERIEILDWYHLIENLYKVGGSFQRIEEVKCFLWKGEVEAAISCCEGWSEPQVENFITYLNKHKHRIVNYGYLQAEGISIGSGSVESKIKQIAHRLKITGA
SWESGNVPQVLRHRCAYLNGCLF
QQRLVHRYAFEELPSNPEVEVEEMSLDGGKVRLRTAKGKALIWRDYKAVSFHQLGVAAFFQDNSALLDLVNSQVLAKPLICLGDGHDGIWNLFREIGEKQ
ERIEILDWYHLIENLYKVGGSFQRIEEVKCFLWKGEVEAAISCCEGWSEPQVENFITYLNKHKHRIVNYGYLQAEGISIGSGSVESKIKQIAHRLKITGA
SWESGNVPQVLRHRCAYLNGCLF
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1064 bp | 354 aa | 144 | 1207 | + | Yes |
Chemistry : DDE
ORF sequence :
MLSENEKRIKELCQELGQCLYEQSPINKFNNLGEIEETVRDLMIQYVNPEIGIFFVKTSTGETAGRTRKVKSILGELPITEKQAKKLEIKSRTQMSPMLE
KNCLLLSGDESYEKSAQKIKSLTGIAVSHSTQQRLVHRYAFEELPSNPEVEVEEMSLDGGKVRLRTAKGKALIWRDYKAVSFHQLGVAAFFQDNSALLDL
VNSQVLAKPLICLGDGHDGIWNLFREIGEKQERIEILDWYHLIENLYKVGGSFQRIEEVKCFLWKGEVEAAISCCEGWSEPQVENFITYLNKHKHRIVNY
GYLQAEGISIGSGSVESKIKQIAHRLKITGASWESGNVPQVLRHRCAYLNGCLF
KNCLLLSGDESYEKSAQKIKSLTGIAVSHSTQQRLVHRYAFEELPSNPEVEVEEMSLDGGKVRLRTAKGKALIWRDYKAVSFHQLGVAAFFQDNSALLDL
VNSQVLAKPLICLGDGHDGIWNLFREIGEKQERIEILDWYHLIENLYKVGGSFQRIEEVKCFLWKGEVEAAISCCEGWSEPQVENFITYLNKHKHRIVNY
GYLQAEGISIGSGSVESKIKQIAHRLKITGASWESGNVPQVLRHRCAYLNGCLF
Blast result :
Comments
ISMae43 is 66% aa similar to ISMae42.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References