ISSyth4
- Family ISLre2
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006177 | ND | Symbiobacterium thermophilum | Symbiobacterium thermophilum IAM 14863 |
DNA section
IS Length : 1614 bp
Ends
IR Length : 16/24
IRL : GTGTGAGTAAAGTTTTCGTGGGTAGGCCACAACATTTCTGCTGAAAAAAG
IRR : GGGTCTGTCAAGTGAAAGTGGGTACGTCGCACTTCCAAAAGTGTTCTGTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCCACGACAA | ACCGTCTTTC | 0 |
DNA sequence
GTGTGAGTAAAGTTTTCGTGGGTAGGCCACAACATTTCTGCTGAAAAAAGCAGGACGAGAGATGGCCCCTTCCAAAAGTGTTGTTGCTGGGAAAACACCA
ACACAGGGAGGGTCATCTCTCGTCATGGTTGAGATTCGTGCAGACAACGGCTTTTCCTTTGAGGAACTTGAAAGTGGTGTTTGGCAGCAGGTAGTGGAGT
GTTTCCGCGAAGTGCTGGTCGAGGCACTCTCGCGGGTGGACACTTTGCTGTATGAAAACCGGGACGCCCAGCGGTATGTGTTCAAAGAGATGCGGTCCCG
CACCCTCATGACCAAGTTTGGCCCGATCACATTCAAGCGCCGCTACTACTGGGACCAGGAGGAAAAGCGCTTTGTCTTTCTGCTGGATGAGGTGCTGCAG
ATCGCAAAGCGGCAGCGGGTGAGTGAATCGGTGAGGGCAGATGCGGTTGAAGCTGCAGTGACGGCCGGATCGTTTCGGGGTGCGGCAGCCGAGCTGGGGC
GGCGGGACTGTCAGGTTTACGTCAGCCACGAGGCGATCCGGCAGTGGAGCATCGAGACGGGAATGGCCCTTGCGGCAGCGCAGAAGCAGCGGCAGGTGAC
CGAAGGGGGGACCCGCAAAGTCCGCTTCCTGTACATCGAGGCGGATGGATTCTGGCCGGGTCGTCAGCGCGGCAAGAAGGCGGAAGTGCGGCTGTTCGTG
ATTCATGAGGGTTGGGTAGAGCGAACCCCGGCTGGTACGGAGTACAGGCTGGTAAACCGCCGCGATTTCATTCCCGACAGCGGACGGGACAGCTGGGAGC
AGTTGAGCGAGTTTCTGGAGAGGGAGTACGATCTCAGCGACACGTGGGTGATCATCAACGGGGACCGGGCCCGGTGGATTCGGGAGGGCGTGACGTGGTT
CCCGAAGGCGCTGTACCAGATCGACCGGTTTCACCTGAAGCAGGAGCTAAACCACGTGCTGCGCCACCAGCCCCGGCTCCTGGAACGAGCGAACGCTGCG
CTGGAGACAAACGACGCCGGAGGATTGCTGGCGGTACTGGAGGAAGCGCGTACTGCTGAGACCGACTCGAAGCGTCGTGGAGAGATCCGCAGGCTGGTGG
CCGACCTCAGGACGATGCCGGAGTCGATACGGGACTACCGCGTCCGACTTCAAGAGCGGGGCGTCAGCGTTGAAGGGTTACGCGGCCTGGGTGCAGCGGA
AGGGGCGGTGGAGCGGTACTCAGCACGGTTGCGGAAGGTCGGCCGGAGCTGGTCCGAGAGGGGCTTGAAGGCGATGATGCACGTGCTGGCCGCCTACTTT
CACGGCACTTTGCGTGGGGCCGTGGAGATGGTGGAACGCCAGCTGGGACTCGAATCACTGGCTGCAGTTCGGGAAAAGGTGCGGCACCGGGTCGTGGAGA
CCGTGGGGCGGGGCATTGAAGGAGTCCGCCACGGGCGCATGCCGATCTTGTATGCCGGTCGGAACGCCAGCGGCGGATACTCTCGGATGCTGAGGGCGGC
CGCCGGCTTCACCAAGTAGAAGAGGCAACAGAGGCATTCGGCGCCAATTCATGAACCAAAATCATACAGAACACTTTTGGAAGTGCGACGTACCCACTTT
CACTTGACAGACCC
ACACAGGGAGGGTCATCTCTCGTCATGGTTGAGATTCGTGCAGACAACGGCTTTTCCTTTGAGGAACTTGAAAGTGGTGTTTGGCAGCAGGTAGTGGAGT
GTTTCCGCGAAGTGCTGGTCGAGGCACTCTCGCGGGTGGACACTTTGCTGTATGAAAACCGGGACGCCCAGCGGTATGTGTTCAAAGAGATGCGGTCCCG
CACCCTCATGACCAAGTTTGGCCCGATCACATTCAAGCGCCGCTACTACTGGGACCAGGAGGAAAAGCGCTTTGTCTTTCTGCTGGATGAGGTGCTGCAG
ATCGCAAAGCGGCAGCGGGTGAGTGAATCGGTGAGGGCAGATGCGGTTGAAGCTGCAGTGACGGCCGGATCGTTTCGGGGTGCGGCAGCCGAGCTGGGGC
GGCGGGACTGTCAGGTTTACGTCAGCCACGAGGCGATCCGGCAGTGGAGCATCGAGACGGGAATGGCCCTTGCGGCAGCGCAGAAGCAGCGGCAGGTGAC
CGAAGGGGGGACCCGCAAAGTCCGCTTCCTGTACATCGAGGCGGATGGATTCTGGCCGGGTCGTCAGCGCGGCAAGAAGGCGGAAGTGCGGCTGTTCGTG
ATTCATGAGGGTTGGGTAGAGCGAACCCCGGCTGGTACGGAGTACAGGCTGGTAAACCGCCGCGATTTCATTCCCGACAGCGGACGGGACAGCTGGGAGC
AGTTGAGCGAGTTTCTGGAGAGGGAGTACGATCTCAGCGACACGTGGGTGATCATCAACGGGGACCGGGCCCGGTGGATTCGGGAGGGCGTGACGTGGTT
CCCGAAGGCGCTGTACCAGATCGACCGGTTTCACCTGAAGCAGGAGCTAAACCACGTGCTGCGCCACCAGCCCCGGCTCCTGGAACGAGCGAACGCTGCG
CTGGAGACAAACGACGCCGGAGGATTGCTGGCGGTACTGGAGGAAGCGCGTACTGCTGAGACCGACTCGAAGCGTCGTGGAGAGATCCGCAGGCTGGTGG
CCGACCTCAGGACGATGCCGGAGTCGATACGGGACTACCGCGTCCGACTTCAAGAGCGGGGCGTCAGCGTTGAAGGGTTACGCGGCCTGGGTGCAGCGGA
AGGGGCGGTGGAGCGGTACTCAGCACGGTTGCGGAAGGTCGGCCGGAGCTGGTCCGAGAGGGGCTTGAAGGCGATGATGCACGTGCTGGCCGCCTACTTT
CACGGCACTTTGCGTGGGGCCGTGGAGATGGTGGAACGCCAGCTGGGACTCGAATCACTGGCTGCAGTTCGGGAAAAGGTGCGGCACCGGGTCGTGGAGA
CCGTGGGGCGGGGCATTGAAGGAGTCCGCCACGGGCGCATGCCGATCTTGTATGCCGGTCGGAACGCCAGCGGCGGATACTCTCGGATGCTGAGGGCGGC
CGCCGGCTTCACCAAGTAGAAGAGGCAACAGAGGCATTCGGCGCCAATTCATGAACCAAAATCATACAGAACACTTTTGGAAGTGCGACGTACCCACTTT
CACTTGACAGACCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1458 bp | 485 aa | 62 | 1519 | + | No |
Chemistry : DDE
ORF sequence :
MAPSKSVVAGKTPTQGGSSLVMVEIRADNGFSFEELESGVWQQVVECFREVLVEALSRVDTLLYENRDAQRYVFKEMRSRTLMTKFGPITFKRRYYWDQE
EKRFVFLLDEVLQIAKRQRVSESVRADAVEAAVTAGSFRGAAAELGRRDCQVYVSHEAIRQWSIETGMALAAAQKQRQVTEGGTRKVRFLYIEADGFWPG
RQRGKKAEVRLFVIHEGWVERTPAGTEYRLVNRRDFIPDSGRDSWEQLSEFLEREYDLSDTWVIINGDRARWIREGVTWFPKALYQIDRFHLKQELNHVL
RHQPRLLERANAALETNDAGGLLAVLEEARTAETDSKRRGEIRRLVADLRTMPESIRDYRVRLQERGVSVEGLRGLGAAEGAVERYSARLRKVGRSWSER
GLKAMMHVLAAYFHGTLRGAVEMVERQLGLESLAAVREKVRHRVVETVGRGIEGVRHGRMPILYAGRNASGGYSRMLRAAAGFTK
EKRFVFLLDEVLQIAKRQRVSESVRADAVEAAVTAGSFRGAAAELGRRDCQVYVSHEAIRQWSIETGMALAAAQKQRQVTEGGTRKVRFLYIEADGFWPG
RQRGKKAEVRLFVIHEGWVERTPAGTEYRLVNRRDFIPDSGRDSWEQLSEFLEREYDLSDTWVIINGDRARWIREGVTWFPKALYQIDRFHLKQELNHVL
RHQPRLLERANAALETNDAGGLLAVLEEARTAETDSKRRGEIRRLVADLRTMPESIRDYRVRLQERGVSVEGLRGLGAAEGAVERYSARLRKVGRSWSER
GLKAMMHVLAAYFHGTLRGAVEMVERQLGLESLAAVREKVRHRVVETVGRGIEGVRHGRMPILYAGRNASGGYSRMLRAAAGFTK
Blast result :
Comments
ISSyth4 is 87% aa similar to ISSyth3.
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References