ISRli1

  • Family ISKra4
  • Group ISAzba1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABIG01000013 ND Roseobacter litoralis
Roseobacter litoralis Och 149
DNA section
IS Length : 1454 bp

Ends


IR Length : 20/23

IRL : GGGAGTGGAAAGAGACTGGGGATACTTTTCGTTTTCCGTGTAGTCTTCTT
IRR : GGGAGTGGAAAGAATGTGGGGATTAAGCCGCTCTGAGCTGGCCCTGTCGA

Insertion site


Left flankDirect repeatRight flankDR Length
GATGGCACTGAAAGGGTGCT0

DNA sequence

GGGAGTGGAAAGAGACTGGGGATACTTTTCGTTTTCCGTGTAGTCTTCTTCTTTATTTGCAGGAGGCTTAGCGATGAAATTCAGGATCAAGTTGGAGACG
GAATTTGGTTGGGGCGAGACGCGATCACATGAGATTTGTACGCTGGAACGCCGAACGTTAGATGCGTCGAGCGAAGACCTTGGGCTGTGTCTGGCCGAGG
CAAAATCGCTGCTGAAGGAAGTTCAGTGTACGCTACTGCAGGATCAGGTCGAAGAGATCAGCGAAATCGAGCGCGTCTGTCGTTTCTGCGGAACATATCT
ACTGGTTCATGATCGCCGCCGACGTCGCATCGACACGCTCTTCGGTCGGGTGACCGTCGAGGTACCGCGGGTTCGGATGTGCATGTGTGGGCTGCCGGGA
TTTCCTACGCTGAAAGTCGCGCGGTCTCCTCTGACCCGTCTCTTGCCGGACCATGCCGCGCCAGAGCTTCGGCGATTGCAGGCGGAACTGGGTGCGCGCC
ATAGTTTTCGGGAAGCGGCAAAGCTTCTAAATGAATTGACGCCTTGCGCCAGGCAGAACCATGTTACGATCCGCAATCGGCTCGCGACCACAGCTGACAA
CCTTACGTCCAACGAACGCTCTGCGACAGAAAAAGCCGATCATCGCTCAAAGCCATCCGATCTCTCGGTATTTCTGGATAGCGCTTACGTTCGGTCAAGA
CCAGAATATCAGCGTCGGAACTTTGAGATTGTCGTTGGCTCCATCGAGAGCAAAGGTGGCGAGAAACGCCGATTTGGTTTGAGTGTGATCGGCGTGAGCA
ATCCGGGAGAGTGTCTGCGAAGGAATCTGGAAAGCGCCGGATGGCGTGTTGGCACTACTTTAACAGTTTTGTCCGATGGTGACCCTGCACTACGACGACT
GGTGCGCGACGCCACCGGTGCGGAGGTCAATCACATCCTTGACTGGTGGCATATTTCAATGCGCATCCGCCATGTGGAAACGACATTTCAAACCCTGTTT
TCTCTGCTCGGAGGTGCTGACGGTCTGACGGTAGAGAAGCTGGTACAAAACTTGCGTTGGCGCATTTGGCATGGCCAAACGGCTCGTGCGCTGGAAGCGA
TTGAAACGCTTTTCGGATTTGGCATGCGCGTCCGAGGCCAGACGGTTGGCAGAACGAATGACGCAGCGCTTTCGGCAGTTGCGCGCACAATGGAACTGAG
AACCTACTTGGAATACAATCGCGCGGCGCTTGTCGATTATGATCAAAGACGCCGTTGCGGGAAAGCGGTTTCGACATCGCGGGCTGAAGGATTGGTCAAC
GACATCGCCAACGCTCGCATGGGCAAAAAGCGCCGGATGCGCTGGTCCCCAAGTGGCGCACATCGAGTGGCAACGGTTAGGGCCGCAGTCCTAGATGGAA
GGCTTCGACAGGGCCAGCTCAGAGCGGCTTAATCCCCACATTCTTTCCACTCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1359 bp452 aa741432+No
ORF function : Transposase
Description :

ORF sequence :

MKFRIKLETEFGWGETRSHEICTLERRTLDASSEDLGLCLAEAKSLLKEVQCTLLQDQVEEISEIERVCRFCGTYLLVHDRRRRRIDTLFGRVTVEVPRV
RMCMCGLPGFPTLKVARSPLTRLLPDHAAPELRRLQAELGARHSFREAAKLLNELTPCARQNHVTIRNRLATTADNLTSNERSATEKADHRSKPSDLSVF
LDSAYVRSRPEYQRRNFEIVVGSIESKGGEKRRFGLSVIGVSNPGECLRRNLESAGWRVGTTLTVLSDGDPALRRLVRDATGAEVNHILDWWHISMRIRH
VETTFQTLFSLLGGADGLTVEKLVQNLRWRIWHGQTARALEAIETLFGFGMRVRGQTVGRTNDAALSAVARTMELRTYLEYNRAALVDYDQRRRCGKAVS
TSRAEGLVNDIANARMGKKRRMRWSPSGAHRVATVRAAVLDGRLRQGQLRAA

 

Blast result :
Comments
There is 1 copy of this IS.
References
1] Brinkhoff,T., Wawrik,B., Simon,M., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct Submission.

2] ISfinder annotation (2008).