ISLke1
- Family ISLre2
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_015602 | ND | Lactobacillus kefiranofaciens | Lactobacillus kefiranofaciens ZW3 |
DNA section
IS Length : 1599 bp
Ends
IR Length : 19/24
IRL : CTAAGTGTATAATTTTTTGCGGTAAGTTGAATAATTAATTAAAAAAGCTC
IRR : GTAAGTGTCAATATTTTTGCGGTAGGCTATTAACCATTAGTCTGACCTTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAAACAAGAA | CTGAAGGCC | TCAGCTCTTG | 9 |
TTTTTGTTTG | CTTTTAGGA | ATATAAAATG | 9 |
DNA sequence
CTAAGTGTATAATTTTTTGCGGTAAGTTGAATAATTAATTAAAAAAGCTCAAGTCCTTTGAATTTAGACTTGAGCTCAAACAAAAAGACCAGTAGTCTGA
TGTTAAGAACAAAAAACACATTAGAAGCTGGTCTTTTATGGAATCTATTATAACTGATATCGTGAAAATTATTAAGTCTGAAAATAATGTTATTGCTCGT
GAAAAGGCATTAATGTGCTACTTCTTTGGTTTGATTAGAGAATTAATAAAATTAGCACTAGAAGAAGTTGATGCCGGCTTAGTTGAAGAAACTAAAAAGC
AAGGCTATCAGATTGAAAAGAAAAATAAGCGCTCAGTTGTGACTGCCTTTGGTGAAATCAGCTATTGGCGCAGAAGATATGCTTGTCCTGGCAAAAAGGC
TAAATATCCACTGGATAAGCTGATGGGCTATGACAAATATAAGCGTTACAGTGTTTTGGCAGTAAAGGATATTTTGCAGGTTAGCGCCGTGGCAACTTAC
CGCAATACTGCTTTAGCTGTTAATACTCTCTCCTGTTTCAAGATTAGTCACAGCCAAGTTGGCAAGCTGATTGTGCAAGCAGGCAAACAGATTAAAGTAC
AGCAGCAGTCTGAGGAAAGATACGATGGTATTACTCAAAAGAAAAAGGTGCCAGTGCTTTATCTTGAAGGCGATGGCGTTGTGATCAAGGGCACCAAGAA
GCGGCTAGAGTTTCATCGCTATCAGGTCTGCGAGGATATTATTAATTTAAGCAAAACGCGCAGGAAAAGAGTACAGGCCAAAGAGTTTGTTTCTTTAAGC
CGCTTGGATGCTTTACAAGAAATTAAAGCTTATTTAGCCAATCCCTATGACTTAAGCAATACTTTAATCATCAGTAATGCCGATGGCGGTGCTGGTTATG
CCAAGAAAGACTTTGATGAAATAGTTGGCTATTGCCGGCAGCACGAACCCTTCTTGGATGTCTTTCACTTGAATAAAAAGATCAAAGATCGTCTAAGCTT
CATGCCGGCCATGCAAGGCAAATTGATCAGTGCAGTTGAGTTCAAGTATGATCGCCACTTGACTGACGTGATTTTAGACACGATTGAAAGCAATCTGGTT
GATGAGCTGAATACGCCAGAAAATCATGAAAACCTAAAGCGGCTGCGCAGCTATCTTCATCGTTGCTGGGTGGATATTAAGCCGTTTAAGATGCGTCATT
TGTCCGTAATTAAGGCAATTGGCTGCTGTGAGAGCAATCACCGTAAATATACTTATCGCGTCAAAGGGCAAGGAAAATACTGGTCAGAAGATGGTGCCGA
AGGAATTCTGCGTGTGCTGACTTGCATTAAAAACAAAGAGCTGGAATACTGGCTTAGCAGTGAATTTGCAGGTGGGCAGCTGAACATTGATGATCAAAAA
GACCTGAAAGGAGTGGTTCGTGCCAGCCTAAGAAAGACGCATGAAGCTCATCTGGGCATTCATCACGGCGCCATTGAAAGCTTAACAGCAGGTCATAGCT
ATTTGGATGATTTCGGCAGAAAATTAAGTCAAATAAATATTTAAGAAATTAAGGTCAGACTAATGGTTAATAGCCTACCGCAAAAATATTGACACTTAC
TGTTAAGAACAAAAAACACATTAGAAGCTGGTCTTTTATGGAATCTATTATAACTGATATCGTGAAAATTATTAAGTCTGAAAATAATGTTATTGCTCGT
GAAAAGGCATTAATGTGCTACTTCTTTGGTTTGATTAGAGAATTAATAAAATTAGCACTAGAAGAAGTTGATGCCGGCTTAGTTGAAGAAACTAAAAAGC
AAGGCTATCAGATTGAAAAGAAAAATAAGCGCTCAGTTGTGACTGCCTTTGGTGAAATCAGCTATTGGCGCAGAAGATATGCTTGTCCTGGCAAAAAGGC
TAAATATCCACTGGATAAGCTGATGGGCTATGACAAATATAAGCGTTACAGTGTTTTGGCAGTAAAGGATATTTTGCAGGTTAGCGCCGTGGCAACTTAC
CGCAATACTGCTTTAGCTGTTAATACTCTCTCCTGTTTCAAGATTAGTCACAGCCAAGTTGGCAAGCTGATTGTGCAAGCAGGCAAACAGATTAAAGTAC
AGCAGCAGTCTGAGGAAAGATACGATGGTATTACTCAAAAGAAAAAGGTGCCAGTGCTTTATCTTGAAGGCGATGGCGTTGTGATCAAGGGCACCAAGAA
GCGGCTAGAGTTTCATCGCTATCAGGTCTGCGAGGATATTATTAATTTAAGCAAAACGCGCAGGAAAAGAGTACAGGCCAAAGAGTTTGTTTCTTTAAGC
CGCTTGGATGCTTTACAAGAAATTAAAGCTTATTTAGCCAATCCCTATGACTTAAGCAATACTTTAATCATCAGTAATGCCGATGGCGGTGCTGGTTATG
CCAAGAAAGACTTTGATGAAATAGTTGGCTATTGCCGGCAGCACGAACCCTTCTTGGATGTCTTTCACTTGAATAAAAAGATCAAAGATCGTCTAAGCTT
CATGCCGGCCATGCAAGGCAAATTGATCAGTGCAGTTGAGTTCAAGTATGATCGCCACTTGACTGACGTGATTTTAGACACGATTGAAAGCAATCTGGTT
GATGAGCTGAATACGCCAGAAAATCATGAAAACCTAAAGCGGCTGCGCAGCTATCTTCATCGTTGCTGGGTGGATATTAAGCCGTTTAAGATGCGTCATT
TGTCCGTAATTAAGGCAATTGGCTGCTGTGAGAGCAATCACCGTAAATATACTTATCGCGTCAAAGGGCAAGGAAAATACTGGTCAGAAGATGGTGCCGA
AGGAATTCTGCGTGTGCTGACTTGCATTAAAAACAAAGAGCTGGAATACTGGCTTAGCAGTGAATTTGCAGGTGGGCAGCTGAACATTGATGATCAAAAA
GACCTGAAAGGAGTGGTTCGTGCCAGCCTAAGAAAGACGCATGAAGCTCATCTGGGCATTCATCACGGCGCCATTGAAAGCTTAACAGCAGGTCATAGCT
ATTTGGATGATTTCGGCAGAAAATTAAGTCAAATAAATATTTAAGAAATTAAGGTCAGACTAATGGTTAATAGCCTACCGCAAAAATATTGACACTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1407 bp | 468 aa | 138 | 1544 | + | No |
Chemistry : DDE
ORF sequence :
MESIITDIVKIIKSENNVIAREKALMCYFFGLIRELIKLALEEVDAGLVEETKKQGYQIEKKNKRSVVTAFGEISYWRRRYACPGKKAKYPLDKLMGYDK
YKRYSVLAVKDILQVSAVATYRNTALAVNTLSCFKISHSQVGKLIVQAGKQIKVQQQSEERYDGITQKKKVPVLYLEGDGVVIKGTKKRLEFHRYQVCED
IINLSKTRRKRVQAKEFVSLSRLDALQEIKAYLANPYDLSNTLIISNADGGAGYAKKDFDEIVGYCRQHEPFLDVFHLNKKIKDRLSFMPAMQGKLISAV
EFKYDRHLTDVILDTIESNLVDELNTPENHENLKRLRSYLHRCWVDIKPFKMRHLSVIKAIGCCESNHRKYTYRVKGQGKYWSEDGAEGILRVLTCIKNK
ELEYWLSSEFAGGQLNIDDQKDLKGVVRASLRKTHEAHLGIHHGAIESLTAGHSYLDDFGRKLSQINI
YKRYSVLAVKDILQVSAVATYRNTALAVNTLSCFKISHSQVGKLIVQAGKQIKVQQQSEERYDGITQKKKVPVLYLEGDGVVIKGTKKRLEFHRYQVCED
IINLSKTRRKRVQAKEFVSLSRLDALQEIKAYLANPYDLSNTLIISNADGGAGYAKKDFDEIVGYCRQHEPFLDVFHLNKKIKDRLSFMPAMQGKLISAV
EFKYDRHLTDVILDTIESNLVDELNTPENHENLKRLRSYLHRCWVDIKPFKMRHLSVIKAIGCCESNHRKYTYRVKGQGKYWSEDGAEGILRVLTCIKNK
ELEYWLSSEFAGGQLNIDDQKDLKGVVRASLRKTHEAHLGIHHGAIESLTAGHSYLDDFGRKLSQINI
Blast result :
Comments
ISLke1 is 96% aa similar to ISLhe10.
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
ISs of ISLre2 family preferentially insert in intergenic region, 15 to 17 bp upstream the -35 box of sigmaA promoters. [2][3][4]
References