ISSiac4
- Family ISKra4
- Group ISKra4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_019892 | ND | Singulisphaera acidiphila | Singulisphaera acidiphila DSM 18658 |
DNA section
IS Length : 1519 bp
Ends
IR Length : 17/23
IRL : CGGTGAGCGTCTTGACAGTTGGTGGAATCTTTGTACACAAGAGGGAAACC
IRR : CGGTGAGCATCACATTAGTTGGTAGGACGGACGTTCAGTTGCTGGAATAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCACAACCTGT | GCTGGTCTT | TGGTTCGATTG | 9 |
CTGTGAATGCG | CCATAATTC | AGGTGAGTCTC | 9 |
GAGTAAACCAA | TGTTGGCGG | CGGGAATGATG | 9 |
CCGCCAGACGG | CCCTTGTTC | GACCGTTCGAT | 9 |
CGCTCATTCAA | GGCCGCGAG | GGACGGGTTGT | 9 |
TCCTCGCGGCC | CCGGGAATA | CAGCCTTCCGG | 9 |
CAGGATGGACA | GTCCTACGA | CTTCAGCGGAT | 9 |
DNA sequence
CGGTGAGCGTCTTGACAGTTGGTGGAATCTTTGTACACAAGAGGGAAACCGGCGGTACCTGAGGAAAACCCGACCTCGGAAACGGAGTCCATCCATGCCG
ACCGCACCCGTGCCTCCCGAGAAACAGGCTGAAATCGCGGGGCTCGAGCAAGCCATCCGCGAGGCCGGCGATGCCGAAATCAGCGAACTCGCGGCCAATC
TTGCCATCACCGACGACGCCCACCTCTTCGGCGCCAACGAATTCAAGATCCGGGCCCTGGCTCACAAGATCGCCGCCAAGGCGATCGAGCAGCACCTGAC
GCGAAAAAAAACGGATACGACGGAGCCAGCGTAACCTGTCCCCACTGTAGCCGGACGGCGGAGTTTCATTCGCACCGCCTGCACACCTCCTTCACCCTTG
TGGGAGCCGTCCGCTACCGCCGGGCTTACTACCTCTGTCGATGCTGTGGCAAGGGGCTGTTCCCCTTCGATCGCGAAGCGGGGCTGACGACCCGCGACTT
GACGCCGGCTTTGGAACGCGTCGCGAGCTTGGCCGGGGCGGTTGCCGACAGCTTCGAGAAGGGGGCGGAACTGCTCGAAGAGATGGGGGGTGTCCGGGTC
TCGGAATCGACTGTCGAACGGACCACCGAAGAGGCCGGTCAACGTCTGGCTGAGGCGGTCCAGGCCGGCTCGCACTTGGGTCCCCCGGCCGACTGGCCCT
GGCACAAGGATTACGAAGGCCAACGTTGTGCGTACGTCGAACTCGACGCCACTGGGGTGCGGCGTCAAGGGGAGGGAGGGGGACCCGCCGAAGGCCGCAT
GGCCTACGTGGGGATGGTCTGTAACCCCACCCCGGAGTGGCCTTGGCCCGACGAGAAACCGCAGCCGATGCAGGCGCGTTACCTCGCGGGCCTGTATCCC
TTGGAGGAGTTCGGTCCCTTGCTCCGCACGCCCGCCGGAGACGTCGGTATGGACCGGGCCGATCGCTGGATCGGCCTCTCCGACGGCGGTGCGGGCCTGG
AGGATCGACTCCGTGAAAACTTTCCGCGTGTGGAAGTGATCATTCTTGACTTTTTTCACCCTGCGGAGAAGCTCACCGGCTTGGCGCGTCTGCTGCACCC
TCAGGACGAGGACCAAGCCGAAGACCAAGCCCGGCGATGGCGACAGTTGCTCAAAGAGGAAGGGGGCGCGGTGTTGGGATCTGTCCTGCGGGAATGGGAC
TGGCCGCGCCGGCCTGGCCTGGGCGAAGCCGCGACCGAGTTAATCGGTTACCTTGAACGCCAGGCGCACCGGATGGACTATCCCGAATACCTGGCGCGTG
GCTGGTGTATCGGGAGCGGGGCGATCGAGAGCGCGTGCAAGACGGTGGTGGGGCAGCGTCTGAAACTGGCCGGAATGCGTTGGGGCGAAGACGGCGCTCA
CGCCCTCTGCCACCTCCGCGCCCTCTACCGCAGCGAAAAAGGCCAGTGGGACGCCTTCTGGAATCGCGACTATTCCAGCAACTGAACGTCCGTCCTACCA
ACTAATGTGATGCTCACCG
ACCGCACCCGTGCCTCCCGAGAAACAGGCTGAAATCGCGGGGCTCGAGCAAGCCATCCGCGAGGCCGGCGATGCCGAAATCAGCGAACTCGCGGCCAATC
TTGCCATCACCGACGACGCCCACCTCTTCGGCGCCAACGAATTCAAGATCCGGGCCCTGGCTCACAAGATCGCCGCCAAGGCGATCGAGCAGCACCTGAC
GCGAAAAAAAACGGATACGACGGAGCCAGCGTAACCTGTCCCCACTGTAGCCGGACGGCGGAGTTTCATTCGCACCGCCTGCACACCTCCTTCACCCTTG
TGGGAGCCGTCCGCTACCGCCGGGCTTACTACCTCTGTCGATGCTGTGGCAAGGGGCTGTTCCCCTTCGATCGCGAAGCGGGGCTGACGACCCGCGACTT
GACGCCGGCTTTGGAACGCGTCGCGAGCTTGGCCGGGGCGGTTGCCGACAGCTTCGAGAAGGGGGCGGAACTGCTCGAAGAGATGGGGGGTGTCCGGGTC
TCGGAATCGACTGTCGAACGGACCACCGAAGAGGCCGGTCAACGTCTGGCTGAGGCGGTCCAGGCCGGCTCGCACTTGGGTCCCCCGGCCGACTGGCCCT
GGCACAAGGATTACGAAGGCCAACGTTGTGCGTACGTCGAACTCGACGCCACTGGGGTGCGGCGTCAAGGGGAGGGAGGGGGACCCGCCGAAGGCCGCAT
GGCCTACGTGGGGATGGTCTGTAACCCCACCCCGGAGTGGCCTTGGCCCGACGAGAAACCGCAGCCGATGCAGGCGCGTTACCTCGCGGGCCTGTATCCC
TTGGAGGAGTTCGGTCCCTTGCTCCGCACGCCCGCCGGAGACGTCGGTATGGACCGGGCCGATCGCTGGATCGGCCTCTCCGACGGCGGTGCGGGCCTGG
AGGATCGACTCCGTGAAAACTTTCCGCGTGTGGAAGTGATCATTCTTGACTTTTTTCACCCTGCGGAGAAGCTCACCGGCTTGGCGCGTCTGCTGCACCC
TCAGGACGAGGACCAAGCCGAAGACCAAGCCCGGCGATGGCGACAGTTGCTCAAAGAGGAAGGGGGCGCGGTGTTGGGATCTGTCCTGCGGGAATGGGAC
TGGCCGCGCCGGCCTGGCCTGGGCGAAGCCGCGACCGAGTTAATCGGTTACCTTGAACGCCAGGCGCACCGGATGGACTATCCCGAATACCTGGCGCGTG
GCTGGTGTATCGGGAGCGGGGCGATCGAGAGCGCGTGCAAGACGGTGGTGGGGCAGCGTCTGAAACTGGCCGGAATGCGTTGGGGCGAAGACGGCGCTCA
CGCCCTCTGCCACCTCCGCGCCCTCTACCGCAGCGAAAAAGGCCAGTGGGACGCCTTCTGGAATCGCGACTATTCCAGCAACTGAACGTCCGTCCTACCA
ACTAATGTGATGCTCACCG
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
240 bp | 79 aa | 95 | 334 | + | No |
Description : First part of the transposase
ORF sequence :
MPTAPVPPEKQAEIAGLEQAIREAVDAEISELAANLAITDDAHLFGANEFKIRALAHKIAAKAIEQHLTRKKTDTTEPA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1353 bp | 450 aa | 133 | 1485 | + | No |
Description : Second part of the transposase
ORF sequence :
NRGARASHPRGRRCRNQRTRGQSCHHRRRPPLRRQRIQDPGPGSQDRRQGDRAAPDAKKNGYDGASVTCPHCSRTAEFHSHRLHTSFTLVGAVRYRRAYY
LCRCCGKGLFPFDREAGLTTRDLTPALERVASLAGAVADSFEKGAELLEEMGGVRVSESTVERTTEEAGQRLAEAVQAGSHLGPPADWPWHKDYEGQRCA
YVELDATGVRRQGEGGGPAEGRMAYVGMVCNPTPEWPWPDEKPQPMQARYLAGLYPLEEFGPLLRTPAGDVGMDRADRWIGLSDGGAGLEDRLRENFPRV
EVIILDFFHPAEKLTGLARLLHPQDEDQAEDQARRWRQLLKEEGGAVLGSVLREWDWPRRPGLGEAATELIGYLERQAHRMDYPEYLARGWCIGSGAIES
ACKTVVGQRLKLAGMRWGEDGAHALCHLRALYRSEKGQWDAFWNRDYSSN
LCRCCGKGLFPFDREAGLTTRDLTPALERVASLAGAVADSFEKGAELLEEMGGVRVSESTVERTTEEAGQRLAEAVQAGSHLGPPADWPWHKDYEGQRCA
YVELDATGVRRQGEGGGPAEGRMAYVGMVCNPTPEWPWPDEKPQPMQARYLAGLYPLEEFGPLLRTPAGDVGMDRADRWIGLSDGGAGLEDRLRENFPRV
EVIILDFFHPAEKLTGLARLLHPQDEDQAEDQARRWRQLLKEEGGAVLGSVLREWDWPRRPGLGEAATELIGYLERQAHRMDYPEYLARGWCIGSGAIES
ACKTVVGQRLKLAGMRWGEDGAHALCHLRALYRSEKGQWDAFWNRDYSSN
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1391 bp | 463 aa | 95 | 1485 | + | Yes |
Chemistry : DDE
ORF sequence :
MPTAPVPPEKQAEIAGLEQAIREAVDAEISELAANLAITDDAHLFGANEFKIRALAHKIAAKAIEQHLTRKKNGYDGASVTCPHCSRTAEFHSHRLHTSF
TLVGAVRYRRAYYLCRCCGKGLFPFDREAGLTTRDLTPALERVASLAGAVADSFEKGAELLEEMGGVRVSESTVERTTEEAGQRLAEAVQAGSHLGPPAD
WPWHKDYEGQRCAYVELDATGVRRQGEGGGPAEGRMAYVGMVCNPTPEWPWPDEKPQPMQARYLAGLYPLEEFGPLLRTPAGDVGMDRADRWIGLSDGGA
GLEDRLRENFPRVEVIILDFFHPAEKLTGLARLLHPQDEDQAEDQARRWRQLLKEEGGAVLGSVLREWDWPRRPGLGEAATELIGYLERQAHRMDYPEYL
ARGWCIGSGAIESACKTVVGQRLKLAGMRWGEDGAHALCHLRALYRSEKGQWDAFWNRDYSSN
TLVGAVRYRRAYYLCRCCGKGLFPFDREAGLTTRDLTPALERVASLAGAVADSFEKGAELLEEMGGVRVSESTVERTTEEAGQRLAEAVQAGSHLGPPAD
WPWHKDYEGQRCAYVELDATGVRRQGEGGGPAEGRMAYVGMVCNPTPEWPWPDEKPQPMQARYLAGLYPLEEFGPLLRTPAGDVGMDRADRWIGLSDGGA
GLEDRLRENFPRVEVIILDFFHPAEKLTGLARLLHPQDEDQAEDQARRWRQLLKEEGGAVLGSVLREWDWPRRPGLGEAATELIGYLERQAHRMDYPEYL
ARGWCIGSGAIESACKTVVGQRLKLAGMRWGEDGAHALCHLRALYRSEKGQWDAFWNRDYSSN
Blast result :
Comments
ISSiac4 is 43% aa similar to ISLfe1.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
The third ORF is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References