ISSysp6

  • Family ISKra4
  • Group ISAzba1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_DS989906.1 ND Synechococcus sp.
Synechococcus sp. PCC_7335
DNA section
IS Length : 2172 bp

Ends


IR Length : 37/39

IRL : GGAAAGCACCAAAAACCTCGGGAAAGCCCGGAAACTCGTTCGAGCCCTGC
IRR : GGAGAGCACCAAAAACCTTGGGAAAGCCCGGAAACTCGTGGCTCAGCCGT

Insertion site


Left flankDirect repeatRight flankDR Length
GGCAGCACTTCATCCGCCTC0

DNA sequence

GGAAAGCACCAAAAACCTCGGGAAAGCCCGGAAACTCGTTCGAGCCCTGCATGAGAGTGTGCCTTCCAGAGCCTGAGAGTGGCGATCACAACCCGTAATC
ATCAGCCGTAATCAGCATGGTCTCCTGAAAACTCGTTAATCAGCACAAACGAGTTTTCAACGTTTCCCACACTTTTCGGTAGTCTCATAGTACACTCTCA
GATTTGCACTATATCCTTCAGCTGGTGATGGGCTGGAGCGACTATCATCTCAACTGCTTTACGATTCACGGCAAGCGCTACGGCGTAGATAATGCAAGCT
GTCTTTTCCTCAGCGAGGATACCGACGAAGTGCAGATTGCTGATCTGGGCTTGAGAGAACGAGAAAAGTTTCGCTACGAATATGACTTTACGGATCGCTG
GCATCATCAACTGCGTGTCGAAGCCATTCTTCATCCTGACGAGCCGCTGCTTACGCCTGTCTGTGTTGCAGGTGCACGTTCAGCACCGCCAGAAGACTGT
GGTGGCGTGATGGCCTATTTCGCTAAACGACAGCACTATTCCTACTGGCGTGGCATTGAGGTGCTCGCTGATATCCAGGAGCGTGGCAGAGAAGCTGTCT
CAGAACATGACGAAGAGATTCGGCGGCTGATGCGATGGCTGAGTCTGGACAAATTTGACCGTGATGGGGTGAATTGTCGTCTGAAGCAGTATGCCGAAGG
GGATCGCGAATGGTTGTTTGCTGAGGTTATAAGGTAATGCCAATCAAAGTTCAGATTGTGTTTGAAGACGAGACTGGCGGGCCTACGGTGGTGCAGGAAG
TCGCTCAAATAGAGCGTGATCAGTTCTCTCCGGCCACACTGGGGCTGACGCTAGGAGAGGCAAAGACGGTTCTGCATGGGCTGCAACGTCATCTGGTGAC
AAAGCAGGTTGAGGACTATCAACAACAGCAGCTGGCCTGCCCTGATTGCCAACAGCCGCGCCGACTCAAGGATCGCCGCAAGCTAACCTACCGCAGCTTG
TTTGGAAAGCTGAAACTTCCCTGCGATCGCTTTTTTCACTGCGACTGTCAGTCGCATGAAAAGAAAAGCGTCAGCCCGCTGTCAGACTTGCTGGCTGAAC
GCACGGCTCCTGAATTGTTGTATCTGGAGACAAAGTTCGCTGCACTGATGTCTTTTGAACAAAGCGCCAAGCTCTTAGCCGAACTCCTACCGCTTGATGA
ACAGTTGAATGCAGAAACGATCCGAAACCATACTCAACAGATGGCGCAGCGAGTAGATGCTGAGTTAGGGGAGGAGCGATTTATGTACATTGATTGCTGT
GAACGGGACATTGCTGCACTGCCACGGCCTGATATGCCGCTGACGATGGGTATCGATGGAGGCTATGTCAGAGCGACCCAGTCGCAGTCTGATCCGAAAC
AGCCACATCATTTTGAAATCATTACGGGCAAAAGTATTGCCGATGATGGCTCATCCAAGTGCTTTGGCTTGGTCAATAGCTACGACACAAAGCCCAAACG
CCGGGTATTTGAAGTGCTTCAGTCCCAAGGGATGCAGATGAATCAGCAGGTCACCTTTTTCTCGGATGGCGGCGATACGGTACGGGAGCTTCAGCTCTAT
CTCAATCCACAAGCTGAGCATCTGCTCGATTGGTTCCATATCACCATGCGTATTACCGTCATGACTCAGATGGCGAAGGGGATCTCTATCCCGGAAGACT
GGTTGATTAAGGATGTGGACAAGACGCTTGAGAGCCTCAAGTGGTATCTCTGGCACGGCAATGTCTATCAGGCACTGCAAGAGATTGACTGGTTAGCTGA
TTTACTTGATGCTGATGACCTGACACCTAAGCAACGCCGATTTTTACAGAAGGTCGAGGAGTTCAAAACCTACATTTCCAACAATCAAGCGTTCATCACC
AACTACGGTGAGCGCTATCGCAATGGCGAAAGGATTTCGTCTGGCTTTGTTGAGTCTACGGTCAATCAGGTGATCAGCAAGCGTATGGTCAAAAAGCAGC
AGATGCGGTGGACGAAGAAAGGTGCACACCTGCTCTTACAGGTCAGAACGAAAGTGCTCGACGGCGACTGGCGTAAAACCTTTGAGCAGTGGTACCCAGA
ACTAGCTGCTCAAGCGGCTTGAACGGCTGAGCCACGAGTTTCCGGGCTTTCCCAAGGTTTTTGGTGCTCTCC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
510 bp169 aa228737+No
ORF function : Passenger Gene
Annotation : plasmid pRIA4b ORF-3 family proteinDescription :

ORF sequence :

MGWSDYHLNCFTIHGKRYGVDNASCLFLSEDTDEVQIADLGLREREKFRYEYDFTDRWHHQLRVEAILHPDEPLLTPVCVAGARSAPPEDCGGVMAYFAK
RQHYSYWRGIEVLADIQERGREAVSEHDEEIRRLMRWLSLDKFDRDGVNCRLKQYAEGDREWLFAEVIR

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1386 bp461 aa7372122+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPIKVQIVFEDETGGPTVVQEVAQIERDQFSPATLGLTLGEAKTVLHGLQRHLVTKQVEDYQQQQLACPDCQQPRRLKDRRKLTYRSLFGKLKLPCDRFF
HCDCQSHEKKSVSPLSDLLAERTAPELLYLETKFAALMSFEQSAKLLAELLPLDEQLNAETIRNHTQQMAQRVDAELGEERFMYIDCCERDIAALPRPDM
PLTMGIDGGYVRATQSQSDPKQPHHFEIITGKSIADDGSSKCFGLVNSYDTKPKRRVFEVLQSQGMQMNQQVTFFSDGGDTVRELQLYLNPQAEHLLDWF
HITMRITVMTQMAKGISIPEDWLIKDVDKTLESLKWYLWHGNVYQALQEIDWLADLLDADDLTPKQRRFLQKVEEFKTYISNNQAFITNYGERYRNGERI
SSGFVESTVNQVISKRMVKKQQMRWTKKGAHLLLQVRTKVLDGDWRKTFEQWYPELAAQAA

 

Blast result :
Comments
The first ORF is a passenger gene annotated as Plasmid pRiA4b ORF-3-like protein.
ISSysp6 is 40% aa (ORFA) and 63% aa (ORFB : the transposase) similar to ISAzs26.
References