ISTxy1

  • Family ISLre2
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_015555 ND Thermoanaerobacterium xylanolyticum
Thermoanaerobacterium thermosaccharolyticum M0795
Thermoanaerobacterium xylanolyticum LX-11
DNA section
IS Length : 1846 bp

Ends


IR Length : 17/23

IRL : CTTAGTGTAAAATTTTTTTAGGTGAAAAAGCAGGAAAATAGCGATGAAAT
IRR : GATCGTGTCAAGTATTTTTAGGTTTTTTTGAAAAAAAGACCTCACTATCA

Insertion site


Left flankDirect repeatRight flankDR Length
AAAAGATAAATTAAACTTCCTACTCTGTT9
TGAGAATTCGAATTCTTAAATTGTACTT8
TTATATTTTAGACAAGATTAAAACTATT8
AAATTTGACGATAGAGTGAAATATCCTG8
TATATTGAATGTATATACAGCATTATA7
TGTTTTTAAGATGAGTTAAA0
AATTTAAAAAGACAAAGAGA0

DNA sequence

CTTAGTGTAAAATTTTTTTAGGTGAAAAAGCAGGAAAATAGCGATGAAATGTAGAAATAAGACCTCACCATCCTCCCAAAAGGATGAGTTAGAAAATAAA
TAGGAAGGTGAGGTCTTATGAAAATAATTCAACATACACTTCAAAAATTCCTGCTTGTTGTAGAAAAAATTATTGGATTACTTGATGGAAAATATACCTA
TTTGGAATTTGAAGAAGAACTTAAAAAAATTCTAAATGAATTAGGAAAAGAGATTTGTGCAGATGTACTTCATGAACTTGATCAAAGCATATATAAAGAT
AAATACAAAAGGAAAAACTGGGTGGTAGTACAAAAAGATTGTGAAAGGACAATAACAACTGCATTTGGAGATATCACATACAAAAGACGATACTATAAAA
ACAAAGAAACAGGAGAGAAGGCATATCTCGTAGATAAAGCTGCTGGCATCCAAAAATATGAAAGAATAGATGCTGAGATTAAAGCTGATATAACGGATCT
TTCTACAATACTCTCATATCAAAAAACCACTCAGGAACTTAAAAGAAATGGAGCTAACTGCAATGTAAGCCGGCAAACAGTAATGAACACATTAAGAAAA
ATAGACAACCTTCAAACATATGAAAAGCCAAAGACTAAAAAAGAAATAGAAACTTTATACATAGAAGCTGATGAAGACCATATACATCTTCAAAACGGCA
AACCAGACATTGTAAAATTAATATACGTACACGAAGGAAAACAAACAATAACAAAAGGCAGAAATGAACTAAAAAATGCCGTATACTTTTCAGGTGTATA
CGAAGGAGAAAAAGTAGAAGAGTTATGGAAAGAAGTATGGGAGTACATTGTAAACACATATAACGAAGACAAAATAAAACGCATATACGTATCTGGAGAT
GGAGCAGAATGGATAAAATTCGGAGTAAAATATCTGCCTAATGCCGTATACGTATTAGACCTATTTCATCTACAAAAATACATAACAGCTGCAATAAAAG
AAGATAAAAAAACAAAGAGAGAATTATGGAAAGCCATATTTAAAGCAGACAAACAAAAAGTCAATGAGCTTTTAACACAAAAATACAAAGAACTAGAATT
AAACGGAACAGAAAATCCCGTAATGAAGTGCCAAACCTATATAAATAACAATTGGGATGGAATAAATTCATACAGCCTTTACAAAAAAGAAATAACAGGA
TGCAGTGCAGAAAGTCATGTAAGTCATGTACTTTCAGAGAGGCTATCAAGCAGACCAATTTCATGGAGCAAGGTTGGGGCTCACAAAATGGCAAAATTAA
GAGCAATAAAAGCAAGCGGTATATCACTGAAAGATGTCGTATTAAAACAGCAATATGAAAGCTTAAAGCCAATAGAAATACCAAAGCAAACAGTGTATAA
AGCGAAACAACAACTAAAGAAAATAAGATCAACTTATGAAAACATAATAAGCTTGCCAATATTGCAAAATAAAAAAACATTAACAAGTCAGGCTATAAAA
TCATTACTATTGAGAAATGCCATTTAAAAGTATGCATATATATTGAAGATTGTAGTTTTAGTTATTATTATGGGGAGCTTATTTGGGTTACCTATCACAT
GTAAAATTCATGAATAAATAGCATTGATATACATGATGGCTTCTTTGAAGAGCGTGAGAATCTGAGAATGAGTGAGATATTAAAAGAAAATCAAAGATTA
TAGAGTGAGTGGCGATTTTATGCTATCAAGAAGTTAAGAGACTTCAACACTAAAAAACTTTTCTTAAAATCCAGCTATCAATACTCATCCTTAGAGTGAT
AGTGAGGTCTTTTTTTCAAAAAAACCTAAAAATACTTGACACGATC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1410 bp469 aa1181527+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKIIQHTLQKFLLVVEKIIGLLDGKYTYLEFEEELKKILNELGKEICADVLHELDQSIYKDKYKRKNWVVVQKDCERTITTAFGDITYKRRYYKNKETGE
KAYLVDKAAGIQKYERIDAEIKADITDLSTILSYQKTTQELKRNGANCNVSRQTVMNTLRKIDNLQTYEKPKTKKEIETLYIEADEDHIHLQNGKPDIVK
LIYVHEGKQTITKGRNELKNAVYFSGVYEGEKVEELWKEVWEYIVNTYNEDKIKRIYVSGDGAEWIKFGVKYLPNAVYVLDLFHLQKYITAAIKEDKKTK
RELWKAIFKADKQKVNELLTQKYKELELNGTENPVMKCQTYINNNWDGINSYSLYKKEITGCSAESHVSHVLSERLSSRPISWSKVGAHKMAKLRAIKAS
GISLKDVVLKQQYESLKPIEIPKQTVYKAKQQLKKIRSTYENIISLPILQNKKTLTSQAIKSLLLRNAI

 

Blast result :
Comments
ISTxy1 is 60% aa similar to ISAmde2.
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References