ISTxy1
- Family ISLre2
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_015555 | ND | Thermoanaerobacterium xylanolyticum | Thermoanaerobacterium thermosaccharolyticum M0795 Thermoanaerobacterium xylanolyticum LX-11 |
DNA section
IS Length : 1846 bp
Ends
IR Length : 17/23
IRL : CTTAGTGTAAAATTTTTTTAGGTGAAAAAGCAGGAAAATAGCGATGAAAT
IRR : GATCGTGTCAAGTATTTTTAGGTTTTTTTGAAAAAAAGACCTCACTATCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAAAGATAAA | TTAAACTTC | CTACTCTGTT | 9 |
TGAGAATTCG | AATTCTTA | AATTGTACTT | 8 |
TTATATTTTA | GACAAGAT | TAAAACTATT | 8 |
AAATTTGACG | ATAGAGTG | AAATATCCTG | 8 |
TATATTGAAT | GTATATA | CAGCATTATA | 7 |
TGTTTTTAAG | ATGAGTTAAA | 0 | |
AATTTAAAAA | GACAAAGAGA | 0 |
DNA sequence
CTTAGTGTAAAATTTTTTTAGGTGAAAAAGCAGGAAAATAGCGATGAAATGTAGAAATAAGACCTCACCATCCTCCCAAAAGGATGAGTTAGAAAATAAA
TAGGAAGGTGAGGTCTTATGAAAATAATTCAACATACACTTCAAAAATTCCTGCTTGTTGTAGAAAAAATTATTGGATTACTTGATGGAAAATATACCTA
TTTGGAATTTGAAGAAGAACTTAAAAAAATTCTAAATGAATTAGGAAAAGAGATTTGTGCAGATGTACTTCATGAACTTGATCAAAGCATATATAAAGAT
AAATACAAAAGGAAAAACTGGGTGGTAGTACAAAAAGATTGTGAAAGGACAATAACAACTGCATTTGGAGATATCACATACAAAAGACGATACTATAAAA
ACAAAGAAACAGGAGAGAAGGCATATCTCGTAGATAAAGCTGCTGGCATCCAAAAATATGAAAGAATAGATGCTGAGATTAAAGCTGATATAACGGATCT
TTCTACAATACTCTCATATCAAAAAACCACTCAGGAACTTAAAAGAAATGGAGCTAACTGCAATGTAAGCCGGCAAACAGTAATGAACACATTAAGAAAA
ATAGACAACCTTCAAACATATGAAAAGCCAAAGACTAAAAAAGAAATAGAAACTTTATACATAGAAGCTGATGAAGACCATATACATCTTCAAAACGGCA
AACCAGACATTGTAAAATTAATATACGTACACGAAGGAAAACAAACAATAACAAAAGGCAGAAATGAACTAAAAAATGCCGTATACTTTTCAGGTGTATA
CGAAGGAGAAAAAGTAGAAGAGTTATGGAAAGAAGTATGGGAGTACATTGTAAACACATATAACGAAGACAAAATAAAACGCATATACGTATCTGGAGAT
GGAGCAGAATGGATAAAATTCGGAGTAAAATATCTGCCTAATGCCGTATACGTATTAGACCTATTTCATCTACAAAAATACATAACAGCTGCAATAAAAG
AAGATAAAAAAACAAAGAGAGAATTATGGAAAGCCATATTTAAAGCAGACAAACAAAAAGTCAATGAGCTTTTAACACAAAAATACAAAGAACTAGAATT
AAACGGAACAGAAAATCCCGTAATGAAGTGCCAAACCTATATAAATAACAATTGGGATGGAATAAATTCATACAGCCTTTACAAAAAAGAAATAACAGGA
TGCAGTGCAGAAAGTCATGTAAGTCATGTACTTTCAGAGAGGCTATCAAGCAGACCAATTTCATGGAGCAAGGTTGGGGCTCACAAAATGGCAAAATTAA
GAGCAATAAAAGCAAGCGGTATATCACTGAAAGATGTCGTATTAAAACAGCAATATGAAAGCTTAAAGCCAATAGAAATACCAAAGCAAACAGTGTATAA
AGCGAAACAACAACTAAAGAAAATAAGATCAACTTATGAAAACATAATAAGCTTGCCAATATTGCAAAATAAAAAAACATTAACAAGTCAGGCTATAAAA
TCATTACTATTGAGAAATGCCATTTAAAAGTATGCATATATATTGAAGATTGTAGTTTTAGTTATTATTATGGGGAGCTTATTTGGGTTACCTATCACAT
GTAAAATTCATGAATAAATAGCATTGATATACATGATGGCTTCTTTGAAGAGCGTGAGAATCTGAGAATGAGTGAGATATTAAAAGAAAATCAAAGATTA
TAGAGTGAGTGGCGATTTTATGCTATCAAGAAGTTAAGAGACTTCAACACTAAAAAACTTTTCTTAAAATCCAGCTATCAATACTCATCCTTAGAGTGAT
AGTGAGGTCTTTTTTTCAAAAAAACCTAAAAATACTTGACACGATC
TAGGAAGGTGAGGTCTTATGAAAATAATTCAACATACACTTCAAAAATTCCTGCTTGTTGTAGAAAAAATTATTGGATTACTTGATGGAAAATATACCTA
TTTGGAATTTGAAGAAGAACTTAAAAAAATTCTAAATGAATTAGGAAAAGAGATTTGTGCAGATGTACTTCATGAACTTGATCAAAGCATATATAAAGAT
AAATACAAAAGGAAAAACTGGGTGGTAGTACAAAAAGATTGTGAAAGGACAATAACAACTGCATTTGGAGATATCACATACAAAAGACGATACTATAAAA
ACAAAGAAACAGGAGAGAAGGCATATCTCGTAGATAAAGCTGCTGGCATCCAAAAATATGAAAGAATAGATGCTGAGATTAAAGCTGATATAACGGATCT
TTCTACAATACTCTCATATCAAAAAACCACTCAGGAACTTAAAAGAAATGGAGCTAACTGCAATGTAAGCCGGCAAACAGTAATGAACACATTAAGAAAA
ATAGACAACCTTCAAACATATGAAAAGCCAAAGACTAAAAAAGAAATAGAAACTTTATACATAGAAGCTGATGAAGACCATATACATCTTCAAAACGGCA
AACCAGACATTGTAAAATTAATATACGTACACGAAGGAAAACAAACAATAACAAAAGGCAGAAATGAACTAAAAAATGCCGTATACTTTTCAGGTGTATA
CGAAGGAGAAAAAGTAGAAGAGTTATGGAAAGAAGTATGGGAGTACATTGTAAACACATATAACGAAGACAAAATAAAACGCATATACGTATCTGGAGAT
GGAGCAGAATGGATAAAATTCGGAGTAAAATATCTGCCTAATGCCGTATACGTATTAGACCTATTTCATCTACAAAAATACATAACAGCTGCAATAAAAG
AAGATAAAAAAACAAAGAGAGAATTATGGAAAGCCATATTTAAAGCAGACAAACAAAAAGTCAATGAGCTTTTAACACAAAAATACAAAGAACTAGAATT
AAACGGAACAGAAAATCCCGTAATGAAGTGCCAAACCTATATAAATAACAATTGGGATGGAATAAATTCATACAGCCTTTACAAAAAAGAAATAACAGGA
TGCAGTGCAGAAAGTCATGTAAGTCATGTACTTTCAGAGAGGCTATCAAGCAGACCAATTTCATGGAGCAAGGTTGGGGCTCACAAAATGGCAAAATTAA
GAGCAATAAAAGCAAGCGGTATATCACTGAAAGATGTCGTATTAAAACAGCAATATGAAAGCTTAAAGCCAATAGAAATACCAAAGCAAACAGTGTATAA
AGCGAAACAACAACTAAAGAAAATAAGATCAACTTATGAAAACATAATAAGCTTGCCAATATTGCAAAATAAAAAAACATTAACAAGTCAGGCTATAAAA
TCATTACTATTGAGAAATGCCATTTAAAAGTATGCATATATATTGAAGATTGTAGTTTTAGTTATTATTATGGGGAGCTTATTTGGGTTACCTATCACAT
GTAAAATTCATGAATAAATAGCATTGATATACATGATGGCTTCTTTGAAGAGCGTGAGAATCTGAGAATGAGTGAGATATTAAAAGAAAATCAAAGATTA
TAGAGTGAGTGGCGATTTTATGCTATCAAGAAGTTAAGAGACTTCAACACTAAAAAACTTTTCTTAAAATCCAGCTATCAATACTCATCCTTAGAGTGAT
AGTGAGGTCTTTTTTTCAAAAAAACCTAAAAATACTTGACACGATC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1410 bp | 469 aa | 118 | 1527 | + | No |
Chemistry : DDE
ORF sequence :
MKIIQHTLQKFLLVVEKIIGLLDGKYTYLEFEEELKKILNELGKEICADVLHELDQSIYKDKYKRKNWVVVQKDCERTITTAFGDITYKRRYYKNKETGE
KAYLVDKAAGIQKYERIDAEIKADITDLSTILSYQKTTQELKRNGANCNVSRQTVMNTLRKIDNLQTYEKPKTKKEIETLYIEADEDHIHLQNGKPDIVK
LIYVHEGKQTITKGRNELKNAVYFSGVYEGEKVEELWKEVWEYIVNTYNEDKIKRIYVSGDGAEWIKFGVKYLPNAVYVLDLFHLQKYITAAIKEDKKTK
RELWKAIFKADKQKVNELLTQKYKELELNGTENPVMKCQTYINNNWDGINSYSLYKKEITGCSAESHVSHVLSERLSSRPISWSKVGAHKMAKLRAIKAS
GISLKDVVLKQQYESLKPIEIPKQTVYKAKQQLKKIRSTYENIISLPILQNKKTLTSQAIKSLLLRNAI
KAYLVDKAAGIQKYERIDAEIKADITDLSTILSYQKTTQELKRNGANCNVSRQTVMNTLRKIDNLQTYEKPKTKKEIETLYIEADEDHIHLQNGKPDIVK
LIYVHEGKQTITKGRNELKNAVYFSGVYEGEKVEELWKEVWEYIVNTYNEDKIKRIYVSGDGAEWIKFGVKYLPNAVYVLDLFHLQKYITAAIKEDKKTK
RELWKAIFKADKQKVNELLTQKYKELELNGTENPVMKCQTYINNNWDGINSYSLYKKEITGCSAESHVSHVLSERLSSRPISWSKVGAHKMAKLRAIKAS
GISLKDVVLKQQYESLKPIEIPKQTVYKAKQQLKKIRSTYENIISLPILQNKKTLTSQAIKSLLLRNAI
Blast result :
Comments
ISTxy1 is 60% aa similar to ISAmde2.
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References