ISHaha7
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
HE717023 | ND | Halobacillus halophilus | Halobacillus halophilus DSM 2266 |
DNA section
IS Length : 1367 bp
Ends
Left end : ATCATTCATCGGCAGAAGACTCCCTCTTCAAGCGCCGTGTCGAAGACCGGTGACAAGGGGGAGATGAATGCCGTCTCCGAAAGGCGAATGTCTTTGAATA II struct. : Yes
Right end : GACGGGGCTAGCCTAATCATTTGAATGAACCGTTAGGTTCGTGCTCTTAGGAATCCCCCAACTTCAAGGAGTGTCAGCGAGTAAGTGGGGGGTAGTTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CCTCCCCTTA | TTTT | AAACGCTTCA | TCAA |
ACTTGAATTT | TTTT | AAACTGAAAC | TCAA |
ATACCGGTTG | TTTT | AAACTCTAAA | TCAA |
CATATCTCGT | TTTT | GACCTCTATC | TCAA |
CCGCCGCTTG | TTTT | TCAGGCATCA | TCAA |
ATGGGATTTG | TTTT | TCGTTCATTA | TCAA |
TTGATCTTTT | TTTT | TTATACCTTA | TCAA |
GCACGAATCC | TTTT | GCTGGAGTTG | TCAA |
GTCTCCTAAT | TTTT | TAATTAAGGA | TCAA |
DNA sequence
ATCATTCATCGGCAGAAGACTCCCTCTTCAAGCGCCGTGTCGAAGACCGGTGACAAGGGGGAGATGAATGCCGTCTCCGAAAGGCGAATGTCTTTGAATA
TTCTCCCTTCCGTGATATCCTAAAGCAAGAACGTATGTTCCTGATTGGGAGGTGGAAAGGTTGAAGCATAAAGCGTATAACTTTCGTATCTATCCAAATA
AAACCCAAGAATCGCTCATCGCTAAGACAATCGGATGCGCTCGTTTTGTCTTCAATCATTTCCTCTCGGAATGGAGCAGTGCCTACAGGGAAACCGGAAA
AGGTTTGAGTTACTCTACTTGTTCCAAACAACTACCCAAGCTTAAAAGAGAATTCCTTTGGTTAAAGGAAGTGGATAGCACGGCCATCCAAACTTCGGTC
AAACATCTTTCTGACGCTTATAAACGGTTTTTCAAAAAGCAAAACCAAGCTCCACGGTACAAATCAAAGAAGAACAGAGTCCAGTCCTACACCACAAAAT
GCACAAACGGAAATATTGCCATCCAGGATCACAAAATCAAGCTGCCTAAGCTGGGGCTTGTGAGATTTGCCAAGAGCCGTGAAGTGAAAGGTCGCATCTT
GAGTGCGACGGTTCGCCGCAATCCGACCGGAAAATATTCTGTATCCATTCTTGTTAAAACAGATATTCAGGAACTTCCTAAATCCAACACTTATGTTGGC
ATTGATCTCGGATTGAAAGACTTCGCTGCTCTCTCGAATGGCACCACCTATCAAAACCCACGATACCTACGTAAGACCGAAAAGAAACTAGCAAAAGCTC
AACGTATCCTTTCCCGAAGGGAAAAGGGATCTTCGAATTGGCATAAGCAACGCATTAAAGTAGCTAGACTTCACGAGAAGATAGCGAACTCCCGCAAAGA
TTATCTGCATAAGATTTCTACCGAAATCATCAAAAACCACGATGTGATCGGTGTAGAAAATCTCCAAATTTCCAGTATGCTCAAAAACCGAAAACGATCC
AAATCGATTAGTGATGTGAGCTGGTCGATGTTCACGTCTATGCTCGAATACAAAGCAAAGTGGTACGGGAAGCAGTTGGTAACCGTATCGAAAGTTTTTG
CGAGTTCACAGCTGTGTTCCAAGTGCGGATACCAAAACAGTGAGGTAAAGAATCTCGCTGTTCGAACGTGGGATTGCCCAGATTGCGGCTGCCACCACGA
CCGCGACCTAAATGCGAGCTTCAATATATTGAAGGAGATTCAAAGAATCCTTTACAACCGTCGGTGCGACGGGGCTAGCCTAATCATTTGAATGAACCGT
TAGGTTCGTGCTCTTAGGAATCCCCCAACTTCAAGGAGTGTCAGCGAGTAAGTGGGGGGTAGTTCAA
TTCTCCCTTCCGTGATATCCTAAAGCAAGAACGTATGTTCCTGATTGGGAGGTGGAAAGGTTGAAGCATAAAGCGTATAACTTTCGTATCTATCCAAATA
AAACCCAAGAATCGCTCATCGCTAAGACAATCGGATGCGCTCGTTTTGTCTTCAATCATTTCCTCTCGGAATGGAGCAGTGCCTACAGGGAAACCGGAAA
AGGTTTGAGTTACTCTACTTGTTCCAAACAACTACCCAAGCTTAAAAGAGAATTCCTTTGGTTAAAGGAAGTGGATAGCACGGCCATCCAAACTTCGGTC
AAACATCTTTCTGACGCTTATAAACGGTTTTTCAAAAAGCAAAACCAAGCTCCACGGTACAAATCAAAGAAGAACAGAGTCCAGTCCTACACCACAAAAT
GCACAAACGGAAATATTGCCATCCAGGATCACAAAATCAAGCTGCCTAAGCTGGGGCTTGTGAGATTTGCCAAGAGCCGTGAAGTGAAAGGTCGCATCTT
GAGTGCGACGGTTCGCCGCAATCCGACCGGAAAATATTCTGTATCCATTCTTGTTAAAACAGATATTCAGGAACTTCCTAAATCCAACACTTATGTTGGC
ATTGATCTCGGATTGAAAGACTTCGCTGCTCTCTCGAATGGCACCACCTATCAAAACCCACGATACCTACGTAAGACCGAAAAGAAACTAGCAAAAGCTC
AACGTATCCTTTCCCGAAGGGAAAAGGGATCTTCGAATTGGCATAAGCAACGCATTAAAGTAGCTAGACTTCACGAGAAGATAGCGAACTCCCGCAAAGA
TTATCTGCATAAGATTTCTACCGAAATCATCAAAAACCACGATGTGATCGGTGTAGAAAATCTCCAAATTTCCAGTATGCTCAAAAACCGAAAACGATCC
AAATCGATTAGTGATGTGAGCTGGTCGATGTTCACGTCTATGCTCGAATACAAAGCAAAGTGGTACGGGAAGCAGTTGGTAACCGTATCGAAAGTTTTTG
CGAGTTCACAGCTGTGTTCCAAGTGCGGATACCAAAACAGTGAGGTAAAGAATCTCGCTGTTCGAACGTGGGATTGCCCAGATTGCGGCTGCCACCACGA
CCGCGACCTAAATGCGAGCTTCAATATATTGAAGGAGATTCAAAGAATCCTTTACAACCGTCGGTGCGACGGGGCTAGCCTAATCATTTGAATGAACCGT
TAGGTTCGTGCTCTTAGGAATCCCCCAACTTCAAGGAGTGTCAGCGAGTAAGTGGGGGGTAGTTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1140 bp | 379 aa | 152 | 1291 | + | No |
AG : TnpB
ORF sequence :
MERLKHKAYNFRIYPNKTQESLIAKTIGCARFVFNHFLSEWSSAYRETGKGLSYSTCSKQLPKLKREFLWLKEVDSTAIQTSVKHLSDAYKRFFKKQNQA
PRYKSKKNRVQSYTTKCTNGNIAIQDHKIKLPKLGLVRFAKSREVKGRILSATVRRNPTGKYSVSILVKTDIQELPKSNTYVGIDLGLKDFAALSNGTTY
QNPRYLRKTEKKLAKAQRILSRREKGSSNWHKQRIKVARLHEKIANSRKDYLHKISTEIIKNHDVIGVENLQISSMLKNRKRSKSISDVSWSMFTSMLEY
KAKWYGKQLVTVSKVFASSQLCSKCGYQNSEVKNLAVRTWDCPDCGCHHDRDLNASFNILKEIQRILYNRRCDGASLII
PRYKSKKNRVQSYTTKCTNGNIAIQDHKIKLPKLGLVRFAKSREVKGRILSATVRRNPTGKYSVSILVKTDIQELPKSNTYVGIDLGLKDFAALSNGTTY
QNPRYLRKTEKKLAKAQRILSRREKGSSNWHKQRIKVARLHEKIANSRKDYLHKISTEIIKNHDVIGVENLQISSMLKNRKRSKSISDVSWSMFTSMLEY
KAKWYGKQLVTVSKVFASSQLCSKCGYQNSEVKNLAVRTWDCPDCGCHHDRDLNASFNILKEIQRILYNRRCDGASLII
Blast result :
Comments
ISHaha7 is 85% (TnpB) aa similar to ISBth17.
References