ISSysp6
- Family ISKra4
- Group ISAzba1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_DS989906.1 | ND | Synechococcus sp. | Synechococcus sp. PCC_7335 |
DNA section
IS Length : 2172 bp
Ends
IR Length : 37/39
IRL : GGAAAGCACCAAAAACCTCGGGAAAGCCCGGAAACTCGTTCGAGCCCTGC
IRR : GGAGAGCACCAAAAACCTTGGGAAAGCCCGGAAACTCGTGGCTCAGCCGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGCAGCACTT | CATCCGCCTC | 0 |
DNA sequence
GGAAAGCACCAAAAACCTCGGGAAAGCCCGGAAACTCGTTCGAGCCCTGCATGAGAGTGTGCCTTCCAGAGCCTGAGAGTGGCGATCACAACCCGTAATC
ATCAGCCGTAATCAGCATGGTCTCCTGAAAACTCGTTAATCAGCACAAACGAGTTTTCAACGTTTCCCACACTTTTCGGTAGTCTCATAGTACACTCTCA
GATTTGCACTATATCCTTCAGCTGGTGATGGGCTGGAGCGACTATCATCTCAACTGCTTTACGATTCACGGCAAGCGCTACGGCGTAGATAATGCAAGCT
GTCTTTTCCTCAGCGAGGATACCGACGAAGTGCAGATTGCTGATCTGGGCTTGAGAGAACGAGAAAAGTTTCGCTACGAATATGACTTTACGGATCGCTG
GCATCATCAACTGCGTGTCGAAGCCATTCTTCATCCTGACGAGCCGCTGCTTACGCCTGTCTGTGTTGCAGGTGCACGTTCAGCACCGCCAGAAGACTGT
GGTGGCGTGATGGCCTATTTCGCTAAACGACAGCACTATTCCTACTGGCGTGGCATTGAGGTGCTCGCTGATATCCAGGAGCGTGGCAGAGAAGCTGTCT
CAGAACATGACGAAGAGATTCGGCGGCTGATGCGATGGCTGAGTCTGGACAAATTTGACCGTGATGGGGTGAATTGTCGTCTGAAGCAGTATGCCGAAGG
GGATCGCGAATGGTTGTTTGCTGAGGTTATAAGGTAATGCCAATCAAAGTTCAGATTGTGTTTGAAGACGAGACTGGCGGGCCTACGGTGGTGCAGGAAG
TCGCTCAAATAGAGCGTGATCAGTTCTCTCCGGCCACACTGGGGCTGACGCTAGGAGAGGCAAAGACGGTTCTGCATGGGCTGCAACGTCATCTGGTGAC
AAAGCAGGTTGAGGACTATCAACAACAGCAGCTGGCCTGCCCTGATTGCCAACAGCCGCGCCGACTCAAGGATCGCCGCAAGCTAACCTACCGCAGCTTG
TTTGGAAAGCTGAAACTTCCCTGCGATCGCTTTTTTCACTGCGACTGTCAGTCGCATGAAAAGAAAAGCGTCAGCCCGCTGTCAGACTTGCTGGCTGAAC
GCACGGCTCCTGAATTGTTGTATCTGGAGACAAAGTTCGCTGCACTGATGTCTTTTGAACAAAGCGCCAAGCTCTTAGCCGAACTCCTACCGCTTGATGA
ACAGTTGAATGCAGAAACGATCCGAAACCATACTCAACAGATGGCGCAGCGAGTAGATGCTGAGTTAGGGGAGGAGCGATTTATGTACATTGATTGCTGT
GAACGGGACATTGCTGCACTGCCACGGCCTGATATGCCGCTGACGATGGGTATCGATGGAGGCTATGTCAGAGCGACCCAGTCGCAGTCTGATCCGAAAC
AGCCACATCATTTTGAAATCATTACGGGCAAAAGTATTGCCGATGATGGCTCATCCAAGTGCTTTGGCTTGGTCAATAGCTACGACACAAAGCCCAAACG
CCGGGTATTTGAAGTGCTTCAGTCCCAAGGGATGCAGATGAATCAGCAGGTCACCTTTTTCTCGGATGGCGGCGATACGGTACGGGAGCTTCAGCTCTAT
CTCAATCCACAAGCTGAGCATCTGCTCGATTGGTTCCATATCACCATGCGTATTACCGTCATGACTCAGATGGCGAAGGGGATCTCTATCCCGGAAGACT
GGTTGATTAAGGATGTGGACAAGACGCTTGAGAGCCTCAAGTGGTATCTCTGGCACGGCAATGTCTATCAGGCACTGCAAGAGATTGACTGGTTAGCTGA
TTTACTTGATGCTGATGACCTGACACCTAAGCAACGCCGATTTTTACAGAAGGTCGAGGAGTTCAAAACCTACATTTCCAACAATCAAGCGTTCATCACC
AACTACGGTGAGCGCTATCGCAATGGCGAAAGGATTTCGTCTGGCTTTGTTGAGTCTACGGTCAATCAGGTGATCAGCAAGCGTATGGTCAAAAAGCAGC
AGATGCGGTGGACGAAGAAAGGTGCACACCTGCTCTTACAGGTCAGAACGAAAGTGCTCGACGGCGACTGGCGTAAAACCTTTGAGCAGTGGTACCCAGA
ACTAGCTGCTCAAGCGGCTTGAACGGCTGAGCCACGAGTTTCCGGGCTTTCCCAAGGTTTTTGGTGCTCTCC
ATCAGCCGTAATCAGCATGGTCTCCTGAAAACTCGTTAATCAGCACAAACGAGTTTTCAACGTTTCCCACACTTTTCGGTAGTCTCATAGTACACTCTCA
GATTTGCACTATATCCTTCAGCTGGTGATGGGCTGGAGCGACTATCATCTCAACTGCTTTACGATTCACGGCAAGCGCTACGGCGTAGATAATGCAAGCT
GTCTTTTCCTCAGCGAGGATACCGACGAAGTGCAGATTGCTGATCTGGGCTTGAGAGAACGAGAAAAGTTTCGCTACGAATATGACTTTACGGATCGCTG
GCATCATCAACTGCGTGTCGAAGCCATTCTTCATCCTGACGAGCCGCTGCTTACGCCTGTCTGTGTTGCAGGTGCACGTTCAGCACCGCCAGAAGACTGT
GGTGGCGTGATGGCCTATTTCGCTAAACGACAGCACTATTCCTACTGGCGTGGCATTGAGGTGCTCGCTGATATCCAGGAGCGTGGCAGAGAAGCTGTCT
CAGAACATGACGAAGAGATTCGGCGGCTGATGCGATGGCTGAGTCTGGACAAATTTGACCGTGATGGGGTGAATTGTCGTCTGAAGCAGTATGCCGAAGG
GGATCGCGAATGGTTGTTTGCTGAGGTTATAAGGTAATGCCAATCAAAGTTCAGATTGTGTTTGAAGACGAGACTGGCGGGCCTACGGTGGTGCAGGAAG
TCGCTCAAATAGAGCGTGATCAGTTCTCTCCGGCCACACTGGGGCTGACGCTAGGAGAGGCAAAGACGGTTCTGCATGGGCTGCAACGTCATCTGGTGAC
AAAGCAGGTTGAGGACTATCAACAACAGCAGCTGGCCTGCCCTGATTGCCAACAGCCGCGCCGACTCAAGGATCGCCGCAAGCTAACCTACCGCAGCTTG
TTTGGAAAGCTGAAACTTCCCTGCGATCGCTTTTTTCACTGCGACTGTCAGTCGCATGAAAAGAAAAGCGTCAGCCCGCTGTCAGACTTGCTGGCTGAAC
GCACGGCTCCTGAATTGTTGTATCTGGAGACAAAGTTCGCTGCACTGATGTCTTTTGAACAAAGCGCCAAGCTCTTAGCCGAACTCCTACCGCTTGATGA
ACAGTTGAATGCAGAAACGATCCGAAACCATACTCAACAGATGGCGCAGCGAGTAGATGCTGAGTTAGGGGAGGAGCGATTTATGTACATTGATTGCTGT
GAACGGGACATTGCTGCACTGCCACGGCCTGATATGCCGCTGACGATGGGTATCGATGGAGGCTATGTCAGAGCGACCCAGTCGCAGTCTGATCCGAAAC
AGCCACATCATTTTGAAATCATTACGGGCAAAAGTATTGCCGATGATGGCTCATCCAAGTGCTTTGGCTTGGTCAATAGCTACGACACAAAGCCCAAACG
CCGGGTATTTGAAGTGCTTCAGTCCCAAGGGATGCAGATGAATCAGCAGGTCACCTTTTTCTCGGATGGCGGCGATACGGTACGGGAGCTTCAGCTCTAT
CTCAATCCACAAGCTGAGCATCTGCTCGATTGGTTCCATATCACCATGCGTATTACCGTCATGACTCAGATGGCGAAGGGGATCTCTATCCCGGAAGACT
GGTTGATTAAGGATGTGGACAAGACGCTTGAGAGCCTCAAGTGGTATCTCTGGCACGGCAATGTCTATCAGGCACTGCAAGAGATTGACTGGTTAGCTGA
TTTACTTGATGCTGATGACCTGACACCTAAGCAACGCCGATTTTTACAGAAGGTCGAGGAGTTCAAAACCTACATTTCCAACAATCAAGCGTTCATCACC
AACTACGGTGAGCGCTATCGCAATGGCGAAAGGATTTCGTCTGGCTTTGTTGAGTCTACGGTCAATCAGGTGATCAGCAAGCGTATGGTCAAAAAGCAGC
AGATGCGGTGGACGAAGAAAGGTGCACACCTGCTCTTACAGGTCAGAACGAAAGTGCTCGACGGCGACTGGCGTAAAACCTTTGAGCAGTGGTACCCAGA
ACTAGCTGCTCAAGCGGCTTGAACGGCTGAGCCACGAGTTTCCGGGCTTTCCCAAGGTTTTTGGTGCTCTCC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
510 bp | 169 aa | 228 | 737 | + | No |
Annotation : plasmid pRIA4b ORF-3 family proteinDescription :
ORF sequence :
MGWSDYHLNCFTIHGKRYGVDNASCLFLSEDTDEVQIADLGLREREKFRYEYDFTDRWHHQLRVEAILHPDEPLLTPVCVAGARSAPPEDCGGVMAYFAK
RQHYSYWRGIEVLADIQERGREAVSEHDEEIRRLMRWLSLDKFDRDGVNCRLKQYAEGDREWLFAEVIR
RQHYSYWRGIEVLADIQERGREAVSEHDEEIRRLMRWLSLDKFDRDGVNCRLKQYAEGDREWLFAEVIR
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1386 bp | 461 aa | 737 | 2122 | + | No |
Chemistry : DDE
ORF sequence :
MPIKVQIVFEDETGGPTVVQEVAQIERDQFSPATLGLTLGEAKTVLHGLQRHLVTKQVEDYQQQQLACPDCQQPRRLKDRRKLTYRSLFGKLKLPCDRFF
HCDCQSHEKKSVSPLSDLLAERTAPELLYLETKFAALMSFEQSAKLLAELLPLDEQLNAETIRNHTQQMAQRVDAELGEERFMYIDCCERDIAALPRPDM
PLTMGIDGGYVRATQSQSDPKQPHHFEIITGKSIADDGSSKCFGLVNSYDTKPKRRVFEVLQSQGMQMNQQVTFFSDGGDTVRELQLYLNPQAEHLLDWF
HITMRITVMTQMAKGISIPEDWLIKDVDKTLESLKWYLWHGNVYQALQEIDWLADLLDADDLTPKQRRFLQKVEEFKTYISNNQAFITNYGERYRNGERI
SSGFVESTVNQVISKRMVKKQQMRWTKKGAHLLLQVRTKVLDGDWRKTFEQWYPELAAQAA
HCDCQSHEKKSVSPLSDLLAERTAPELLYLETKFAALMSFEQSAKLLAELLPLDEQLNAETIRNHTQQMAQRVDAELGEERFMYIDCCERDIAALPRPDM
PLTMGIDGGYVRATQSQSDPKQPHHFEIITGKSIADDGSSKCFGLVNSYDTKPKRRVFEVLQSQGMQMNQQVTFFSDGGDTVRELQLYLNPQAEHLLDWF
HITMRITVMTQMAKGISIPEDWLIKDVDKTLESLKWYLWHGNVYQALQEIDWLADLLDADDLTPKQRRFLQKVEEFKTYISNNQAFITNYGERYRNGERI
SSGFVESTVNQVISKRMVKKQQMRWTKKGAHLLLQVRTKVLDGDWRKTFEQWYPELAAQAA
Blast result :
Comments
The first ORF is a passenger gene annotated as Plasmid pRiA4b ORF-3-like protein.
ISSysp6 is 40% aa (ORFA) and 63% aa (ORFB : the transposase) similar to ISAzs26.
ISSysp6 is 40% aa (ORFA) and 63% aa (ORFB : the transposase) similar to ISAzs26.
References