ISRssp6
- Family ISKra4
- Group ISAzba1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAMV01000007 | ND | Roseovarius sp. | Roseovarius sp. 217 |
DNA section
IS Length : 1454 bp
Ends
IR Length : 23/27
IRL : GGGAGTGGAAAAGTTCTGGGGTTTCAGATCGAGGGCGACCTAGTCTCCTG
IRR : GGGAGTGGAAAGGATCTGGGGTTCAAGCGGCGTTGAGGTGTCGGGTTGAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAAAGGAAAC | GTGAATGAGA | 0 |
DNA sequence
GGGAGTGGAAAAGTTCTGGGGTTTCAGATCGAGGGCGACCTAGTCTCCTGCTGTCACGACAGGAGGGTTGACGATGAAAGTACGAATTAGGATCGAAACG
GAATTTGGCTGGGGCGAGCGTCGGGTTCATGATGTCGGTGTTCTGGAACGGCGTTCGACAGAGGCATGCGCGGAGGATTTCGGGCTAAGCCTTGCCGAAG
GGAAGGCAATCCTGAAAGAGATCCAAAGGGCAGTTCTGCAAGATCAAGTAGAGGAAATCAGTGAGATTGAGCGGGTTTGCCAGACCTGCCAAACCTACTT
GCCCATACATGATCGCCGGTCACGTCGGATAGACACTCTGTTCGGCCGTGTAACCGTCGAGGCACCACGGATCCGCATCTGCATGTGCCGTTTCCCGGGT
TTTCCAAACTGCACAGCAGCCTTCTCGCCACTCACGCGCATGCTCCCCGGAAATGCGACACCTGAACTTTGCAAGCTGCAGGCCGATTTGGCCGCGCGAC
ACAGTTTTCGTGAGGCCGCGCGGATTCTAAATGCGATGACACCATGCGCCAGACAAAACCACACGACAATTCGCAACCGTCTTGCCTCTGTCGCGGATGG
CTTGGAAACCCAGTGTGCCGAAATTCAAAAAGCCTTGGAAGTTCAACCTGATAGATCCGAGATGACAGTATTTCTGGATAGCGCCTATGTCCGCTCAAGA
CCCGAATATCAACGGCGGAACTTTGAAGTCATTGTCGGATCGATCGAGACCAAAACAGGCAACAAACGCCGTTTCGGATTGAGTCTTGCAGGGGCTGACC
ATCCCTTGGAGTGCCTGAAGTCCAATCTCAAAGCCGCAGGCTGGATCCCTGGTTCAGCCATAACAGTGTTGTCCGACGGTGATCCCGCCCTTCCGCGTCT
TGTGCGAAACGCAATCAATGGAAACGCCGAACACATCCTCGATTGGTGGCATATATCCGCCCGCATCAGGCACGTAGAGACAACGTTCCAAACCCTGCTG
TCGCAGCTTGAAAACAGCGAGACCTCCGATGTCGAGGCGCTTGTGGAACGGCTACGATGGCGCATCTGGCATGGCCAGGCTCACCGTGCGCTGGAAGCAC
TCGGAATCCTGTTCCGGTTTGCCATGCAGGCGCGCGATTGCGCTGCAGGTGACACAAAGGAAGCGGCAATGTCGGCAGCTGGTCGAACGATGGACCTCCA
GACCTACCTGACCCATAACCTGTCCGCTCTCGTCAACTACGGGCACCGGCGGAGGCAAGGAAAAGCTGTCTCGACATCGCGGGCCGAAGGCCTGGTCAAC
GAAATCGCCAATGTCCGAATGGGAAAGAAGCAGCGGATGCGGTGGTCACCAAGGGGCGCCCACATAGTCGCTACGGTTAGAGCGGCCGTTCTGGACGGAA
GACTGTCAACCCGACACCTCAACGCCGCTTGAACCCCAGATCCTTTCCACTCCC
GAATTTGGCTGGGGCGAGCGTCGGGTTCATGATGTCGGTGTTCTGGAACGGCGTTCGACAGAGGCATGCGCGGAGGATTTCGGGCTAAGCCTTGCCGAAG
GGAAGGCAATCCTGAAAGAGATCCAAAGGGCAGTTCTGCAAGATCAAGTAGAGGAAATCAGTGAGATTGAGCGGGTTTGCCAGACCTGCCAAACCTACTT
GCCCATACATGATCGCCGGTCACGTCGGATAGACACTCTGTTCGGCCGTGTAACCGTCGAGGCACCACGGATCCGCATCTGCATGTGCCGTTTCCCGGGT
TTTCCAAACTGCACAGCAGCCTTCTCGCCACTCACGCGCATGCTCCCCGGAAATGCGACACCTGAACTTTGCAAGCTGCAGGCCGATTTGGCCGCGCGAC
ACAGTTTTCGTGAGGCCGCGCGGATTCTAAATGCGATGACACCATGCGCCAGACAAAACCACACGACAATTCGCAACCGTCTTGCCTCTGTCGCGGATGG
CTTGGAAACCCAGTGTGCCGAAATTCAAAAAGCCTTGGAAGTTCAACCTGATAGATCCGAGATGACAGTATTTCTGGATAGCGCCTATGTCCGCTCAAGA
CCCGAATATCAACGGCGGAACTTTGAAGTCATTGTCGGATCGATCGAGACCAAAACAGGCAACAAACGCCGTTTCGGATTGAGTCTTGCAGGGGCTGACC
ATCCCTTGGAGTGCCTGAAGTCCAATCTCAAAGCCGCAGGCTGGATCCCTGGTTCAGCCATAACAGTGTTGTCCGACGGTGATCCCGCCCTTCCGCGTCT
TGTGCGAAACGCAATCAATGGAAACGCCGAACACATCCTCGATTGGTGGCATATATCCGCCCGCATCAGGCACGTAGAGACAACGTTCCAAACCCTGCTG
TCGCAGCTTGAAAACAGCGAGACCTCCGATGTCGAGGCGCTTGTGGAACGGCTACGATGGCGCATCTGGCATGGCCAGGCTCACCGTGCGCTGGAAGCAC
TCGGAATCCTGTTCCGGTTTGCCATGCAGGCGCGCGATTGCGCTGCAGGTGACACAAAGGAAGCGGCAATGTCGGCAGCTGGTCGAACGATGGACCTCCA
GACCTACCTGACCCATAACCTGTCCGCTCTCGTCAACTACGGGCACCGGCGGAGGCAAGGAAAAGCTGTCTCGACATCGCGGGCCGAAGGCCTGGTCAAC
GAAATCGCCAATGTCCGAATGGGAAAGAAGCAGCGGATGCGGTGGTCACCAAGGGGCGCCCACATAGTCGCTACGGTTAGAGCGGCCGTTCTGGACGGAA
GACTGTCAACCCGACACCTCAACGCCGCTTGAACCCCAGATCCTTTCCACTCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1359 bp | 452 aa | 74 | 1432 | + | No |
Chemistry : DDE
ORF sequence :
MKVRIRIETEFGWGERRVHDVGVLERRSTEACAEDFGLSLAEGKAILKEIQRAVLQDQVEEISEIERVCQTCQTYLPIHDRRSRRIDTLFGRVTVEAPRI
RICMCRFPGFPNCTAAFSPLTRMLPGNATPELCKLQADLAARHSFREAARILNAMTPCARQNHTTIRNRLASVADGLETQCAEIQKALEVQPDRSEMTVF
LDSAYVRSRPEYQRRNFEVIVGSIETKTGNKRRFGLSLAGADHPLECLKSNLKAAGWIPGSAITVLSDGDPALPRLVRNAINGNAEHILDWWHISARIRH
VETTFQTLLSQLENSETSDVEALVERLRWRIWHGQAHRALEALGILFRFAMQARDCAAGDTKEAAMSAAGRTMDLQTYLTHNLSALVNYGHRRRQGKAVS
TSRAEGLVNEIANVRMGKKQRMRWSPRGAHIVATVRAAVLDGRLSTRHLNAA
RICMCRFPGFPNCTAAFSPLTRMLPGNATPELCKLQADLAARHSFREAARILNAMTPCARQNHTTIRNRLASVADGLETQCAEIQKALEVQPDRSEMTVF
LDSAYVRSRPEYQRRNFEVIVGSIETKTGNKRRFGLSLAGADHPLECLKSNLKAAGWIPGSAITVLSDGDPALPRLVRNAINGNAEHILDWWHISARIRH
VETTFQTLLSQLENSETSDVEALVERLRWRIWHGQAHRALEALGILFRFAMQARDCAAGDTKEAAMSAAGRTMDLQTYLTHNLSALVNYGHRRRQGKAVS
TSRAEGLVNEIANVRMGKKQRMRWSPRGAHIVATVRAAVLDGRLSTRHLNAA
Blast result :
Comments
ISRssp6 is 50% aa similar to ISAzba1.
References