ISSyth4

  • Family ISLre2
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_006177 ND Symbiobacterium thermophilum
Symbiobacterium thermophilum IAM 14863
DNA section
IS Length : 1614 bp

Ends


IR Length : 16/24

IRL : GTGTGAGTAAAGTTTTCGTGGGTAGGCCACAACATTTCTGCTGAAAAAAG
IRR : GGGTCTGTCAAGTGAAAGTGGGTACGTCGCACTTCCAAAAGTGTTCTGTA

Insertion site


Left flankDirect repeatRight flankDR Length
CCCACGACAAACCGTCTTTC0

DNA sequence

GTGTGAGTAAAGTTTTCGTGGGTAGGCCACAACATTTCTGCTGAAAAAAGCAGGACGAGAGATGGCCCCTTCCAAAAGTGTTGTTGCTGGGAAAACACCA
ACACAGGGAGGGTCATCTCTCGTCATGGTTGAGATTCGTGCAGACAACGGCTTTTCCTTTGAGGAACTTGAAAGTGGTGTTTGGCAGCAGGTAGTGGAGT
GTTTCCGCGAAGTGCTGGTCGAGGCACTCTCGCGGGTGGACACTTTGCTGTATGAAAACCGGGACGCCCAGCGGTATGTGTTCAAAGAGATGCGGTCCCG
CACCCTCATGACCAAGTTTGGCCCGATCACATTCAAGCGCCGCTACTACTGGGACCAGGAGGAAAAGCGCTTTGTCTTTCTGCTGGATGAGGTGCTGCAG
ATCGCAAAGCGGCAGCGGGTGAGTGAATCGGTGAGGGCAGATGCGGTTGAAGCTGCAGTGACGGCCGGATCGTTTCGGGGTGCGGCAGCCGAGCTGGGGC
GGCGGGACTGTCAGGTTTACGTCAGCCACGAGGCGATCCGGCAGTGGAGCATCGAGACGGGAATGGCCCTTGCGGCAGCGCAGAAGCAGCGGCAGGTGAC
CGAAGGGGGGACCCGCAAAGTCCGCTTCCTGTACATCGAGGCGGATGGATTCTGGCCGGGTCGTCAGCGCGGCAAGAAGGCGGAAGTGCGGCTGTTCGTG
ATTCATGAGGGTTGGGTAGAGCGAACCCCGGCTGGTACGGAGTACAGGCTGGTAAACCGCCGCGATTTCATTCCCGACAGCGGACGGGACAGCTGGGAGC
AGTTGAGCGAGTTTCTGGAGAGGGAGTACGATCTCAGCGACACGTGGGTGATCATCAACGGGGACCGGGCCCGGTGGATTCGGGAGGGCGTGACGTGGTT
CCCGAAGGCGCTGTACCAGATCGACCGGTTTCACCTGAAGCAGGAGCTAAACCACGTGCTGCGCCACCAGCCCCGGCTCCTGGAACGAGCGAACGCTGCG
CTGGAGACAAACGACGCCGGAGGATTGCTGGCGGTACTGGAGGAAGCGCGTACTGCTGAGACCGACTCGAAGCGTCGTGGAGAGATCCGCAGGCTGGTGG
CCGACCTCAGGACGATGCCGGAGTCGATACGGGACTACCGCGTCCGACTTCAAGAGCGGGGCGTCAGCGTTGAAGGGTTACGCGGCCTGGGTGCAGCGGA
AGGGGCGGTGGAGCGGTACTCAGCACGGTTGCGGAAGGTCGGCCGGAGCTGGTCCGAGAGGGGCTTGAAGGCGATGATGCACGTGCTGGCCGCCTACTTT
CACGGCACTTTGCGTGGGGCCGTGGAGATGGTGGAACGCCAGCTGGGACTCGAATCACTGGCTGCAGTTCGGGAAAAGGTGCGGCACCGGGTCGTGGAGA
CCGTGGGGCGGGGCATTGAAGGAGTCCGCCACGGGCGCATGCCGATCTTGTATGCCGGTCGGAACGCCAGCGGCGGATACTCTCGGATGCTGAGGGCGGC
CGCCGGCTTCACCAAGTAGAAGAGGCAACAGAGGCATTCGGCGCCAATTCATGAACCAAAATCATACAGAACACTTTTGGAAGTGCGACGTACCCACTTT
CACTTGACAGACCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1458 bp485 aa621519+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAPSKSVVAGKTPTQGGSSLVMVEIRADNGFSFEELESGVWQQVVECFREVLVEALSRVDTLLYENRDAQRYVFKEMRSRTLMTKFGPITFKRRYYWDQE
EKRFVFLLDEVLQIAKRQRVSESVRADAVEAAVTAGSFRGAAAELGRRDCQVYVSHEAIRQWSIETGMALAAAQKQRQVTEGGTRKVRFLYIEADGFWPG
RQRGKKAEVRLFVIHEGWVERTPAGTEYRLVNRRDFIPDSGRDSWEQLSEFLEREYDLSDTWVIINGDRARWIREGVTWFPKALYQIDRFHLKQELNHVL
RHQPRLLERANAALETNDAGGLLAVLEEARTAETDSKRRGEIRRLVADLRTMPESIRDYRVRLQERGVSVEGLRGLGAAEGAVERYSARLRKVGRSWSER
GLKAMMHVLAAYFHGTLRGAVEMVERQLGLESLAAVREKVRHRVVETVGRGIEGVRHGRMPILYAGRNASGGYSRMLRAAAGFTK

 

Blast result :
Comments
ISSyth4 is 87% aa similar to ISSyth3.
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References