ISRli1
- Family ISKra4
- Group ISAzba1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ABIG01000013 | ND | Roseobacter litoralis | Roseobacter litoralis Och 149 |
DNA section
IS Length : 1454 bp
Ends
IR Length : 20/23
IRL : GGGAGTGGAAAGAGACTGGGGATACTTTTCGTTTTCCGTGTAGTCTTCTT
IRR : GGGAGTGGAAAGAATGTGGGGATTAAGCCGCTCTGAGCTGGCCCTGTCGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GATGGCACTG | AAAGGGTGCT | 0 |
DNA sequence
GGGAGTGGAAAGAGACTGGGGATACTTTTCGTTTTCCGTGTAGTCTTCTTCTTTATTTGCAGGAGGCTTAGCGATGAAATTCAGGATCAAGTTGGAGACG
GAATTTGGTTGGGGCGAGACGCGATCACATGAGATTTGTACGCTGGAACGCCGAACGTTAGATGCGTCGAGCGAAGACCTTGGGCTGTGTCTGGCCGAGG
CAAAATCGCTGCTGAAGGAAGTTCAGTGTACGCTACTGCAGGATCAGGTCGAAGAGATCAGCGAAATCGAGCGCGTCTGTCGTTTCTGCGGAACATATCT
ACTGGTTCATGATCGCCGCCGACGTCGCATCGACACGCTCTTCGGTCGGGTGACCGTCGAGGTACCGCGGGTTCGGATGTGCATGTGTGGGCTGCCGGGA
TTTCCTACGCTGAAAGTCGCGCGGTCTCCTCTGACCCGTCTCTTGCCGGACCATGCCGCGCCAGAGCTTCGGCGATTGCAGGCGGAACTGGGTGCGCGCC
ATAGTTTTCGGGAAGCGGCAAAGCTTCTAAATGAATTGACGCCTTGCGCCAGGCAGAACCATGTTACGATCCGCAATCGGCTCGCGACCACAGCTGACAA
CCTTACGTCCAACGAACGCTCTGCGACAGAAAAAGCCGATCATCGCTCAAAGCCATCCGATCTCTCGGTATTTCTGGATAGCGCTTACGTTCGGTCAAGA
CCAGAATATCAGCGTCGGAACTTTGAGATTGTCGTTGGCTCCATCGAGAGCAAAGGTGGCGAGAAACGCCGATTTGGTTTGAGTGTGATCGGCGTGAGCA
ATCCGGGAGAGTGTCTGCGAAGGAATCTGGAAAGCGCCGGATGGCGTGTTGGCACTACTTTAACAGTTTTGTCCGATGGTGACCCTGCACTACGACGACT
GGTGCGCGACGCCACCGGTGCGGAGGTCAATCACATCCTTGACTGGTGGCATATTTCAATGCGCATCCGCCATGTGGAAACGACATTTCAAACCCTGTTT
TCTCTGCTCGGAGGTGCTGACGGTCTGACGGTAGAGAAGCTGGTACAAAACTTGCGTTGGCGCATTTGGCATGGCCAAACGGCTCGTGCGCTGGAAGCGA
TTGAAACGCTTTTCGGATTTGGCATGCGCGTCCGAGGCCAGACGGTTGGCAGAACGAATGACGCAGCGCTTTCGGCAGTTGCGCGCACAATGGAACTGAG
AACCTACTTGGAATACAATCGCGCGGCGCTTGTCGATTATGATCAAAGACGCCGTTGCGGGAAAGCGGTTTCGACATCGCGGGCTGAAGGATTGGTCAAC
GACATCGCCAACGCTCGCATGGGCAAAAAGCGCCGGATGCGCTGGTCCCCAAGTGGCGCACATCGAGTGGCAACGGTTAGGGCCGCAGTCCTAGATGGAA
GGCTTCGACAGGGCCAGCTCAGAGCGGCTTAATCCCCACATTCTTTCCACTCCC
GAATTTGGTTGGGGCGAGACGCGATCACATGAGATTTGTACGCTGGAACGCCGAACGTTAGATGCGTCGAGCGAAGACCTTGGGCTGTGTCTGGCCGAGG
CAAAATCGCTGCTGAAGGAAGTTCAGTGTACGCTACTGCAGGATCAGGTCGAAGAGATCAGCGAAATCGAGCGCGTCTGTCGTTTCTGCGGAACATATCT
ACTGGTTCATGATCGCCGCCGACGTCGCATCGACACGCTCTTCGGTCGGGTGACCGTCGAGGTACCGCGGGTTCGGATGTGCATGTGTGGGCTGCCGGGA
TTTCCTACGCTGAAAGTCGCGCGGTCTCCTCTGACCCGTCTCTTGCCGGACCATGCCGCGCCAGAGCTTCGGCGATTGCAGGCGGAACTGGGTGCGCGCC
ATAGTTTTCGGGAAGCGGCAAAGCTTCTAAATGAATTGACGCCTTGCGCCAGGCAGAACCATGTTACGATCCGCAATCGGCTCGCGACCACAGCTGACAA
CCTTACGTCCAACGAACGCTCTGCGACAGAAAAAGCCGATCATCGCTCAAAGCCATCCGATCTCTCGGTATTTCTGGATAGCGCTTACGTTCGGTCAAGA
CCAGAATATCAGCGTCGGAACTTTGAGATTGTCGTTGGCTCCATCGAGAGCAAAGGTGGCGAGAAACGCCGATTTGGTTTGAGTGTGATCGGCGTGAGCA
ATCCGGGAGAGTGTCTGCGAAGGAATCTGGAAAGCGCCGGATGGCGTGTTGGCACTACTTTAACAGTTTTGTCCGATGGTGACCCTGCACTACGACGACT
GGTGCGCGACGCCACCGGTGCGGAGGTCAATCACATCCTTGACTGGTGGCATATTTCAATGCGCATCCGCCATGTGGAAACGACATTTCAAACCCTGTTT
TCTCTGCTCGGAGGTGCTGACGGTCTGACGGTAGAGAAGCTGGTACAAAACTTGCGTTGGCGCATTTGGCATGGCCAAACGGCTCGTGCGCTGGAAGCGA
TTGAAACGCTTTTCGGATTTGGCATGCGCGTCCGAGGCCAGACGGTTGGCAGAACGAATGACGCAGCGCTTTCGGCAGTTGCGCGCACAATGGAACTGAG
AACCTACTTGGAATACAATCGCGCGGCGCTTGTCGATTATGATCAAAGACGCCGTTGCGGGAAAGCGGTTTCGACATCGCGGGCTGAAGGATTGGTCAAC
GACATCGCCAACGCTCGCATGGGCAAAAAGCGCCGGATGCGCTGGTCCCCAAGTGGCGCACATCGAGTGGCAACGGTTAGGGCCGCAGTCCTAGATGGAA
GGCTTCGACAGGGCCAGCTCAGAGCGGCTTAATCCCCACATTCTTTCCACTCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1359 bp | 452 aa | 74 | 1432 | + | No |
Description :
ORF sequence :
MKFRIKLETEFGWGETRSHEICTLERRTLDASSEDLGLCLAEAKSLLKEVQCTLLQDQVEEISEIERVCRFCGTYLLVHDRRRRRIDTLFGRVTVEVPRV
RMCMCGLPGFPTLKVARSPLTRLLPDHAAPELRRLQAELGARHSFREAAKLLNELTPCARQNHVTIRNRLATTADNLTSNERSATEKADHRSKPSDLSVF
LDSAYVRSRPEYQRRNFEIVVGSIESKGGEKRRFGLSVIGVSNPGECLRRNLESAGWRVGTTLTVLSDGDPALRRLVRDATGAEVNHILDWWHISMRIRH
VETTFQTLFSLLGGADGLTVEKLVQNLRWRIWHGQTARALEAIETLFGFGMRVRGQTVGRTNDAALSAVARTMELRTYLEYNRAALVDYDQRRRCGKAVS
TSRAEGLVNDIANARMGKKRRMRWSPSGAHRVATVRAAVLDGRLRQGQLRAA
RMCMCGLPGFPTLKVARSPLTRLLPDHAAPELRRLQAELGARHSFREAAKLLNELTPCARQNHVTIRNRLATTADNLTSNERSATEKADHRSKPSDLSVF
LDSAYVRSRPEYQRRNFEIVVGSIESKGGEKRRFGLSVIGVSNPGECLRRNLESAGWRVGTTLTVLSDGDPALRRLVRDATGAEVNHILDWWHISMRIRH
VETTFQTLFSLLGGADGLTVEKLVQNLRWRIWHGQTARALEAIETLFGFGMRVRGQTVGRTNDAALSAVARTMELRTYLEYNRAALVDYDQRRRCGKAVS
TSRAEGLVNDIANARMGKKRRMRWSPSGAHRVATVRAAVLDGRLRQGQLRAA
Blast result :
Comments
There is 1 copy of this IS.
References
1] Brinkhoff,T., Wawrik,B., Simon,M., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct Submission.
2] ISfinder annotation (2008).
2] ISfinder annotation (2008).